R Under development (unstable) (2025-06-03 r88266 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
> 
> library(testthat)
> library(itol.toolkit)

── Loading ────────────────────────────────────────────── itol.toolkit 1.1.10 ──

If you use the itol.toolkit package in published research, please cite:

Zhou, T., Xu, K., Zhao, F., Liu, W., Li, L., Hua, Z., & Zhou, X. (2023).
itol.toolkit accelerates working with iTOL (Interactive Tree of Life) by an
automated generation of annotation files. Bioinformatics, 39(6), btad339.
> 
> test_check("itol.toolkit")
[1] "DATASET_COLORSTRIP"
Using default color pattern: table2itol
[1] "DATASET_COLORSTRIP"
Using default color pattern: table2itol
[1] "DATASET_COLORSTRIP"
Using default color pattern: table2itol
[1] "DATASET_COLORSTRIP"
Using default color pattern: table2itol
[1] "DATASET_HEATMAP"
Using the first column as id: templates
[1] "DATASET_HEATMAP"
Using the first column as id: templates
[1] "DATASET_DOMAINS"
Using the first column as id: variable
Using following column as length parameter: length
Using following column as start parameter: start
Using following column as end parameter: end
Identifying data column to auto setup color parameter
Using default color pattern: table2itol
Identifying data column to auto setup shape parameter
[1] "DATASET_COLORSTRIP"
Using default color pattern: table2itol
[1] "DATASET_COLORSTRIP"
Using default color pattern: table2itol
[1] "DATASET_COLORSTRIP"
Using default color pattern: table2itol
[1] "COLLAPSE"
[1] "COLLAPSE"
[1] "PRUNE"
[1] "PRUNE"
[1] "SPACING"
[1] "SPACING"
[1] "SPACING"
[1] "SPACING"
Using the first column as id: template
[1] "TREE_COLORS"
Using the first column as id: template
Using default color pattern: table2itol
[1] "TREE_COLORS"
[1] "TREE_COLORS"
Using default color pattern: table2itol
[1] "TREE_COLORS"
Using the first column as id: template
[1] "TREE_COLORS"
Using the first column as id: template
Using default color pattern: table2itol
[1] "TREE_COLORS"
Using the first column as id: template
Using following column as subtype parameter: subtype
[1] "TREE_COLORS"
Using the first column as id: template
Using following column as subtype parameter: subtype
[1] "TREE_COLORS"
Using the first column as id: V1
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 59 ]

[ FAIL 0 | WARN 2 | SKIP 0 | PASS 59 ]
> 
> proc.time()
   user  system elapsed 
   3.48    0.71    4.18