installing dependencies ‘gcatest’, ‘genio’, ‘lfa’

begin installing package ‘genio’
* installing *source* package ‘genio’ ...
** this is package ‘genio’ version ‘1.1.2’
** package ‘genio’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpC5MgTh/R.INSTALL2ef31e4458ed4e/genio/src'
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-noLD/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-noLD/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c count_lines_cpp.cpp -o count_lines_cpp.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-noLD/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c read_bed_cpp.cpp -o read_bed_cpp.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-noLD/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c write_bed_cpp.cpp -o write_bed_cpp.o
g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-noLD/lib -Wl,-O1 -o genio.so RcppExports.o count_lines_cpp.o read_bed_cpp.o write_bed_cpp.o -L/home/hornik/tmp/R-d-gcc-noLD/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpC5MgTh/R.INSTALL2ef31e4458ed4e/genio/src'
installing to /home/hornik/tmp/CRAN_special_noLD/Library/00LOCK-genio/00new/genio/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (genio)
begin installing package ‘lfa’
* installing *source* package ‘lfa’ ...
** this is package ‘lfa’ version ‘2.11.3’
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpplzcb4/R.INSTALL2f030e6e87dc4a/lfa/src'
gcc-15 -I"/home/hornik/tmp/R-d-gcc-noLD/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c fastmat.c -o fastmat.o
gcc-15 -I"/home/hornik/tmp/R-d-gcc-noLD/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c lfa-init.c -o lfa-init.o
gcc-15 -I"/home/hornik/tmp/R-d-gcc-noLD/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c lfa.c -o lfa.o
gcc-15 -I"/home/hornik/tmp/R-d-gcc-noLD/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c lreg.c -o lreg.o
gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-noLD/lib -Wl,-O1 -o lfa.so fastmat.o lfa-init.o lfa.o lreg.o -llapack -L/home/hornik/tmp/R-d-gcc-noLD/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-noLD/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpplzcb4/R.INSTALL2f030e6e87dc4a/lfa/src'
installing to /home/hornik/tmp/CRAN_special_noLD/Library/00LOCK-lfa/00new/lfa/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lfa)
begin installing package ‘gcatest’
* installing *source* package ‘gcatest’ ...
** this is package ‘gcatest’ version ‘2.11.1’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gcatest)

checking jackstraw_1.3.21.tar.gz ...

Depends:
Package: jackstraw
  Depends: R (>= 3.0.0)
  Imports: methods, stats, stats4, corpcor, irlba, rsvd, ClusterR,
    cluster, BEDMatrix, genio (>= 1.0.15.9000)

Timings:
            user system elapsed
jackstraw 55.879  4.985  65.946

Results:
Check status summary:
                  NOTE
  Source packages    1

Check results summary:
jackstraw ... NOTE
* checking CRAN incoming feasibility ... [7s/9s] NOTE