skip_if_not_installed("phylolm") skip_if_not_installed("ape") skip_if_not_installed("MuMIn") skip_if_not_installed("withr") skip_on_cran() withr::with_options( list(na.action = "na.fail"), test_that("phylolm modelinfo", { set.seed(123456) tre <- ape::rcoal(60) taxa <- sort(tre$tip.label) b0 <- 0 b1 <- 1 x <- phylolm::rTrait( n = 1, phy = tre, model = "BM", parameters = list(ancestral.state = 0, sigma2 = 10) ) y <- b0 + b1 * x + phylolm::rTrait( n = 1, phy = tre, model = "lambda", parameters = list( ancestral.state = 0, sigma2 = 1, lambda = 0.5 ) ) dat <- data.frame(trait = y[taxa], pred = x[taxa]) mod <- phylolm::phylolm( trait ~ pred, data = dat, phy = tre, model = "lambda" ) out <- model_info(mod) expect_true(out$is_linear) library(MuMIn) # nolint mod.d <- MuMIn::dredge(mod, rank = "AICc") mod.avg.fit <- MuMIn::model.avg(mod.d, revised.var = TRUE, fit = TRUE) out <- model_info(mod.avg.fit) expect_true(out$is_linear) }) ) unloadNamespace("MuMIn")