Build250610-2348m.1 <Summary><Title>WGS of special bacterial pathogens</Title><Platform instrument_model="Illumina MiSeq">ILLUMINA</Platform><Statistics total_runs="1" total_spots="784515" total_bases="375049838" total_size="241838959" load_done="true" cluster_name="public"/></Summary><Submitter acc="SRA2139144" center_name="LACPHL" contact_name="Emily Fox" lab_name="Public Health Laboratories"/><Experiment acc="SRX28975768" ver="1" status="public" name="WGS of special bacterial pathogens"/><Study acc="SRP523197" name="Genome sequencing and assembly of special bacterial pathogens"/><Organism taxid="1717" ScientificName="Corynebacterium diphtheriae"/><Sample acc="SRS25196377" name=""/><Instrument ILLUMINA="Illumina MiSeq"/><Library_descriptor><LIBRARY_NAME>LACPHL-SPEC-2025-00538</LIBRARY_NAME><LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY><LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION><LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT></Library_descriptor><Bioproject>PRJNA1142047</Bioproject><Biosample>SAMN48794373</Biosample> <Run acc="SRR33752663" total_spots="784515" total_bases="375049838" load_done="true" is_public="true" cluster_name="public" static_data_available="true"/> 2025/05/29 2025/05/29 <Summary><Title>WGS of special bacterial pathogens</Title><Platform instrument_model="Illumina MiSeq">ILLUMINA</Platform><Statistics total_runs="1" total_spots="507238" total_bases="247135545" total_size="149765541" load_done="true" cluster_name="public"/></Summary><Submitter acc="SRA2134291" center_name="LACPHL" contact_name="Emily Fox" lab_name="Public Health Laboratories"/><Experiment acc="SRX28887457" ver="1" status="public" name="WGS of special bacterial pathogens"/><Study acc="SRP523197" name="Genome sequencing and assembly of special bacterial pathogens"/><Organism taxid="1717" ScientificName="Corynebacterium diphtheriae"/><Sample acc="SRS25113588" name=""/><Instrument ILLUMINA="Illumina MiSeq"/><Library_descriptor><LIBRARY_NAME>LACPHL-SPEC-2025-00518</LIBRARY_NAME><LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY><LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION><LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT></Library_descriptor><Bioproject>PRJNA1142047</Bioproject><Biosample>SAMN48672232</Biosample> <Run acc="SRR33660498" total_spots="507238" total_bases="247135545" load_done="true" is_public="true" cluster_name="public" static_data_available="true"/> 2025/05/21 2025/05/21 <Summary><Title>WGS of special bacterial pathogens</Title><Platform instrument_model="Illumina MiSeq">ILLUMINA</Platform><Statistics total_runs="1" total_spots="688849" total_bases="335557686" total_size="206846655" load_done="true" cluster_name="public"/></Summary><Submitter acc="SRA2134291" center_name="LACPHL" contact_name="Emily Fox" lab_name="Public Health Laboratories"/><Experiment acc="SRX28887442" ver="1" status="public" name="WGS of special bacterial pathogens"/><Study acc="SRP523197" name="Genome sequencing and assembly of special bacterial pathogens"/><Organism taxid="1717" ScientificName="Corynebacterium diphtheriae"/><Sample acc="SRS25113573" name=""/><Instrument ILLUMINA="Illumina MiSeq"/><Library_descriptor><LIBRARY_NAME>LACPHL-SPEC-2025-00504</LIBRARY_NAME><LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY><LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION><LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT></Library_descriptor><Bioproject>PRJNA1142047</Bioproject><Biosample>SAMN48672218</Biosample> <Run acc="SRR33660513" total_spots="688849" total_bases="335557686" load_done="true" is_public="true" cluster_name="public" static_data_available="true"/> 2025/05/21 2025/05/21 <Summary><Title>WGS of special bacterial pathogens</Title><Platform instrument_model="Illumina MiSeq">ILLUMINA</Platform><Statistics total_runs="1" total_spots="262760" total_bases="126943770" total_size="85952768" load_done="true" cluster_name="public"/></Summary><Submitter acc="SRA2129520" center_name="LACPHL" contact_name="Emily Fox" lab_name="Public Health Laboratories"/><Experiment acc="SRX28791883" ver="1" status="public" name="WGS of special bacterial pathogens"/><Study acc="SRP523197" name="Genome sequencing and assembly of special bacterial pathogens"/><Organism taxid="1717" ScientificName="Corynebacterium diphtheriae"/><Sample acc="SRS25029822" name=""/><Instrument ILLUMINA="Illumina MiSeq"/><Library_descriptor><LIBRARY_NAME>LACPHL-SPEC-2025-00491</LIBRARY_NAME><LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY><LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION><LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT></Library_descriptor><Bioproject>PRJNA1142047</Bioproject><Biosample>SAMN48485174</Biosample> <Run acc="SRR33561808" total_spots="262760" total_bases="126943770" load_done="true" is_public="true" cluster_name="public" static_data_available="true"/> 2025/05/14 2025/05/14 <Summary><Title>Illumina paired-end whole genome sequencing of Corynebacterium diphtheriae</Title><Platform instrument_model="NextSeq 2000">ILLUMINA</Platform><Statistics total_runs="1" total_spots="732874" total_bases="213919026" total_size="75441810" load_done="true" cluster_name="public"/></Summary><Submitter acc="SRA2124195" center_name="CDPHE-COVID" contact_name="Samuel Noah Baird" lab_name=""/><Experiment acc="SRX28678977" ver="1" status="public" name="Illumina paired-end whole genome sequencing of Corynebacterium diphtheriae"/><Study acc="SRP447891" name="Bacterial whole genome sequencing Raw sequence reads"/><Organism taxid="1717" ScientificName="Corynebacterium diphtheriae"/><Sample acc="SRS24946594" name=""/><Instrument ILLUMINA="NextSeq 2000"/><Library_descriptor><LIBRARY_NAME>2025CJ-00048</LIBRARY_NAME><LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY><LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION><LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT></Library_descriptor><Bioproject>PRJNA991232</Bioproject><Biosample>SAMN48349095</Biosample> <Run acc="SRR33438135" total_spots="732874" total_bases="213919026" load_done="true" is_public="true" cluster_name="public" static_data_available="true"/> 2025/05/05 2025/05/05 <Summary><Title>GridION sequencing</Title><Platform instrument_model="GridION">OXFORD_NANOPORE</Platform><Statistics total_runs="1" total_spots="0" total_bases="0" total_size="0" cluster_name="public"/></Summary><Submitter acc="ERA33104222" center_name="Institut Pasteur" contact_name="European Nucleotide Archive" lab_name="European Nucleotide Archive"/><Experiment acc="ERX14310299" ver="1" status="public" name="GridION sequencing"/><Study acc="ERP172116" name="Genotyping of respiratory pathogens via ONT R10"/><Organism taxid="1717" ScientificName="Corynebacterium diphtheriae"/><Sample acc="ERS24300105" name=""/><Instrument OXFORD_NANOPORE="GridION"/><Library_descriptor><LIBRARY_NAME/><LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY><LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT> <SINGLE/> </LIBRARY_LAYOUT></Library_descriptor><Bioproject>PRJEB89064</Bioproject><Biosample>SAMEA118215430</Biosample> <Run acc="ERR14905993" total_spots="" total_bases="" load_done="false" is_public="true" cluster_name="public" static_data_available="true" unavailable="true"/> 2025/04/30 2025/04/30 <Summary><Title>GridION sequencing</Title><Platform instrument_model="GridION">OXFORD_NANOPORE</Platform><Statistics total_runs="1" total_spots="0" total_bases="0" total_size="0" cluster_name="public"/></Summary><Submitter acc="ERA33104222" center_name="Institut Pasteur" contact_name="European Nucleotide Archive" lab_name="European Nucleotide Archive"/><Experiment