* using log directory 'd:/RCompile/CRANincoming/R-devel/intSDM.Rcheck' * using R Under development (unstable) (2023-08-16 r84968 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.2.0 GNU Fortran (GCC) 12.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'intSDM/DESCRIPTION' ... OK * this is package 'intSDM' version '2.0.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Philip Mostert ' Suggests or Enhances not in mainstream repositories: INLA Availability using Additional_repositories specification: INLA yes https://inla.r-inla-download.org/R/testing/ Found the following (possibly) invalid URLs: URL: https://besjournals.onlinelibrary.https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.14091 From: README.md Status: Error Message: Could not resolve host: besjournals.onlinelibrary.https URL: https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.13168 From: README.md Status: 403 Message: Forbidden * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: 'INLA' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'intSDM' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [31s] NOTE Found the following assignments to the global environment: File 'intSDM/R/species_model.R': assign(datasetName, private$dataGBIF[[speciesName]][[datasetName]], envir = globalenv()) * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: 'INLA' * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [11s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [10s] OK Running 'testthat.R' * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... [13s] OK * checking HTML version of manual ... OK * DONE Status: 4 NOTEs