* using log directory 'd:/RCompile/CRANincoming/R-devel/jlmerclusterperm.Rcheck' * using R Under development (unstable) (2023-07-11 r84679 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.2.0 GNU Fortran (GCC) 12.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'jlmerclusterperm/DESCRIPTION' ... OK * this is package 'jlmerclusterperm' version '1.0.2' * package encoding: UTF-8 * checking CRAN incoming feasibility ... Note_to_CRAN_maintainers Maintainer: 'June Choe ' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'jlmerclusterperm' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [234s] ERROR Running 'testthat.R' [234s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(jlmerclusterperm) > > test_check("jlmerclusterperm") i Starting Julia with 2 threads v Starting Julia with 2 threads [3.3s] i Activating package environment ┌ Warning: The active manifest file has dependencies that were resolved with a different julia version (1.9.2). Unexpected behavior may occur. └ @ nothing D:\RCompile\CRANincoming\R-devel\lib\jlmerclusterperm\julia\Manifest.toml:0 Installed Adapt ─────────────────── v3.6.2 Installed MatrixFactorizations ──── v2.0.0 Installed HypergeometricFunctions ─ v0.3.18 Installed DiffRules ─────────────── v1.15.1 Installed BandedMatrices ────────── v0.17.30 Installed MutableArithmetics ────── v1.3.0 Installed JSON3 ─────────────────── v1.13.1 Installed Arrow ─────────────────── v2.6.2 Installed Suppressor ────────────── v0.2.4 Installed Mocking ───────────────── v0.7.7 Installed FastGaussQuadrature ───── v0.5.1 Installed Preferences ───────────── v1.4.0 Installed Parsers ───────────────── v2.7.1 Installed SentinelArrays ────────── v1.4.0 Installed SpecialFunctions ──────── v2.3.0 Installed PrettyTables ──────────── v2.2.5 Installed IfElse ────────────────── v0.1.1 Installed DataAPI ───────────────── v1.15.0 Installed ConcurrentUtilities ───── v2.2.0 Installed ArrowTypes ────────────── v2.2.2 Installed RecipesBase ───────────── v1.3.4 Installed StaticArrays ──────────── v1.6.0 Installed BSplineKit ────────────── v0.16.2 Installed TimeZones ─────────────── v1.10.0 Installed EnumX ─────────────────── v1.0.4 Installed PrecompileTools ───────── v1.1.2 Installed TranscodingStreams ────── v0.9.13 Installed MixedModels ───────────── v4.15.0 Installed Random123 ─────────────── v1.6.1 Installed FillArrays ────────────── v1.4.0 Installed LazyArrays ────────────── v1.2.1 Installed StatsModels ───────────── v0.7.2 Installed DataFrames ────────────── v1.6.0 Installed BitIntegers ───────────── v0.3.0 Installed GLM ───────────────────── v1.8.3 Installed LogExpFunctions ───────── v0.3.24 Installed DataStructures ────────── v0.18.14 Installed Static ────────────────── v0.8.7 Installed Compat ────────────────── v4.7.0 Installed SortingAlgorithms ─────── v1.1.1 Installed ArrayLayouts ──────────── v1.0.11 Installed Distributions ─────────── v0.25.98 Installed MathOptInterface ──────── v1.18.0 Building TimeZones → `C:\Users\CRAN\.julia\scratchspaces\44cfe95a-1eb2-52ea-b672-e2afdf69b78f\cdaa0c2a4449724aded839550eca7d7240bb6938\build.log` Precompiling project... ✓ Suppressor ✓ IfElse ✓ EnumX ✓ ArrowTypes ✓ Adapt ✓ DataAPI ✓ ConcurrentUtilities ✓ BitIntegers ✓ Missings ✓ TranscodingStreams ✓ PooledArrays ✓ SentinelArrays ✓ Random123 ✓ Static ✓ FillArrays ✗ Compat ✓ Tables ✓ CodecZlib ✗ LogExpFunctions ✓ JSON ✓ TypedTables ✓ BenchmarkTools ✓ MutableArithmetics ✓ CodecZstd ✓ CodecLz4 ✗ DataStructures ✗ CodecBzip2 ✗ StaticArrays ✗ SpecialFunctions ✓ DiffRules ✓ JSON3 ✓ ArrayLayouts ✓ PrettyTables ✗ SortingAlgorithms ✗ FastGaussQuadrature ✗ ForwardDiff ✓ MatrixFactorizations ✗ HypergeometricFunctions ✗ Arrow ✗ StatsBase ✗ DataFrames ✗ LazyArrays ✗ Distributions ✗ StatsModels ✗ GLM ✓ BandedMatrices ✗ BSplineKit ✗ MathOptInterface ✗ NLopt ✗ MixedModels 29 dependencies successfully precompiled in 114 seconds. 58 already precompiled. 1 skipped during auto due to previous errors. 2 dependencies precompiled but different versions are currently loaded. Restart julia to access the new versions 21 dependencies errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the packages x Activating package environment [2m 36.9s] i Starting Julia with 2 threads v Starting Julia with 2 threads [3.6s] i Activating package environment ┌ Warning: The active manifest file has dependencies that were resolved with a different julia version (1.9.2). Unexpected behavior may occur. └ @ nothing D:\RCompile\CRANincoming\R-devel\lib\jlmerclusterperm\julia\Manifest.toml:0 x Activating package environment [3.4s] ┌ Warning: The active manifest file has dependencies that were resolved with a different julia version (1.9.2). Unexpected behavior may occur. └ @ nothing D:\RCompile\CRANincoming\R-devel\lib\jlmerclusterperm\julia\Manifest.toml:0 ┌ Warning: The active manifest file has dependencies that were resolved with a different julia version (1.9.2). Unexpected behavior may occur. └ @ nothing D:\RCompile\CRANincoming\R-devel\lib\jlmerclusterperm\julia\Manifest.toml:0 ┌ Warning: The active manifest file has dependencies that were resolved with a different julia version (1.9.2). Unexpected behavior may occur. └ @ nothing D:\RCompile\CRANincoming\R-devel\lib\jlmerclusterperm\julia\Manifest.toml:0 ┌ Warning: The active manifest file has dependencies that were resolved with a different julia version (1.9.2). Unexpected behavior may occur. └ @ nothing D:\RCompile\CRANincoming\R-devel\lib\jlmerclusterperm\julia\Manifest.toml:0 ┌ Warning: The active manifest file has dependencies that were resolved with a different julia version (1.9.2). Unexpected behavior may occur. └ @ nothing D:\RCompile\CRANincoming\R-devel\lib\jlmerclusterperm\julia\Manifest.toml:0 ┌ Warning: The active manifest file has dependencies that were resolved with a different julia version (1.9.2). Unexpected behavior may occur. └ @ nothing D:\RCompile\CRANincoming\R-devel\lib\jlmerclusterperm\julia\Manifest.toml:0 ┌ Warning: The active manifest file has dependencies that were resolved with a different julia version (1.9.2). Unexpected behavior may occur. └ @ nothing D:\RCompile\CRANincoming\R-devel\lib\jlmerclusterperm\julia\Manifest.toml:0 ┌ Warning: The active manifest file has dependencies that were resolved with a different julia version (1.9.2). Unexpected behavior may occur. └ @ nothing D:\RCompile\CRANincoming\R-devel\lib\jlmerclusterperm\julia\Manifest.toml:0 [ FAIL 12 | WARN 20 | SKIP 0 | PASS 5 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-aaa.R:11:3'): Setup with seed works (use 2 for testing) ──────── Error: Evaluation in Julia failed. Original Julia error message: LoadError: Unsatisfiable requirements detected for package MatrixFactorizations [a3b82374]: MatrixFactorizations [a3b82374] log: ├─possible versions are: 0.0.1-2.0.0 or uninstalled ├─restricted to versions 2.0.0 by an explicit requirement, leaving only versions 2.0.0 └─restricted by julia compatibility requirements to versions: 0.0.1-1.0.0 or uninstalled — no versions left Stacktrace: [1] propagate_constraints!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; log_events::Bool) @ Pkg.Resolve C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1072 [2] propagate_constraints! (repeats 2 times) @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1008 [inlined] [3] simplify_graph!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; clean_graph::Bool) @ Pkg.Resolve C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1533 [4] simplify_graph! (repeats 2 times) @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1532 [inlined] [5] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{Pkg.Types.PackageSpec}, julia_version::VersionNumber) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:352 [6] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, level::Pkg.Types.UpgradeLevel; skip_writing_project::Bool) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:1364 [7] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; level::Pkg.Types.UpgradeLevel, mode::Pkg.Types.PackageMode, update_registry::Bool, skip_writing_project::Bool, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:341 [8] #up#55 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:161 [inlined] [9] #resolve#141 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:347 [inlined] [10] resolve @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:346 [inlined] [11] #resolve#140 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:345 [inlined] [12] top-level scope @ string:1 [13] eval @ .\boot.jl:368 [inlined] [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base .\loading.jl:1428 [15] include_string (repeats 2 times) @ .\loading.jl:1438 [inlined] [16] mainevalcmd(str::String) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150 [17] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Base .\essentials.jl:729 [18] invokelatest(::Any, ::Any, ::Vararg{Any}) @ Base .\essentials.jl:726 [19] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67 [20] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55 [21] serve_repl(sock::Sockets.TCPSocket) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185 [22] (::Main.RConnector.var"#3#5")() @ Main.RConnector .\task.jl:484 in expression starting at string:1 Backtrace: ▆ 1. ├─testthat::expect_true(jlmerclusterperm_setup()) at test-aaa.R:11:2 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─jlmerclusterperm::jlmerclusterperm_setup() 5. └─jlmerclusterperm:::setup_with_progress(verbose = verbose) 6. └─jlmerclusterperm:::set_projenv(verbose = verbose) 7. └─JuliaConnectoR::juliaEval("Pkg.resolve(io = devnull)") 8. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr) 9. ├─base::tryCatch(...) 10. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 11. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 12. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 13. └─JuliaConnectoR:::doCallJulia(funName, jlargs) 14. └─JuliaConnectoR:::handleCallbacksAndOutput() ── Error ('test-aaa.R:22:5'): Don't restart if FALSE ─────────────────────────── Error: Evaluation in Julia failed. Original Julia error message: LoadError: Unsatisfiable requirements detected for package MatrixFactorizations [a3b82374]: MatrixFactorizations [a3b82374] log: ├─possible versions are: 0.0.1-2.0.0 or uninstalled ├─restricted to versions 2.0.0 by an explicit requirement, leaving only versions 2.0.0 └─restricted by julia compatibility requirements to versions: 0.0.1-1.0.0 or uninstalled — no versions left Stacktrace: [1] propagate_constraints!