downloading reverse dependencies ...
downloading transreg_1.0.2.tar.gz ... ok

installing dependencies ‘cornet’, ‘GPM’, ‘joinet’, ‘mcen’, ‘MRCE’,
  ‘MTPS’, ‘MultivariateRandomForest’, ‘palasso’, ‘remMap’, ‘RMTL’,
  ‘SiER’, ‘starnet’

Warning: package ‘remMap’ is not available for this version of R

A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages
begin installing package ‘palasso’
begin installing package ‘MRCE’
begin installing package ‘MultivariateRandomForest’
begin installing package ‘SiER’
begin installing package ‘mcen’
begin installing package ‘GPM’
begin installing package ‘RMTL’
begin installing package ‘MTPS’
* installing *source* package ‘SiER’ ...
** package ‘SiER’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SiER)
* installing *source* package ‘MRCE’ ...
** package ‘MRCE’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmNFgDc/R.INSTALLce64af714bf1/MRCE/src'
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c mrce-solveb.c -o mrce-solveb.o
gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o MRCE.so mrce-solveb.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmNFgDc/R.INSTALLce64af714bf1/MRCE/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-MRCE/00new/MRCE/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MRCE)
* installing *source* package ‘RMTL’ ...
** package ‘RMTL’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RMTL)
* installing *source* package ‘palasso’ ...
** package ‘palasso’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (palasso)
begin installing package ‘cornet’
* installing *source* package ‘MTPS’ ...
** package ‘MTPS’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MTPS)
* installing *source* package ‘cornet’ ...
** package ‘cornet’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cornet)
begin installing package ‘starnet’
begin installing package ‘joinet’
* installing *source* package ‘mcen’ ...
** package ‘mcen’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7KQcbx/R.INSTALLce6442d2e5e6d/mcen/src'
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c BinUpdate.c -o BinUpdate.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c CDU.c -o CDU.o
gcc-14  -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c mcen_init.c -o mcen_init.o
gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o mcen.so BinUpdate.o CDU.o mcen_init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7KQcbx/R.INSTALLce6442d2e5e6d/mcen/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mcen/00new/mcen/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mcen)
* installing *source* package ‘joinet’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (joinet)
* installing *source* package ‘MultivariateRandomForest’ ...
** package ‘MultivariateRandomForest’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpt0bVe0/R.INSTALLce63d51a254d9/MultivariateRandomForest/src'
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c rcpp.cpp -o rcpp.o
rcpp.cpp: In function ‘Rcpp::List splitt2(Rcpp::NumericMatrix, Rcpp::NumericMatrix, int, Rcpp::NumericVector, Rcpp::NumericMatrix, int, Rcpp::NumericVector)’:
rcpp.cpp:112:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  112 |         for (int i = 0; i<yhat_nrow; ++i)
      |         ^~~
rcpp.cpp:118:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  118 |           for (int i = 0; i<yhat_nrow; ++i)
      |           ^~~
rcpp.cpp:119:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  119 |             for (int j = 0; j<Inv_Cov_Y.ncol(); ++j)
      |             ^~~
rcpp.cpp:125:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  125 |               NumericMatrix mult2(nrow,nrow);
      |               ^~~~~~~~~~~~~
rcpp.cpp:130:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  130 |         for (int i = 0; i<r1; ++i)
      |         ^~~
rcpp.cpp:136:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  136 |           for (int i = 0; i<r1; ++i)
      |           ^~~
rcpp.cpp:137:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  137 |             for (int j = 0; j<c2; ++j)
      |             ^~~
rcpp.cpp:143:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  143 |               for (int kk = 0; kk<nrow; kk++) {
      |               ^~~
rcpp.cpp:179:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  179 |         for (int i = 0; i<yhat_nrow; ++i)
      |         ^~~
rcpp.cpp:185:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  185 |           for (int i = 0; i<yhat_nrow; ++i)
      |           ^~~
rcpp.cpp:186:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  186 |             for (int j = 0; j<Inv_Cov_Y.ncol(); ++j)
      |             ^~~
rcpp.cpp:192:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  192 |               NumericMatrix mult2(nrow,nrow);
      |               ^~~~~~~~~~~~~
rcpp.cpp:197:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  197 |         for (int i = 0; i<r1; ++i)
      |         ^~~
rcpp.cpp:203:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  203 |           for (int i = 0; i<r1; ++i)
      |           ^~~
rcpp.cpp:204:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  204 |             for (int j = 0; j<c2; ++j)
      |             ^~~
rcpp.cpp:210:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  210 |               for (int kk = 0; kk<nrow; kk++) {
      |               ^~~
rcpp.cpp: In function ‘double Node_cost(Rcpp::NumericMatrix, Rcpp::NumericMatrix, int)’:
rcpp.cpp:305:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  305 |     for(int i=0; i<yhat_nrow; ++i)
      |     ^~~
rcpp.cpp:311:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  311 |       for(int i=0; i<yhat_nrow; ++i)
      |       ^~~
rcpp.cpp:312:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |         for(int j=0; j<Inv_Cov_Y.ncol(); ++j)
      |         ^~~
rcpp.cpp:318:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  318 |           NumericMatrix mult2(nrow,nrow);
      |           ^~~~~~~~~~~~~
rcpp.cpp:323:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  323 |     for(int i=0; i<r1; ++i)
      |     ^~~
rcpp.cpp:329:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  329 |       for(int i=0; i<r1; ++i)
      |       ^~~
rcpp.cpp:330:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  330 |         for(int j=0; j<c2; ++j)
      |         ^~~
rcpp.cpp:336:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  336 |           for(int kk=0; kk<nrow; kk++){
      |           ^~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c registerDynamicSymbol.cpp -o registerDynamicSymbol.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o MultivariateRandomForest.so RcppExports.o rcpp.o registerDynamicSymbol.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpt0bVe0/R.INSTALLce63d51a254d9/MultivariateRandomForest/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-MultivariateRandomForest/00new/MultivariateRandomForest/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MultivariateRandomForest)
* installing *source* package ‘starnet’ ...
** package ‘starnet’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (starnet)
* installing *source* package ‘GPM’ ...
** package ‘GPM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’
using C++11
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpraGZSB/R.INSTALLce646192d41cd/GPM/src'
g++-14  -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c CorrMat.cpp -o CorrMat.o
g++-14  -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c MatrixAlgebra.cpp -o MatrixAlgebra.o
g++-14  -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o GPM.so CorrMat.o MatrixAlgebra.o RcppExports.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpraGZSB/R.INSTALLce646192d41cd/GPM/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-GPM/00new/GPM/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GPM)

checking joinet_1.0.0.tar.gz ...
checking transreg_1.0.2.tar.gz ...

Depends:
Package: joinet
  Depends: R (>= 3.0.0)
  Imports: glmnet, palasso, cornet

Timings:
         user system elapsed
joinet 34.634  4.336  41.116

Results:
Check status summary:
                  NOTE OK
  Source packages    1  0
  Reverse depends    0  1

Check results summary:
joinet ... NOTE
* checking CRAN incoming feasibility ... [5s/7s] NOTE
rdepends_transreg ... OK