acc="ERX14310302" ver="1" status="public" name="GridION sequencing"/><Study acc="ERP172116" name="Genotyping of respiratory pathogens via ONT R10"/><Organism taxid="1717" ScientificName="Corynebacterium diphtheriae"/><Sample acc="ERS24300108" name=""/><Instrument OXFORD_NANOPORE="GridION"/><Library_descriptor><LIBRARY_NAME/><LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY><LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT> <SINGLE/> </LIBRARY_LAYOUT></Library_descriptor><Bioproject>PRJEB89064</Bioproject><Biosample>SAMEA118215433</Biosample> <Run acc="ERR14905996" total_spots="" total_bases="" load_done="false" is_public="true" cluster_name="public" static_data_available="true" unavailable="true"/> 2025/04/30 2025/04/30 <Summary><Title>GridION sequencing</Title><Platform instrument_model="GridION">OXFORD_NANOPORE</Platform><Statistics total_runs="1" total_spots="0" total_bases="0" total_size="0" cluster_name="public"/></Summary><Submitter acc="ERA33104222" center_name="Institut Pasteur" contact_name="European Nucleotide Archive" lab_name="European Nucleotide Archive"/><Experiment acc="ERX14310303" ver="1" status="public" name="GridION sequencing"/><Study acc="ERP172116" name="Genotyping of respiratory pathogens via ONT R10"/><Organism taxid="1717" ScientificName="Corynebacterium diphtheriae"/><Sample acc="ERS24300109" name=""/><Instrument OXFORD_NANOPORE="GridION"/><Library_descriptor><LIBRARY_NAME/><LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY><LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT> <SINGLE/> </LIBRARY_LAYOUT></Library_descriptor><Bioproject>PRJEB89064</Bioproject><Biosample>SAMEA118215434</Biosample> <Run acc="ERR14905997" total_spots="" total_bases="" load_done="false" is_public="true" cluster_name="public" static_data_available="true" unavailable="true"/> 2025/04/30 2025/04/30 <Summary><Title>Illumina raw reads of isolate Patient-C of Corynebacterium diphtheriae</Title><Platform instrument_model="NextSeq 500">ILLUMINA</Platform><Statistics total_runs="1" total_spots="3251765" total_bases="982033030" total_size="435598206" load_done="true" cluster_name="public"/></Summary><Submitter acc="SRA2121035" center_name="University Hospital Basel" contact_name="Pascal Schlaepfer" lab_name="Theragnostics, Laboratory Medicine"/><Experiment acc="SRX28615093" ver="1" status="public" name="Illumina raw reads of isolate Patient-C of Corynebacterium diphtheriae"/><Study acc="SRP582181" name="Emergence of toxigenic Corynebacterium diphtheriae infections in low-risk patients in Switzerland - report of an outbreak investigation"/><Organism taxid="1717" ScientificName="Corynebacterium diphtheriae"/><Sample acc="SRS24887039" name=""/><Instrument ILLUMINA="NextSeq 500"/><Library_descriptor><LIBRARY_NAME>9</LIBRARY_NAME><LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY><LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION><LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT></Library_descriptor><Bioproject>PRJNA1123191</Bioproject><Biosample>SAMN48197610</Biosample> <Run acc="SRR33371480" total_spots="3251765" total_bases="982033030" load_done="true" is_public="true" cluster_name="public" static_data_available="true"/> 2025/04/29 2025/04/29 <Summary><Title>Illumina raw reads of isolate Patient-B of Corynebacterium diphtheriae</Title><Platform instrument_model="NextSeq 500">ILLUMINA</Platform><Statistics total_runs="1" total_spots="3245193" total_bases="980048286" total_size="423203381" load_done="true" cluster_name="public"/></Summary><Submitter acc="SRA2121035" center_name="University Hospital Basel" contact_name="Pascal Schlaepfer" lab_name="Theragnostics, Laboratory Medicine"/><Experiment acc="SRX28615092" ver="1" status="public" name="Illumina raw reads of isolate Patient-B of Corynebacterium diphtheriae"/><Study