* installing *source* package 'inferCSN' ... ** this is package 'inferCSN' version '1.1.7' ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 14.2.0' g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BetaVector.cpp -o BetaVector.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CDL012LogisticSwaps.cpp -o CDL012LogisticSwaps.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CDL012SquaredHingeSwaps.cpp -o CDL012SquaredHingeSwaps.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CDL012Swaps.cpp -o CDL012Swaps.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Grid.cpp -o Grid.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Grid1D.cpp -o Grid1D.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Grid2D.cpp -o Grid2D.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Interface.cpp -o Interface.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Normalize.cpp -o Normalize.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Test_Interface.cpp -o Test_Interface.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c asMatrix.cpp -o asMatrix.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c filter_sort_matrix.cpp -o filter_sort_matrix.o filter_sort_matrix.cpp: In function 'Rcpp::NumericMatrix filter_sort_matrix(Rcpp::NumericMatrix, Rcpp::Nullable >, Rcpp::Nullable >)': filter_sort_matrix.cpp:137:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 137 | for (int i = 0; i < filtered_regulators.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ filter_sort_matrix.cpp:139:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 139 | for (int j = 0; j < filtered_targets.size(); j++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ filter_sort_matrix.cpp:151:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 151 | for (int i = 0; i < filtered_regulators.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ filter_sort_matrix.cpp:155:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 155 | for (int i = 0; i < filtered_targets.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c matrix_to_table.cpp -o matrix_to_table.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c network_evaluation.cpp -o network_evaluation.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c network_format.cpp -o network_format.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c split_indices.cpp -o split_indices.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c table_to_matrix.cpp -o table_to_matrix.o table_to_matrix.cpp: In function 'Rcpp::NumericMatrix table_to_matrix(Rcpp::DataFrame, Rcpp::Nullable >, Rcpp::Nullable >)': table_to_matrix.cpp:100:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 100 | for (int i = 0; i < reg_strings.size(); ++i) | ~~^~~~~~~~~~~~~~~~~~~~ table_to_matrix.cpp:104:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 104 | for (int i = 0; i < tar_strings.size(); ++i) | ~~^~~~~~~~~~~~~~~~~~~~ table_to_matrix.cpp:116:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 116 | for (int i = 0; i < reg_strings.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ table_to_matrix.cpp:120:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 120 | for (int i = 0; i < tar_strings.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.cpp -o utils.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" "-Iinclude" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c weight_sift.cpp -o weight_sift.o g++ -std=gnu++17 -shared -s -static-libgcc -o inferCSN.dll tmp.def BetaVector.o CDL012LogisticSwaps.o CDL012SquaredHingeSwaps.o CDL012Swaps.o Grid.o Grid1D.o Grid2D.o Interface.o Normalize.o RcppExports.o Test_Interface.o asMatrix.o filter_sort_matrix.o matrix_to_table.o network_evaluation.o network_format.o split_indices.o table_to_matrix.o utils.o weight_sift.o -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-inferCSN/00new/inferCSN/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading in method for 'inferCSN' with signature 'object="sparseMatrix"': no definition for class "sparseMatrix" ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (inferCSN)