### * Setup new_networkModel <- function() { isotracer::new_networkModel(quiet = TRUE) } ### * priors() test_that("priors() works as expected", { exp <- tibble::tribble( ~time.day, ~species, ~biomass, ~prop15N, ~treatment, 0, "NH4", 0.205, 0.739, "light", 2, "NH4", 0.232, 0.403, "light", 4, "NH4", NA, 0.199, "light", 6, "NH4", NA, 0.136, "light", 8, "NH4", 0.306, NA, "light", 10, "NH4", 0.323, 0.0506, "light", 0, "algae", 0.869, 0.00305, "light", 2, "algae", NA, 0.0875, "light", 4, "algae", 0.83, 0.131, "light", 6, "algae", 0.706, NA, "light", 10, "algae", 0.666, 0.0991, "light", 0, "daphnia", 2.13, 0.00415, "light", 2, "daphnia", 1.99, NA, "light", 4, "daphnia", 1.97, 0.0122, "light", 6, "daphnia", NA, 0.0284, "light", 8, "daphnia", NA, 0.0439, "light", 10, "daphnia", 1.9, 0.0368, "light", 0, "NH4", 0.474, 0.98, "dark", 2, "NH4", 0.455, 0.67, "dark", 4, "NH4", 0.595, 0.405, "dark", 6, "NH4", NA, 0.422, "dark", 10, "NH4", 0.682, 0.252, "dark", 0, "algae", 1.06, 0.00455, "dark", 2, "algae", 1, 0.0637, "dark", 4, "algae", 0.862, 0.0964, "dark", 6, "algae", NA, 0.222, "dark", 8, "algae", NA, 0.171, "dark", 10, "algae", 0.705, 0.182, "dark", 0, "daphnia", 1.19, 0.00315, "dark", 4, "daphnia", 1.73, 0.0204, "dark", 6, "daphnia", 1.75, NA, "dark", 8, "daphnia", 1.54, 0.0598, "dark", 10, "daphnia", 1.65, 0.0824, "dark" ) inits <- exp %>% dplyr::filter(time.day == 0) obs <- exp %>% dplyr::filter(time.day > 0) m <- new_networkModel() %>% set_topo("NH4 -> algae -> daphnia -> NH4") %>% set_init(inits, comp = "species", size = "biomass", prop = "prop15N", group_by = "treatment") %>% set_obs(obs, comp = "species", size = "biomass", prop = "prop15N", time = "time.day", group_by = "treatment") p <- priors(m) expect_is(p, c("tbl_df", "tbl", "data.frame")) expect_equal(dim(p), c(8, 2)) expect_setequal(p$in_model, c("eta", "lambda_algae", "lambda_daphnia", "lambda_NH4", "upsilon_algae_to_daphnia", "upsilon_daphnia_to_NH4", "upsilon_NH4_to_algae", "zeta")) })