acc="SRP582181" name="Emergence of toxigenic Corynebacterium diphtheriae infections in low-risk patients in Switzerland - report of an outbreak investigation"/><Organism taxid="1717" ScientificName="Corynebacterium diphtheriae"/><Sample acc="SRS24887037" name=""/><Instrument ILLUMINA="NextSeq 500"/><Library_descriptor><LIBRARY_NAME>8</LIBRARY_NAME><LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY><LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION><LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT></Library_descriptor><Bioproject>PRJNA1123191</Bioproject><Biosample>SAMN48197609</Biosample> <Run acc="SRR33371481" total_spots="3245193" total_bases="980048286" load_done="true" is_public="true" cluster_name="public" static_data_available="true"/> 2025/04/29 2025/04/29 <Summary><Title>Illumina raw reads of isolate AS-05-wound of Corynebacterium diphtheriae</Title><Platform instrument_model="NextSeq 500">ILLUMINA</Platform><Statistics total_runs="1" total_spots="9922587" total_bases="2996621274" total_size="1292476507" load_done="true" cluster_name="public"/></Summary><Submitter acc="SRA2121035" center_name="University Hospital Basel" contact_name="Pascal Schlaepfer" lab_name="Theragnostics, Laboratory Medicine"/><Experiment acc="SRX28615091" ver="1" status="public" name="Illumina raw reads of isolate AS-05-wound of Corynebacterium diphtheriae"/><Study acc="SRP582181" name="Emergence of toxigenic Corynebacterium diphtheriae infections in low-risk patients in Switzerland - report of an outbreak investigation"/><Organism taxid="1717" ScientificName="Corynebacterium diphtheriae"/><Sample acc="SRS24887036" name=""/><Instrument ILLUMINA="NextSeq 500"/><Library_descriptor><LIBRARY_NAME>7</LIBRARY_NAME><LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY><LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION><LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT></Library_descriptor><Bioproject>PRJNA1123191</Bioproject><Biosample>SAMN48197608</Biosample> <Run acc="SRR33371482" total_spots="9922587" total_bases="2996621274" load_done="true" is_public="true" cluster_name="public" static_data_available="true"/> 2025/04/29 2025/04/29 <Summary><Title>Illumina raw reads of isolate AS-04-wound of Corynebacterium diphtheriae</Title><Platform instrument_model="NextSeq 500">ILLUMINA</Platform><Statistics total_runs="1" total_spots="3790966" total_bases="1144871732" total_size="506743870" load_done="true" cluster_name="public"/></Summary><Submitter acc="SRA2121035" center_name="University Hospital Basel" contact_name="Pascal Schlaepfer" lab_name="Theragnostics, Laboratory Medicine"/><Experiment acc="SRX28615090" ver="1" status="public" name="Illumina raw reads of isolate AS-04-wound of Corynebacterium diphtheriae"/><Study acc="SRP582181" name="Emergence of toxigenic Corynebacterium diphtheriae infections in low-risk patients in Switzerland - report of an outbreak investigation"/><Organism taxid="1717" ScientificName="Corynebacterium diphtheriae"/><Sample acc="SRS24887038" name=""/><Instrument ILLUMINA="NextSeq 500"/><Library_descriptor><LIBRARY_NAME>6</LIBRARY_NAME><LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY><LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION><LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT></Library_descriptor><Bioproject>PRJNA1123191</Bioproject><Biosample>SAMN48197607</Biosample> <Run acc="SRR33371483" total_spots="3790966" total_bases="1144871732" load_done="true" is_public="true" cluster_name="public" static_data_available="true"/> 2025/04/29 2025/04/29 <Summary><Title>Illumina raw reads of isolate AS-03-wound of Corynebacterium diphtheriae</Title><Platform instrument_model="NextSeq 500">ILLUMINA</Platform><Statistics total_runs="1" total_spots="7559953" total_bases="2283105806" total_size="984620103" load_done="true" cluster_name="public"/></Summary><Submitter acc="SRA2121035" center_name="University Hospital Basel" contact_name="Pascal Schlaepfer" lab_name="Theragnostics, Laboratory Medicine"/><Experiment acc="SRX28615089" ver="1" status="public" name="Illumina raw reads of isolate AS-03-wound of Corynebacterium diphtheriae"/><Study acc="SRP582181" name="Emergence of toxigenic Corynebacterium diphtheriae infections in low-risk patients in Switzerland - report of an outbreak investigation"/><Organism taxid="1717" ScientificName="Corynebacterium diphtheriae"/><Sample acc="SRS24887034" name=""/><Instrument ILLUMINA="NextSeq 500"/><Library_descriptor><LIBRARY_NAME>5</LIBRARY_NAME><LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY><LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION><LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT></Library_descriptor><Bioproject>PRJNA1123191</Bioproject><Biosample>SAMN48197606</Biosample> <Run acc="SRR33371484" total_spots="7559953" total_bases="2283105806" load_done="true" is_public="true" cluster_name="public" static_data_available="true"/> 2025/04/29 2025/04/29 <Summary><Title>Illumina raw reads of isolate AS-03-throat of Corynebacterium diphtheriae</Title><Platform instrument_model="NextSeq 500">ILLUMINA</Platform><Statistics total_runs="1" total_spots="4116479" total_bases="1243176658" total_size="551273410" load_done="true" cluster_name="public"/></Summary><Submitter acc="SRA2121035" center_name="University Hospital Basel" contact_name="Pascal Schlaepfer" lab_name="Theragnostics, Laboratory Medicine"/><Experiment acc="SRX28615088" ver="1" status="public" name="Illumina raw reads of isolate AS-03-throat of Corynebacterium diphtheriae"/><Study acc="SRP582181" name="Emergence of toxigenic Corynebacterium diphtheriae infections in low-risk patients in Switzerland - report of an outbreak investigation"/><Organism taxid="1717" ScientificName="Corynebacterium diphtheriae"/><Sample acc="SRS24887033" name=""/><Instrument ILLUMINA="NextSeq 500"/><Library_descriptor><LIBRARY_NAME>4</LIBRARY_NAME><LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY><LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION><LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT></Library_descriptor><Bioproject>PRJNA1123191</Bioproject><Biosample>SAMN48197605</Biosample> <Run acc="SRR33371485" total_spots="4116479" total_bases="1243176658" load_done="true" is_public="true" cluster_name="public" static_data_available="true"/> 2025/04/29 2025/04/29 <Summary><Title>Illumina raw reads of isolate AS-02-throat-day-53 of Corynebacterium diphtheriae</Title><Platform instrument_model="NextSeq 500">ILLUMINA</Platform><Statistics total_runs="1" total_spots="3213286" total_bases="970412372" total_size="421543427" load_done="true" cluster_name="public"/></Summary><Submitter acc="SRA2121035" center_name="University Hospital Basel" contact_name="Pascal Schlaepfer" lab_name="Theragnostics, Laboratory Medicine"/><Experiment acc="SRX28615087" ver="1" status="public" name="Illumina raw reads of isolate AS-02-throat-day-53 of Corynebacterium diphtheriae"/><Study acc="SRP582181" name="Emergence of toxigenic Corynebacterium diphtheriae infections in low-risk patients in Switzerland - report of an outbreak investigation"/><Organism taxid="1717" ScientificName="Corynebacterium diphtheriae"/><Sample acc="SRS24887030" name=""/><Instrument ILLUMINA="NextSeq 500"/><Library_descriptor><LIBRARY_NAME>3</LIBRARY_NAME><LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY><LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION><LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT></Library_descriptor><Bioproject>PRJNA1123191</Bioproject><Biosample>SAMN48197604</Biosample> <Run acc="SRR33371486" total_spots="3213286" total_bases="970412372" load_done="true" is_public="true" cluster_name="public" static_data_available="true"/> 2025/04/29 2025/04/29 <Summary><Title>Illumina raw reads of isolate AS-02-throat-day-1 of Corynebacterium diphtheriae</Title><Platform instrument_model="NextSeq 500">ILLUMINA</Platform><Statistics total_runs="1" total_spots="7010709" total_bases="2117234118" total_size="910669703" load_done="true" cluster_name="public"/></Summary><Submitter acc="SRA2121035" center_name="University Hospital Basel" contact_name="Pascal Schlaepfer" lab_name="Theragnostics, Laboratory Medicine"/><Experiment acc="SRX28615086" ver="1" status="public" name="Illumina raw reads of isolate AS-02-throat-day-1 of Corynebacterium diphtheriae"/><Study acc="SRP582181" name="Emergence of toxigenic Corynebacterium diphtheriae infections in low-risk patients in Switzerland - report of an outbreak investigation"/><Organism taxid="1717" ScientificName="Corynebacterium diphtheriae"/><Sample acc="SRS24887031" name=""/><Instrument ILLUMINA="NextSeq 500"/><Library_descriptor><LIBRARY_NAME>2</LIBRARY_NAME><LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY><LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION><LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT></Library_descriptor><Bioproject>PRJNA1123191</Bioproject><Biosample>SAMN48197603</Biosample> <Run acc="SRR33371487" total_spots="7010709" total_bases="2117234118" load_done="true" is_public="true" cluster_name="public" static_data_available="true"/> 2025/04/29 2025/04/29 <Summary><Title>Illumina raw reads of isolate AS-01-throat of Corynebacterium diphtheriae</Title><Platform instrument_model="NextSeq 500">ILLUMINA</Platform><Statistics total_runs="1" total_spots="12665616" total_bases="3825016032" total_size="1655128086" load_done="true" cluster_name="public"/></Summary><Submitter acc="SRA2121035" center_name="University Hospital Basel" contact_name="Pascal Schlaepfer" lab_name="Theragnostics, Laboratory Medicine"/><Experiment acc="SRX28615085" ver="1" status="public" name="Illumina raw reads of isolate AS-01-throat of Corynebacterium diphtheriae"/><Study acc="SRP582181" name="Emergence of toxigenic Corynebacterium diphtheriae infections in low-risk patients in Switzerland - report of an outbreak investigation"/><Organism taxid="1717" ScientificName="Corynebacterium diphtheriae"/><Sample acc="SRS24887029" name=""/><Instrument ILLUMINA="NextSeq 500"/><Library_descriptor><LIBRARY_NAME>1</LIBRARY_NAME><LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY><LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION><LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT></Library_descriptor><Bioproject>PRJNA1123191</Bioproject><Biosample>SAMN48197602</Biosample> <Run acc="SRR33371488" total_spots="12665616" total_bases="3825016032" load_done="true" is_public="true" cluster_name="public" static_data_available="true"/> 2025/04/29 2025/04/29 <Summary><Title>Whole genome sequencing of other Enterobacteriales and Gram negative pathogens as part of MDU-PHL surveillance activities in Victoria, Australia Raw sequence reads</Title><Platform instrument_model="NextSeq 550">ILLUMINA</Platform><Statistics total_runs="1" total_spots="1356654" total_bases="402322233" total_size="188063039" load_done="true" cluster_name="public"/></Summary><Submitter acc="SRA2116286" center_name="MDUPHL" contact_name="Raquel Cooper" lab_name="Microbiological Diagnostic Unit Public Health Labo"/><Experiment acc="SRX28488174" ver="1" status="public" name="Whole genome sequencing of other Enterobacteriales and Gram negative pathogens as part of MDU-PHL surveillance activities in Victoria, Australia Raw sequence reads"/><Study acc="SRP403292" name="Whole genome sequencing of other Enterobacteriales and Gram negative pathogens as part of MDU-PHL surveillance activities in Victoria, Australia Raw sequence reads"/><Organism