* using log directory 'd:/RCompile/CRANincoming/R-devel/jskm.Rcheck'
* using R Under development (unstable) (2024-07-07 r86880 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'jskm/DESCRIPTION' ... OK
* this is package 'jskm' version '0.5.5'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [13s] Note_to_CRAN_maintainers
Maintainer: 'Jinseob Kim <jinseob2kim@gmail.com>'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'jskm' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [16s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from Rd file 'svyjskm.Rd':
svyjskm
  Code: function(sfit, theme = NULL, xlabs = "Time-to-event", ylabs =
                 "Survival probability", xlims = NULL, ylims = c(0, 1),
                 ystratalabs = NULL, ystrataname = NULL, surv.scale =
                 c("default", "percent"), timeby = NULL, main = "",
                 pval = FALSE, pval.size = 5, pval.coord = c(NULL,
                 NULL), pval.testname = F, legend = TRUE,
                 legendposition = c(0.85, 0.8), ci = NULL, linecols =
                 "Set1", dashed = FALSE, cumhaz = F, design = NULL,
                 subs = NULL, table = F, label.nrisk = "Numbers at
                 risk", size.label.nrisk = 10, cut.landmark = NULL,
                 showpercent = F, linewidth = 0.75,
                 nejm.infigure.ratiow = 0.6, nejm.infigure.ratioh =
                 0.5, nejm.infigure.ylim = c(0, 1), ...)
  Docs: function(sfit, theme = NULL, xlabs = "Time-to-event", ylabs =
                 "Survival probability", xlims = NULL, ylims = c(0, 1),
                 ystratalabs = NULL, ystrataname = NULL, surv.scale =
                 c("default", "percent"), timeby = NULL, main = "",
                 pval = FALSE, pval.size = 5, pval.coord = c(NULL,
                 NULL), pval.testname = F, marks = TRUE, shape = 3,
                 legend = TRUE, legendposition = c(0.85, 0.8), ci =
                 NULL, linecols = "Set1", dashed = FALSE, cumhaz = F,
                 design = NULL, subs = NULL, table = F, label.nrisk =
                 "Numbers at risk", size.label.nrisk = 10, cut.landmark
                 = NULL, showpercent = F, linewidth = 0.75,
                 nejm.infigure.ratiow = 0.6, nejm.infigure.ratioh =
                 0.5, nejm.infigure.ylim = c(0, 1), ...)
  Argument names in docs not in code:
    marks shape
  Mismatches in argument names (first 3):
    Position: 16 Code: legend Docs: marks
    Position: 17 Code: legendposition Docs: shape
    Position: 18 Code: ci Docs: legend

* checking Rd \usage sections ... WARNING
Undocumented arguments in Rd file 'svyjskm.Rd'
  'marks' 'shape'

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [18s] OK
  Running 'testthat.R' [17s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [17s] OK
* checking PDF version of manual ... [20s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 WARNINGs