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; log_events::Bool) @ Pkg.Resolve C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1072 [2] propagate_constraints! (repeats 2 times) @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1008 [inlined] [3] simplify_graph!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; clean_graph::Bool) @ Pkg.Resolve C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1533 [4] simplify_graph! (repeats 2 times) @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1532 [inlined] [5] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{Pkg.Types.PackageSpec}, julia_version::VersionNumber) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:352 [6] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, level::Pkg.Types.UpgradeLevel; skip_writing_project::Bool) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:1364 [7] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; level::Pkg.Types.UpgradeLevel, mode::Pkg.Types.PackageMode, update_registry::Bool, skip_writing_project::Bool, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:341 [8] #up#55 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:161 [inlined] [9] #resolve#141 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:347 [inlined] [10] resolve @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:346 [inlined] [11] #resolve#140 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:345 [inlined] [12] top-level scope @ string:1 [13] eval @ .\boot.jl:368 [inlined] [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base .\loading.jl:1428 [15] include_string (repeats 2 times) @ .\loading.jl:1438 [inlined] [16] mainevalcmd(str::String) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150 [17] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Base .\essentials.jl:729 [18] invokelatest(::Any, ::Any, ::Vararg{Any}) @ Base .\essentials.jl:726 [19] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67 [20] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55 [21] serve_repl(sock::Sockets.TCPSocket) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185 [22] (::Main.RConnector.var"#3#5")() @ Main.RConnector .\task.jl:484 in expression starting at string:1 Backtrace: ▆ 1. ├─testthat::expect_message(...) at test-aaa.R:22:4 2. │ └─testthat:::expect_condition_matching(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. └─jlmerclusterperm::jlmerclusterperm_setup(restart = FALSE) 8. └─jlmerclusterperm:::setup_with_progress(verbose = verbose) 9. └─jlmerclusterperm:::set_projenv(verbose = verbose) 10. └─JuliaConnectoR::juliaEval("Pkg.resolve(io = devnull)") 11. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr) 12. ├─base::tryCatch(...) 13. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 14. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 15. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 16. └─JuliaConnectoR:::doCallJulia(funName, jlargs) 17. └─JuliaConnectoR:::handleCallbacksAndOutput() ── Failure ('test-aaa.R:27:3'): RNG initializes to seed=1 counter=0 ──────────── get_rng_seed() (`actual`) not equal to 1 (`expected`). `actual` is NULL `expected` is a double vector (1) ── Error ('test-aaa.R:28:3'): RNG initializes to seed=1 counter=0 ────────────── Error: Evaluation in Julia failed. Original Julia error message: LoadError: UndefVarError: rng not defined Stacktrace: [1] top-level scope @ string:1 [2] eval @ .\boot.jl:368 [inlined] [3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base .\loading.jl:1428 [4] include_string (repeats 2 times) @ .\loading.jl:1438 [inlined] [5] mainevalcmd(str::String) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150 [6] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Base .\essentials.jl:729 [7] invokelatest(::Any, ::Any, ::Vararg{Any}) @ Base .\essentials.jl:726 [8] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67 [9] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55 [10] serve_repl(sock::Sockets.TCPSocket) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185 [11] (::Main.RConnector.var"#3#5")() @ Main.RConnector .\task.jl:484 in expression starting at string:1 Backtrace: ▆ 1. ├─testthat::expect_equal(get_rng_state(), 0) at test-aaa.R:28:2 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─jlmerclusterperm::get_rng_state() 5. └─JuliaConnectoR::juliaEval("Int(rng.ctr1)") 6. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr) 7. ├─base::tryCatch(...) 8. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 9. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 10. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 11. └─JuliaConnectoR:::doCallJulia(funName, jlargs) 12. └─JuliaConnectoR:::handleCallbacksAndOutput() ── Error ('test-clusterpermute.R:3:1'): (code run outside of `test_that()`) ──── Error: Evaluation in Julia failed. Original Julia error message: LoadError: Unsatisfiable requirements detected for package MatrixFactorizations [a3b82374]: MatrixFactorizations [a3b82374] log: ├─possible versions are: 0.0.1-2.0.0 or uninstalled ├─restricted to versions 2.0.0 by an explicit requirement, leaving only versions 2.0.0 └─restricted by julia compatibility requirements to versions: 0.0.1-1.0.0 or uninstalled — no versions left Stacktrace: [1] propagate_constraints!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; log_events::Bool) @ Pkg.Resolve C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1072 [2] propagate_constraints! (repeats 2 times) @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1008 [inlined] [3] simplify_graph!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; clean_graph::Bool) @ Pkg.Resolve C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1533 [4] simplify_graph! (repeats 2 times) @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1532 [inlined] [5] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{Pkg.Types.PackageSpec}, julia_version::VersionNumber) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:352 [6] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, level::Pkg.Types.UpgradeLevel; skip_writing_project::Bool) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:1364 [7] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; level::Pkg.Types.UpgradeLevel, mode::Pkg.Types.PackageMode, update_registry::Bool, skip_writing_project::Bool, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:341 [8] #up#55 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:161 [inlined] [9] #resolve#141 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:347 [inlined] [10] resolve @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:346 [inlined] [11] #resolve#140 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:345 [inlined] [12] top-level scope @ string:1 [13] eval @ .\boot.jl:368 [inlined] [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base .\loading.jl:1428 [15] include_string (repeats 2 times) @ .\loading.jl:1438 [inlined] [16] mainevalcmd(str::String) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150 [17] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Base .\essentials.jl:729 [18] invokelatest(::Any, ::Any, ::Vararg{Any}) @ Base .\essentials.jl:726 [19] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67 [20] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55 [21] serve_repl(sock::Sockets.TCPSocket) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185 [22] (::Main.RConnector.var"#3#5")() @ Main.RConnector .\task.jl:484 in expression starting at string:1 Backtrace: ▆ 1. └─jlmerclusterperm::jlmerclusterperm_setup(restart = FALSE, verbose = FALSE) at test-clusterpermute.R:3:0 2. └─jlmerclusterperm:::setup_with_progress(verbose = verbose) 3. └─jlmerclusterperm:::set_projenv(verbose = verbose) 4. └─JuliaConnectoR::juliaEval("Pkg.resolve(io = devnull)") 5. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr) 6. ├─base::tryCatch(...) 7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 10. └─JuliaConnectoR:::doCallJulia(funName, jlargs) 11. └─JuliaConnectoR:::handleCallbacksAndOutput() ── Error ('test-jlmer.R:6:1'): (code run outside of `test_that()`) ───────────── Error: Evaluation in Julia failed. Original Julia error message: LoadError: Unsatisfiable requirements detected for package MatrixFactorizations [a3b82374]: MatrixFactorizations [a3b82374] log: ├─possible versions are: 0.0.1-2.0.0 or uninstalled ├─restricted to versions 2.0.0 by an explicit requirement, leaving only versions 2.0.0 └─restricted by julia compatibility requirements to versions: 0.0.1-1.0.0 or uninstalled — no versions left Stacktrace: [1] propagate_constraints!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; log_events::Bool) @ Pkg.Resolve C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1072 [2] propagate_constraints! (repeats 2 times) @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1008 [inlined] [3] simplify_graph!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; clean_graph::Bool) @ Pkg.Resolve C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1533 [4] simplify_graph! (repeats 2 times) @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1532 [inlined] [5] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{Pkg.Types.PackageSpec}, julia_version::VersionNumber) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:352 [6] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, level::Pkg.Types.UpgradeLevel; skip_writing_project::Bool) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:1364 [7] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; level::Pkg.Types.UpgradeLevel, mode::Pkg.Types.PackageMode, update_registry::Bool, skip_writing_project::Bool, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:341 [8] #up#55 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:161 [inlined] [9] #resolve#141 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:347 [inlined] [10] resolve @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:346 [inlined] [11] #resolve#140 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:345 [inlined] [12] top-level scope @ string:1 [13] eval @ .\boot.jl:368 [inlined] [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base .\loading.jl:1428 [15] include_string (repeats 2 times) @ .\loading.jl:1438 [inlined] [16] mainevalcmd(str::String) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150 [17] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Base .\essentials.jl:729 [18] invokelatest(::Any, ::Any, ::Vararg{Any}) @ Base .\essentials.jl:726 [19] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67 [20] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55 [21] serve_repl(sock::Sockets.TCPSocket) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185 [22] (::Main.RConnector.var"#3#5")() @ Main.RConnector .\task.jl:484 in expression starting at string:1 Backtrace: ▆ 1. └─jlmerclusterperm::jlmerclusterperm_setup(restart = FALSE, verbose = FALSE) at test-jlmer.R:6:0 2. └─jlmerclusterperm:::setup_with_progress(verbose = verbose) 3. └─jlmerclusterperm:::set_projenv(verbose = verbose) 4. └─JuliaConnectoR::juliaEval("Pkg.resolve(io = devnull)") 5. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr) 6. ├─base::tryCatch(...) 7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 10. └─JuliaConnectoR:::doCallJulia(funName, jlargs) 11. └─JuliaConnectoR:::handleCallbacksAndOutput() ── Error ('test-julia_rng.R:3:1'): (code run outside of `test_that()`) ───────── Error: Evaluation in Julia failed. Original Julia error message: LoadError: Unsatisfiable requirements detected for package MatrixFactorizations [a3b82374]: MatrixFactorizations [a3b82374] log: ├─possible versions are: 0.0.1-2.0.0 or uninstalled ├─restricted to versions 2.0.0 by an explicit requirement, leaving only versions 2.0.0 └─restricted by julia compatibility requirements to versions: 0.0.1-1.0.0 or uninstalled — no versions left Stacktrace: [1] propagate_constraints!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; log_events::Bool) @ Pkg.Resolve C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1072 [2] propagate_constraints! (repeats 2 times) @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1008 [inlined] [3] simplify_graph!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; clean_graph::Bool) @ Pkg.Resolve C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1533 [4] simplify_graph! (repeats 2 times) @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1532 [inlined] [5] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{Pkg.Types.PackageSpec}, julia_version::VersionNumber) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:352 [6] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, level::Pkg.Types.UpgradeLevel; skip_writing_project::Bool) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:1364 [7] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; level::Pkg.Types.UpgradeLevel, mode::Pkg.Types.PackageMode, update_registry::Bool, skip_writing_project::Bool, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:341 [8] #up#55 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:161 [inlined] [9] #resolve#141 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:347 [inlined] [10] resolve @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:346 [inlined] [11] #resolve#140 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:345 [inlined] [12] top-level scope @ string:1 [13] eval @ .\boot.jl:368 [inlined] [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base .\loading.jl:1428 [15] include_string (repeats 2 times) @ .\loading.jl:1438 [inlined] [16] mainevalcmd(str::String) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150 [17] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Base .\essentials.jl:729 [18] invokelatest(::Any, ::Any, ::Vararg{Any}) @ Base .\essentials.jl:726 [19] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67 [20] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55 [21] serve_repl(sock::Sockets.TCPSocket) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185 [22] (::Main.RConnector.var"#3#5")() @ Main.RConnector .\task.jl:484 in expression starting at string:1 Backtrace: ▆ 1. └─jlmerclusterperm::jlmerclusterperm_setup(restart = FALSE, verbose = FALSE) at test-julia_rng.R:3:0 2. └─jlmerclusterperm:::setup_with_progress(verbose = verbose) 3. └─jlmerclusterperm:::set_projenv(verbose = verbose) 4. └─JuliaConnectoR::juliaEval("Pkg.resolve(io = devnull)") 5. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr) 6. ├─base::tryCatch(...) 7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 10. └─JuliaConnectoR:::doCallJulia(funName, jlargs) 11. └─JuliaConnectoR:::handleCallbacksAndOutput() ── Error ('test-permute.R:3:1'): (code run outside of `test_that()`) ─────────── Error: Evaluation in Julia failed. Original Julia error message: LoadError: Unsatisfiable requirements detected for package MatrixFactorizations [a3b82374]: MatrixFactorizations [a3b82374] log: ├─possible versions are: 0.0.1-2.0.0 or uninstalled ├─restricted to versions 2.0.0 by an explicit requirement, leaving only versions 2.0.0 └─restricted by julia compatibility requirements to versions: 0.0.1-1.0.0 or uninstalled — no versions left Stacktrace: [1] propagate_constraints!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; log_events::Bool) @ Pkg.Resolve C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1072 [2] propagate_constraints! (repeats 2 times) @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1008 [inlined] [3] simplify_graph!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; clean_graph::Bool) @ Pkg.Resolve C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1533 [4] simplify_graph! (repeats 2 times) @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1532 [inlined] [5] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{Pkg.Types.PackageSpec}, julia_version::VersionNumber) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:352 [6] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, level::Pkg.Types.UpgradeLevel; skip_writing_project::Bool) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:1364 [7] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; level::Pkg.Types.UpgradeLevel, mode::Pkg.Types.PackageMode, update_registry::Bool, skip_writing_project::Bool, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:341 [8] #up#55 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:161 [inlined] [9] #resolve#141 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:347 [inlined] [10] resolve @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:346 [inlined] [11] #resolve#140 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:345 [inlined] [12] top-level scope @ string:1 [13] eval @ .\boot.jl:368 [inlined] [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base .\loading.jl:1428 [15] include_string (repeats 2 times) @ .\loading.jl:1438 [inlined] [16] mainevalcmd(str::String) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150 [17] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Base .\essentials.jl:729 [18] invokelatest(::Any, ::Any, ::Vararg{Any}) @ Base .\essentials.jl:726 [19] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67 [20] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55 [21] serve_repl(sock::Sockets.TCPSocket) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185 [22] (::Main.RConnector.var"#3#5")() @ Main.RConnector .\task.jl:484 in expression starting at string:1 Backtrace: ▆ 1. └─jlmerclusterperm::jlmerclusterperm_setup(restart = FALSE, verbose = FALSE) at test-permute.R:3:0 2. └─jlmerclusterperm:::setup_with_progress(verbose = verbose) 3. └─jlmerclusterperm:::set_projenv(verbose = verbose) 4. └─JuliaConnectoR::juliaEval("Pkg.resolve(io = devnull)") 5. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr) 6. ├─base::tryCatch(...) 7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 10. └─JuliaConnectoR:::doCallJulia(funName, jlargs) 11. └─JuliaConnectoR:::handleCallbacksAndOutput() ── Error ('test-progress.R:3:1'): (code run outside of `test_that()`) ────────── Error: Evaluation in Julia failed. Original Julia error message: LoadError: Unsatisfiable requirements detected for package MatrixFactorizations [a3b82374]: MatrixFactorizations [a3b82374] log: ├─possible versions are: 0.0.1-2.0.0 or uninstalled ├─restricted to versions 2.0.0 by an explicit requirement, leaving only versions 2.0.0 └─restricted by julia compatibility requirements to versions: 0.0.1-1.0.0 or uninstalled — no versions left Stacktrace: [1] propagate_constraints!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; log_events::Bool) @ Pkg.Resolve C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1072 [2] propagate_constraints! (repeats 2 times) @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1008 [inlined] [3] simplify_graph!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; clean_graph::Bool) @ Pkg.Resolve C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1533 [4] simplify_graph! (repeats 2 times) @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1532 [inlined] [5] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{Pkg.Types.PackageSpec}, julia_version::VersionNumber) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:352 [6] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, level::Pkg.Types.UpgradeLevel; skip_writing_project::Bool) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:1364 [7] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; level::Pkg.Types.UpgradeLevel, mode::Pkg.Types.PackageMode, update_registry::Bool, skip_writing_project::Bool, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:341 [8] #up#55 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:161 [inlined] [9] #resolve#141 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:347 [inlined] [10] resolve @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:346 [inlined] [11] #resolve#140 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:345 [inlined] [12] top-level scope @ string:1 [13] eval @ .\boot.jl:368 [inlined] [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base .\loading.jl:1428 [15] include_string (repeats 2 times) @ .\loading.jl:1438 [inlined] [16] mainevalcmd(str::String) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150 [17] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Base .\essentials.jl:729 [18] invokelatest(::Any, ::Any, ::Vararg{Any}) @ Base .\essentials.jl:726 [19] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67 [20] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55 [21] serve_repl(sock::Sockets.TCPSocket) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185 [22] (::Main.RConnector.var"#3#5")() @ Main.RConnector .\task.jl:484 in expression starting at string:1 Backtrace: ▆ 1. └─jlmerclusterperm::jlmerclusterperm_setup(restart = FALSE, verbose = FALSE) at test-progress.R:3:0 2. └─jlmerclusterperm:::setup_with_progress(verbose = verbose) 3. └─jlmerclusterperm:::set_projenv(verbose = verbose) 4. └─JuliaConnectoR::juliaEval("Pkg.resolve(io = devnull)") 5. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr) 6. ├─base::tryCatch(...) 7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 10. └─JuliaConnectoR:::doCallJulia(funName, jlargs) 11. └─JuliaConnectoR:::handleCallbacksAndOutput() ── Error ('test-singularity.R:3:1'): (code run outside of `test_that()`) ─────── Error: Evaluation in Julia failed. Original Julia error message: LoadError: Unsatisfiable requirements detected for package MatrixFactorizations [a3b82374]: MatrixFactorizations [a3b82374] log: ├─possible versions are: 0.0.1-2.0.0 or uninstalled ├─restricted to versions 2.0.0 by an explicit requirement, leaving only versions 2.0.0 └─restricted by julia compatibility requirements to versions: 0.0.1-1.0.0 or uninstalled — no versions left Stacktrace: [1] propagate_constraints!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; log_events::Bool) @ Pkg.Resolve C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1072 [2] propagate_constraints! (repeats 2 times) @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1008 [inlined] [3] simplify_graph!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; clean_graph::Bool) @ Pkg.Resolve C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1533 [4] simplify_graph! (repeats 2 times) @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1532 [inlined] [5] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{Pkg.Types.PackageSpec}, julia_version::VersionNumber) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:352 [6] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, level::Pkg.Types.UpgradeLevel; skip_writing_project::Bool) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:1364 [7] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; level::Pkg.Types.UpgradeLevel, mode::Pkg.Types.PackageMode, update_registry::Bool, skip_writing_project::Bool, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:341 [8] #up#55 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:161 [inlined] [9] #resolve#141 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:347 [inlined] [10] resolve @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:346 [inlined] [11] #resolve#140 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:345 [inlined] [12] top-level scope @ string:1 [13] eval @ .\boot.jl:368 [inlined] [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base .\loading.jl:1428 [15] include_string (repeats 2 times) @ .\loading.jl:1438 [inlined] [16] mainevalcmd(str::String) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150 [17] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Base .\essentials.jl:729 [18] invokelatest(::Any, ::Any, ::Vararg{Any}) @ Base .\essentials.jl:726 [19] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67 [20] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55 [21] serve_repl(sock::Sockets.TCPSocket) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185 [22] (::Main.RConnector.var"#3#5")() @ Main.RConnector .\task.jl:484 in expression starting at string:1 Backtrace: ▆ 1. └─jlmerclusterperm::jlmerclusterperm_setup(restart = FALSE, verbose = FALSE) at test-singularity.R:3:0 2. └─jlmerclusterperm:::setup_with_progress(verbose = verbose) 3. └─jlmerclusterperm:::set_projenv(verbose = verbose) 4. └─JuliaConnectoR::juliaEval("Pkg.resolve(io = devnull)") 5. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr) 6. ├─base::tryCatch(...) 7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 10. └─JuliaConnectoR:::doCallJulia(funName, jlargs) 11. └─JuliaConnectoR:::handleCallbacksAndOutput() ── Error ('test-threshold_search.R:3:1'): (code run outside of `test_that()`) ── Error: Evaluation in Julia failed. Original Julia error message: LoadError: Unsatisfiable requirements detected for package MatrixFactorizations [a3b82374]: MatrixFactorizations [a3b82374] log: ├─possible versions are: 0.0.1-2.0.0 or uninstalled ├─restricted to versions 2.0.0 by an explicit requirement, leaving only versions 2.0.0 └─restricted by julia compatibility requirements to versions: 0.0.1-1.0.0 or uninstalled — no versions left Stacktrace: [1] propagate_constraints!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; log_events::Bool) @ Pkg.Resolve C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1072 [2] propagate_constraints! (repeats 2 times) @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1008 [inlined] [3] simplify_graph!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; clean_graph::Bool) @ Pkg.Resolve C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1533 [4] simplify_graph! (repeats 2 times) @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1532 [inlined] [5] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{Pkg.Types.PackageSpec}, julia_version::VersionNumber) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:352 [6] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, level::Pkg.Types.UpgradeLevel; skip_writing_project::Bool) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:1364 [7] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; level::Pkg.Types.UpgradeLevel, mode::Pkg.Types.PackageMode, update_registry::Bool, skip_writing_project::Bool, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:341 [8] #up#55 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:161 [inlined] [9] #resolve#141 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:347 [inlined] [10] resolve @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:346 [inlined] [11] #resolve#140 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:345 [inlined] [12] top-level scope @ string:1 [13] eval @ .\boot.jl:368 [inlined] [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base .\loading.jl:1428 [15] include_string (repeats 2 times) @ .\loading.jl:1438 [inlined] [16] mainevalcmd(str::String) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150 [17] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Base .\essentials.jl:729 [18] invokelatest(::Any, ::Any, ::Vararg{Any}) @ Base .\essentials.jl:726 [19] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67 [20] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55 [21] serve_repl(sock::Sockets.TCPSocket) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185 [22] (::Main.RConnector.var"#3#5")() @ Main.RConnector .\task.jl:484 in expression starting at string:1 Backtrace: ▆ 1. └─jlmerclusterperm::jlmerclusterperm_setup(restart = FALSE, verbose = FALSE) at test-threshold_search.R:3:0 2. └─jlmerclusterperm:::setup_with_progress(verbose = verbose) 3. └─jlmerclusterperm:::set_projenv(verbose = verbose) 4. └─JuliaConnectoR::juliaEval("Pkg.resolve(io = devnull)") 5. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr) 6. ├─base::tryCatch(...) 7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 10. └─JuliaConnectoR:::doCallJulia(funName, jlargs) 11. └─JuliaConnectoR:::handleCallbacksAndOutput() ── Error ('test-timewise_statistics.R:3:1'): (code run outside of `test_that()`) ── Error: Evaluation in Julia failed. Original Julia error message: LoadError: Unsatisfiable requirements detected for package MatrixFactorizations [a3b82374]: MatrixFactorizations [a3b82374] log: ├─possible versions are: 0.0.1-2.0.0 or uninstalled ├─restricted to versions 2.0.0 by an explicit requirement, leaving only versions 2.0.0 └─restricted by julia compatibility requirements to versions: 0.0.1-1.0.0 or uninstalled — no versions left Stacktrace: [1] propagate_constraints!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; log_events::Bool) @ Pkg.Resolve C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1072 [2] propagate_constraints! (repeats 2 times) @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1008 [inlined] [3] simplify_graph!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; clean_graph::Bool) @ Pkg.Resolve C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1533 [4] simplify_graph! (repeats 2 times) @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Resolve\graphtype.jl:1532 [inlined] [5] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{Pkg.Types.PackageSpec}, julia_version::VersionNumber) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:352 [6] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, level::Pkg.Types.UpgradeLevel; skip_writing_project::Bool) @ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:1364 [7] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; level::Pkg.Types.UpgradeLevel, mode::Pkg.Types.PackageMode, update_registry::Bool, skip_writing_project::Bool, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:341 [8] #up#55 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:161 [inlined] [9] #resolve#141 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:347 [inlined] [10] resolve @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:346 [inlined] [11] #resolve#140 @ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:345 [inlined] [12] top-level scope @ string:1 [13] eval @ .\boot.jl:368 [inlined] [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base .\loading.jl:1428 [15] include_string (repeats 2 times) @ .\loading.jl:1438 [inlined] [16] mainevalcmd(str::String) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150 [17] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Base .\essentials.jl:729 [18] invokelatest(::Any, ::Any, ::Vararg{Any}) @ Base .\essentials.jl:726 [19] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67 [20] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket}) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55 [21] serve_repl(sock::Sockets.TCPSocket) @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185 [22] (::Main.RConnector.var"#3#5")() @ Main.RConnector .\task.jl:484 in expression starting at string:1 Backtrace: ▆ 1. └─jlmerclusterperm::jlmerclusterperm_setup(restart = FALSE, verbose = FALSE) at test-timewise_statistics.R:3:0 2. └─jlmerclusterperm:::setup_with_progress(verbose = verbose) 3. └─jlmerclusterperm:::set_projenv(verbose = verbose) 4. └─JuliaConnectoR::juliaEval("Pkg.resolve(io = devnull)") 5. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr) 6. ├─base::tryCatch(...) 7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 10. └─JuliaConnectoR:::doCallJulia(funName, jlargs) 11. └─JuliaConnectoR:::handleCallbacksAndOutput() [ FAIL 12 | WARN 20 | SKIP 0 | PASS 5 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... [14s] OK * checking HTML version of manual ... OK * DONE Status: 1 ERROR