taxid="1717" ScientificName="Corynebacterium diphtheriae"/><Sample acc="SRS24805626" name=""/><Instrument ILLUMINA="NextSeq 550"/><Library_descriptor><LIBRARY_NAME>AUSMDU00089046</LIBRARY_NAME><LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY><LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION><LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT></Library_descriptor><Bioproject>PRJNA870170</Bioproject><Biosample>SAMN48025652</Biosample> <Run acc="SRR33241604" total_spots="1356654" total_bases="402322233" load_done="true" is_public="true" cluster_name="public" static_data_available="true"/> 2025/04/21 2025/04/21 <Summary><Title>Whole genome sequencing of other Enterobacteriales and Gram negative pathogens as part of MDU-PHL surveillance activities in Victoria, Australia Raw sequence reads</Title><Platform instrument_model="NextSeq 550">ILLUMINA</Platform><Statistics total_runs="1" total_spots="1145326" total_bases="338955224" total_size="159651715" load_done="true" cluster_name="public"/></Summary><Submitter acc="SRA2116286" center_name="MDUPHL" contact_name="Raquel Cooper" lab_name="Microbiological Diagnostic Unit Public Health Labo"/><Experiment acc="SRX28488173" ver="1" status="public" name="Whole genome sequencing of other Enterobacteriales and Gram negative pathogens as part of MDU-PHL surveillance activities in Victoria, Australia Raw sequence reads"/><Study acc="SRP403292" name="Whole genome sequencing of other Enterobacteriales and Gram negative pathogens as part of MDU-PHL surveillance activities in Victoria, Australia Raw sequence reads"/><Organism taxid="1717" ScientificName="Corynebacterium diphtheriae"/><Sample acc="SRS24805625" name=""/><Instrument ILLUMINA="NextSeq 550"/><Library_descriptor><LIBRARY_NAME>AUSMDU00089045</LIBRARY_NAME><LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY><LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION><LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT></Library_descriptor><Bioproject>PRJNA870170</Bioproject><Biosample>SAMN48025651</Biosample> <Run acc="SRR33241605" total_spots="1145326" total_bases="338955224" load_done="true" is_public="true" cluster_name="public" static_data_available="true"/> 2025/04/21 2025/04/21 <Summary><Title>Whole genome sequencing of other Enterobacteriales and Gram negative pathogens as part of MDU-PHL surveillance activities in Victoria, Australia Raw sequence reads</Title><Platform instrument_model="NextSeq 500">ILLUMINA</Platform><Statistics total_runs="1" total_spots="760019" total_bases="223932641" total_size="101091996" load_done="true" cluster_name="public"/></Summary><Submitter acc="SRA2116286" center_name="MDUPHL" contact_name="Raquel Cooper" lab_name="Microbiological Diagnostic Unit Public Health Labo"/><Experiment acc="SRX28488172" ver="1" status="public" name="Whole genome sequencing of other Enterobacteriales and Gram negative pathogens as part of MDU-PHL surveillance activities in Victoria, Australia Raw sequence reads"/><Study acc="SRP403292" name="Whole genome sequencing of other Enterobacteriales and Gram negative pathogens as part of MDU-PHL surveillance activities in Victoria, Australia Raw sequence reads"/><Organism taxid="1717" ScientificName="Corynebacterium diphtheriae"/><Sample acc="SRS24805624" name=""/><Instrument ILLUMINA="NextSeq 500"/><Library_descriptor><LIBRARY_NAME>AUSMDU00088026</LIBRARY_NAME><LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY><LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION><LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT></Library_descriptor><Bioproject>PRJNA870170</Bioproject><Biosample>SAMN48025650</Biosample> <Run acc="SRR33241606" total_spots="760019" total_bases="223932641" load_done="true" is_public="true" cluster_name="public" static_data_available="true"/> 2025/04/21 2025/04/21