* using log directory ‘/srv/hornik/tmp/CRAN_pretest/irrCAC.Rcheck’ * using R Under development (unstable) (2026-04-19 r89916) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 21.1.8 (3+b1) Debian flang version 21.1.8 (3+b1) * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * current time: 2026-04-20 10:53:04 UTC * checking for file ‘irrCAC/DESCRIPTION’ ... OK * this is package ‘irrCAC’ version ‘1.3’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/4s] NOTE Maintainer: ‘Kilem L. Gwet ’ New submission Package was archived on CRAN Possibly misspelled words in DESCRIPTION: Bangdiwala's (11:98) CAC (7:49, 9:17, 9:56) Fleiss (10:3) Gwet's (10:48) Krippendorff's (10:81) Prediger (10:26) CRAN repository db overrides: X-CRAN-Comment: Archived on 2026-04-10 as issues were not corrected despite reminders. No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = c("Kilem", "L."), family = "Gwet", role = c("aut", "cre"), email = "gwet@agreestat.com"), person(family = "Ph.D.", role = "aut")) as necessary. Found the following (possibly) invalid URLs: URL: https://www.amazon.com/Handbook-Inter-Rater-Reliability-Definitive-Measuring/dp/0970806280/ From: inst/doc/benchmarking.html inst/doc/overview.html inst/doc/weighting.html README.md Status: 500 Message: Internal Server Error The Description field should not start with the package name, 'This package' or similar. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘irrCAC’ can be installed ... [3s/3s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [6s/6s] NOTE bangdiwala2RR.fn: no visible global function definition for ‘count’ bangdiwala2RR.fn: no visible global function definition for ‘drop_na’ freq.supp.fn: no visible global function definition for ‘setNames’ freq.supp.fn: no visible global function definition for ‘as_tibble’ long2wide.fn: no visible global function definition for ‘drop_na’ long2wide.fn: no visible global function definition for ‘str_trim’ long2wide.fn: no visible global function definition for ‘as_tibble’ long2wide.fn: no visible global function definition for ‘mutate’ long2wide.fn: no visible global function definition for ‘pivot_wider’ long2wide.fn: no visible binding for global variable ‘n’ long2wide.fn: no visible global function definition for ‘select’ long2wide.fn: no visible global function definition for ‘all_of’ Undefined global functions or variables: all_of as_tibble count drop_na mutate n pivot_wider select setNames str_trim Consider adding importFrom("stats", "setNames") to your NAMESPACE file. * checking Rd files ... [0s/0s] NOTE prepare_Rd: altman.bf.Rd:19-21: Dropping empty section \value checkRd: (-1) landis.koch.bf.Rd:17: Escaped LaTeX specials: \& * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Documented arguments not in \usage in Rd file 'bangdiwala.table.Rd': ‘weights’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... ERROR Warning: parse error in file 'irrCAC-Ex.R': 5: unexpected symbol 40: 41: The dataset ^ ** will not attempt to run examples * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... SKIPPED * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [3s/3s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘benchmarking.Rmd’ using rmarkdown --- finished re-building ‘benchmarking.Rmd’ --- re-building ‘overview.Rmd’ using rmarkdown Data sets in package 'irrCAC': agree.cac3rd (agreeCAC3rd) Dataset showing the distribution of 6 raters by psychiatric condition agree.contingency (agreeContingency) Dataset representing a 10x10 contingency table agreeCAC Ratings of 15 subjects from 4 raters altman Dataset describing the Altman's Benchmarking Scale cac.ben.gerry Ratings of 12 units from 2 raters named Ben and Gerry cac.dist.g1g2 Distribution of 4 raters by subject and by category, for 14 Subjects that belong to 2 groups "G1" and "G2" cac.dist4cat Distribution of 4 raters by Category and Subject - Subjects allocated in 2 groups A and B. cac.raw.g1g2 Dataset of raw ratings from 4 Raters on 14 Subjects that belong to 2 groups named "G1" and "G2" cac.raw.gender Rating Data from 4 Raters and 15 human Subjects, 9 of whom are female and 6 males. cac.raw2raters Dataset of raw ratings by 2 raters and 12 subjects. cac.raw4raters Rating Data from 4 Raters and 12 Subjects. cac.raw5obser Scores assigned by 5 observers to 20 experimental units. cont3x3abstractors Distribution of 100 pregnant women by pregnancy type and by abstractor. cont4x4diagnosis Distribution of 223 Psychiatric Patients by Type of of Psychiatric Disorder and Diagnosis Method. distrib.6raters Distribution of 6 psychiatrists by Subject/patient and diagnosis Category. fleiss Dataset describing Fleiss' Benchmarking Scale freqs.data Distribution of 10 subjects by rater (Ben and Gerry) and by category. landis.koch Dataset describing the Landis & Koch Benchmarking Scale x.dist10x5 Dataset of categorical ratings assigned to 10 subjects and presented in the form of a distribution of 4 raters by subject and category x.dist6x5psy Dataset showing how 6 psychiatrists classified 15 patients by their mental health condition. x.raw10x4 Raw categorical ratings assigned to 10 subjects by 4 raters x.raw12x4 This dataset contains raw categorical ratings that 4 raters assigned to 12 subjects. Quitting from overview.Rmd:68-74 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `dplyr::summarise()`: ℹ In argument: `ri = rowSums(across(1:q))`. Caused by error: ! `ri` must be size 1, not 15. ℹ To return more or less than 1 row per group, use `reframe()`. --- Backtrace: ▆ 1. ├─irrCAC::gwet.ac1.dist(distrib.6raters) 2. │ ├─... %>% min() 3. │ ├─dplyr::summarise(as.data.frame(agree.mat), ri = rowSums(across(1:q))) 4. │ └─dplyr:::summarise.data.frame(as.data.frame(agree.mat), ri = rowSums(across(1:q))) 5. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 6. │ └─base::withCallingHandlers(...) 7. └─dplyr:::dplyr_internal_error(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'overview.Rmd' failed with diagnostics: ℹ In argument: `ri = rowSums(across(1:q))`. Caused by error: ! `ri` must be size 1, not 15. ℹ To return more or less than 1 row per group, use `reframe()`. --- failed re-building ‘overview.Rmd’ --- re-building ‘weighting.Rmd’ using rmarkdown Quitting from weighting.Rmd:94-100 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `dplyr::summarise()`: ℹ In argument: `ri = rowSums(across(1:q))`. Caused by error: ! `ri` must be size 1, not 15. ℹ To return more or less than 1 row per group, use `reframe()`. --- Backtrace: ▆ 1. ├─irrCAC::gwet.ac1.dist(distrib.6raters, weights = quadratic.weights(1:q)) 2. │ ├─... %>% min() 3. │ ├─dplyr::summarise(as.data.frame(agree.mat), ri = rowSums(across(1:q))) 4. │ └─dplyr:::summarise.data.frame(as.data.frame(agree.mat), ri = rowSums(across(1:q))) 5. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 6. │ └─base::withCallingHandlers(...) 7. └─dplyr:::dplyr_internal_error(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'weighting.Rmd' failed with diagnostics: ℹ In argument: `ri = rowSums(across(1:q))`. Caused by error: ! `ri` must be size 1, not 15. ℹ To return more or less than 1 row per group, use `reframe()`. --- failed re-building ‘weighting.Rmd’ SUMMARY: processing the following files failed: ‘overview.Rmd’ ‘weighting.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 ERRORs, 1 WARNING, 3 NOTEs