* using log directory ‘/srv/hornik/tmp/CRAN_pretest/jskm.Rcheck’
* using R Under development (unstable) (2025-03-17 r87990)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (1+b1)
    Debian flang-new version 19.1.7 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘jskm/DESCRIPTION’ ... OK
* this is package ‘jskm’ version ‘0.5.11’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/10s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘jskm’ can be installed ... [6s/6s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [9s/9s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from Rd file 'svyjskm.Rd':
svyjskm
  Code: function(sfit, theme = NULL, xlabs = "Time-to-event", ylabs =
                 "Survival probability", xlims = NULL, ylims = c(0, 1),
                 ystratalabs = NULL, ystrataname = NULL, surv.scale =
                 c("default", "percent"), timeby = NULL, main = "",
                 pval = FALSE, pval.size = 4, pval.coord = c(NULL,
                 NULL), pval.testname = F, hr = FALSE, hr.size = 2,
                 hr.coord = c(NULL, NULL), med = FALSE, legend = TRUE,
                 legendposition = c(0.85, 0.8), ci = NULL, linecols =
                 "Set1", dashed = FALSE, cumhaz = F, design = NULL,
                 subs = NULL, table = F, table.censor = F, label.nrisk
                 = "Numbers at risk", size.label.nrisk = 10,
                 cut.landmark = NULL, showpercent = F, linewidth =
                 0.75, nejm.infigure.ratiow = 0.6, nejm.infigure.ratioh
                 = 0.5, nejm.infigure.ylim = c(0, 1), surv.by = NULL,
                 ...)
  Docs: function(sfit, theme = NULL, xlabs = "Time-to-event", ylabs =
                 "Survival probability", xlims = NULL, ylims = c(0, 1),
                 ystratalabs = NULL, ystrataname = NULL, font.family =
                 "Times New Roman", surv.scale = c("default",
                 "percent"), timeby = NULL, main = "", pval = FALSE,
                 pval.size = 4, pval.coord = c(NULL, NULL),
                 pval.testname = F, hr = FALSE, hr.size = 2, hr.coord =
                 c(NULL, NULL), med = FALSE, legend = TRUE,
                 legendposition = c(0.85, 0.8), ci = NULL, linecols =
                 "Set1", dashed = FALSE, cumhaz = F, design = NULL,
                 subs = NULL, table = F, table.censor = F, label.nrisk
                 = "Numbers at risk", size.label.nrisk = 10,
                 cut.landmark = NULL, showpercent = F, linewidth =
                 0.75, nejm.infigure.ratiow = 0.6, nejm.infigure.ratioh
                 = 0.5, nejm.infigure.ylim = c(0, 1), surv.by = NULL,
                 ...)
  Argument names in docs not in code:
    font.family
  Mismatches in argument names (first 3):
    Position: 9 Code: surv.scale Docs: font.family
    Position: 10 Code: timeby Docs: surv.scale
    Position: 11 Code: main Docs: timeby

* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [2s/2s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [5s/5s] OK
  Running ‘testthat.R’ [4s/4s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [11s/11s] OK
* checking PDF version of manual ... [2s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING