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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(jlme) > > test_check("jlme") Starting Julia ... Connecting to Julia TCP server at localhost:11980 ... [1] 11980 Julia version 1.11.3 detected. No active Julia connection. Please call `jlme_setup()`. [1] FALSE julia "C:\\PROGRA~1\\Julia\\bin\\julia.exe" Starting Julia (v1.11.3) ... Activating new project at `D:\temp\2025_04_23_20_15_16_17132\Rtmp4IbuwG\jlme` Updating registry at `C:\Users\CRAN\.julia\registries\General.toml` Resolving package versions... Installed BandedMatrices ─── v1.9.4 Installed Parsers ────────── v2.8.2 Installed ProgressMeter ──── v1.10.4 Installed PDMats ─────────── v0.11.34 Installed SpecialFunctions ─ v2.5.1 Installed ForwardDiff ────── v1.0.1 Installed BSplineKit ─────── v0.19.0 Installed MixedModels ────── v4.34.1 Installed MacroTools ─────── v0.5.16 Installed Distributions ──── v0.25.119 Updating `D:\temp\2025_04_23_20_15_16_17132\Rtmp4IbuwG\jlme\Project.toml` [38e38edf] + GLM v1.9.0 [ff71e718] + MixedModels v4.34.1 [3eaba693] + StatsModels v0.7.4 Updating `D:\temp\2025_04_23_20_15_16_17132\Rtmp4IbuwG\jlme\Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.1 [69666777] + Arrow v2.8.0 [31f734f8] + ArrowTypes v2.3.0 [093aae92] + BSplineKit v0.19.0 [aae01518] + BandedMatrices v1.9.4 [c3b6d118] + BitIntegers v0.3.5 [fa961155] + CEnum v0.5.0 [5ba52731] + CodecLz4 v0.4.6 [6b39b394] + CodecZstd v0.8.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [85a47980] + Dictionaries v0.4.5 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.119 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [442a2c76] + FastGaussQuadrature v1.0.2 [1a297f60] + FillArrays v1.13.0 [f6369f11] + ForwardDiff v1.0.1 [38e38edf] + GLM v1.9.0 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [313cdc1a] + Indexing v1.1.1 [842dd82b] + InlineStrings v1.4.3 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [0f8b85d8] + JSON3 v1.14.2 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [ff71e718] + MixedModels v4.34.1 [7e9fb7ac] + MixedModelsDatasets v0.1.2 [78c3b35d] + Mocking v0.8.1 [76087f3c] + NLopt v1.1.3 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.34 [69de0a69] + Parsers v2.8.2 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [6c6a2e73] + Scratch v1.2.1 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [03a91e81] + SplitApplyCombine v1.2.3 [aedffcd0] + Static v1.2.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.4.0 [3eaba693] + StatsModels v0.7.4 [354b36f9] + StringViews v1.3.4 [856f2bd8] + StructTypes v1.11.0 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [f269a46b] + TimeZones v1.21.3 [3bb67fe8] + TranscodingStreams v0.11.3 [9d95f2ec] + TypedTables v1.4.6 [5ced341a] + Lz4_jll v1.10.1+0 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.1+2 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Precompiling project... 2000.2 ms ✓ ProgressMeter 1995.2 ms ✓ PDMats 3537.9 ms ✓ MacroTools 951.6 ms ✓ FillArrays → FillArraysPDMatsExt 691.2 ms ✓ CommonSubexpressions 4092.2 ms ✓ SpecialFunctions 1358.9 ms ✓ HypergeometricFunctions 2836.9 ms ✓ FastGaussQuadrature 2272.2 ms ✓ StatsFuns 4710.4 ms ✓ ForwardDiff 1442.6 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 11618.6 ms ✓ Parsers 3274.0 ms ✓ StatsModels 724.1 ms ✓ InlineStrings → ParsersExt 6639.4 ms ✓ Distributions 16865.9 ms ✓ BandedMatrices 1685.1 ms ✓ BandedMatrices → BandedMatricesSparseArraysExt 3479.3 ms ✓ GLM 7483.0 ms ✓ JSON3 673.8 ms ✓ JSON3 → JSON3ArrowExt 12263.2 ms ✓ BSplineKit 49864.9 ms ✓ MixedModels 22 dependencies successfully precompiled in 87 seconds. 113 already precompiled. Successfully set up Julia connection. (108s) user system elapsed 0.05 0.00 109.23 jlme 0.4.2 R Under development (unstable) (2025-04-22 r88173 ucrt) Julia Version 1.11.3 Commit d63adeda50 (2025-01-21 19:42 UTC) Build Info: Official https://julialang.org/ release Platform Info: OS: Windows (x86_64-w64-mingw32) CPU: 48 × AMD EPYC 7443 24-Core Processor WORD_SIZE: 64 LLVM: libLLVM-16.0.6 (ORCJIT, znver3) Threads: 1 default, 0 interactive, 1 GC (on 96 virtual cores) Status `D:\temp\2025_04_23_20_15_16_17132\Rtmp4IbuwG\jlme\Project.toml` [38e38edf] GLM v1.9.0 [ff71e718] MixedModels v4.34.1 [3eaba693] StatsModels v0.7.4 [1] TRUE Julia already running - skipping. Did you mean `restart = TRUE`? [1] TRUE ┌ Warning: Reverse spline for θ3 is not monotone. └ @ MixedModels C:\Users\CRAN\.julia\packages\MixedModels\bu3nA\src\profile\thetapr.jl:101 Progress: 20%|█████████ | ETA: 0:00:03 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 [ FAIL 0 | WARN 0 | SKIP 0 | PASS 43 ] > > proc.time() user system elapsed 5.17 4.31 229.46