* using log directory 'd:/RCompile/CRANincoming/R-devel/iprior.Rcheck'
* using R version 4.4.0 alpha (2024-03-31 r86238 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'iprior/DESCRIPTION' ... OK
* this is package 'iprior' version '0.7.4'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [13s] NOTE
Maintainer: 'Haziq Jamil <haziq.jamil@gmail.com>'

Uses the superseded package: 'doSNOW'

Found the following (possibly) invalid URLs:
  URL: http://phd.haziqj.ml (moved to https://phd.haziqj.ml/)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: http://phd.haziqj.ml/ (moved to https://phd.haziqj.ml/)
    From: man/iprior-package.Rd
    Status: 301
    Message: Moved Permanently
  URL: http://phd.haziqj.ml/intro/ (moved to https://phd.haziqj.ml/intro/)
    From: man/kernel.Rd
    Status: 301
    Message: Moved Permanently
  URL: http://phd.haziqj.ml/iprior_paper.pdf (moved to https://phd.haziqj.ml/iprior_paper.pdf)
    From: inst/doc/tecator.html
          README.md
    Status: 301
    Message: Moved Permanently
  URL: https://codecov.io/gh/haziqj/iprior (moved to https://app.codecov.io/gh/haziqj/iprior)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://github.com/hadley/devtools (moved to https://github.com/r-lib/devtools)
    From: README.md
    Status: 301
    Message: Moved Permanently
  For content that is 'Moved Permanently', please change http to https,
  add trailing slashes, or replace the old by the new URL.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'iprior' can be installed ... OK
* used C++ compiler: 'g++.exe (GCC) 13.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [17s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  '.A_times_a' '.calc_Hlam' '.checkLevels' '.collapse_param'
  '.convert_se' '.correct_pearson_kernel' '.deal_with_one.lam'
  '.eigen_Hlam' '.eigen_Hlam_nys' '.em_loop_logical'
  '.expand_Hl_and_lambda' '.expand_theta' '.fix_call_default'
  '.fix_call_formula' '.formula_to_xy' '.get_Hl' '.get_Hlam'
  '.get_Htildelam' '.get_Xl.nys' '.get_hyperparam'
  '.get_kernels_from_Hl' '.get_polydegree' '.get_y_and_levels'
  '.iprior_method_checker' '.is.categorical' '.is.ipriorKernel_cv'
  '.kernel_summary_translator' '.kernel_to_param' '.kernel_translator'
  '.kernels_for_summary' '.param_to_kernel' '.param_to_theta'
  '.param_translator' '.reduce_theta' '.terms_to_xy'
  '.theta_to_collapsed_param' '.theta_to_kernel' '.theta_to_param'
  '.update_control'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... OK
  Running 'testthat.R'
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE