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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(indicspecies) Loading required package: permute > > test_check("indicspecies") A B sqrtIV p.value Phynod+Helind+Elesp. 1.0000000 0.5714286 0.7559289 0.005 Phynod+Elesp. 0.9000000 0.5714286 0.7171372 0.005 Phynod 0.6666667 0.7142857 0.6900656 0.005 Phynod+Helind 0.7142857 0.6428571 0.6776309 0.005 Helind+Elesp. 0.6428571 0.5714286 0.6060915 0.010 Melcor+Phynod+Elesp. 0.8571429 0.4285714 0.6060915 0.010 Melcor+Helind+Elesp. 0.8571429 0.4285714 0.6060915 0.005 Phynod+Echell+Elesp. 1.0000000 0.3571429 0.5976143 0.010 Echell+Helind+Elesp. 1.0000000 0.3571429 0.5976143 0.010 Melcor+Phynod+Helind 0.7000000 0.5000000 0.5916080 0.015 Phynod+Echell 0.9000000 0.3571429 0.5669467 0.020 Phynod+Echell+Helind 0.8333333 0.3571429 0.5455447 0.025 Echell+Elesp. 0.8333333 0.3571429 0.5455447 0.025 Melcor+Helind 0.5833333 0.5000000 0.5400617 0.040 Melcor+Echell+Elesp. 1.0000000 0.2857143 0.5345225 0.020 Melcor+Elesp. 0.6666667 0.4285714 0.5345225 0.035 Aesind+Phynod+Elesp. 1.0000000 0.2857143 0.5345225 0.015 Aesind+Helind+Elesp. 1.0000000 0.2857143 0.5345225 0.015 Aesind+Elesp. 1.0000000 0.2857143 0.5345225 0.015 Melcor+Phynod 0.5384615 0.5000000 0.5188745 0.065 Echpas 0.5384615 0.5000000 0.5188745 0.075 Cyprot 0.8666667 0.2857143 0.4976134 0.015 Melcor+Phynod+Echell 0.8000000 0.2857143 0.4780914 0.045 Echpas+Phynod 0.8000000 0.2857143 0.4780914 0.040 Echell+Helind 0.6250000 0.3571429 0.4724556 0.090 Melcor+Aesind+Elesp. 1.0000000 0.2142857 0.4629100 0.035 Melcor+Sessp.+Elesp. 1.0000000 0.2142857 0.4629100 0.035 Eupvac+Cyprot 1.0000000 0.2142857 0.4629100 0.055 Eupvac+Cyprot+Sessp. 1.0000000 0.2142857 0.4629100 0.055 Echpas+Cyprot 1.0000000 0.2142857 0.4629100 0.025 Echpas+Cyprot+Sessp. 1.0000000 0.2142857 0.4629100 0.025 Echpas+Phynod+Helind 1.0000000 0.2142857 0.4629100 0.050 Aesind+Echell+Elesp. 1.0000000 0.2142857 0.4629100 0.065 Sessp.+Phynod+Elesp. 1.0000000 0.2142857 0.4629100 0.035 Phynod+Ipoaqu+Elesp. 1.0000000 0.2142857 0.4629100 0.050 Aesind 0.7142857 0.2857143 0.4517540 0.075 Aesind+Phynod 0.7142857 0.2857143 0.4517540 0.075 Phynod+Helind+Orysp. 0.7142857 0.2857143 0.4517540 0.085 Melcor+Echpas 0.5555556 0.3571429 0.4454354 0.115 Phynod+Orysp. 0.6923077 0.2857143 0.4447496 0.075 Melcor+Echell+Helind 0.6666667 0.2857143 0.4364358 0.115 Aesind+Phynod+Helind 0.6666667 0.2857143 0.4364358 0.105 Aesind+Helind 0.6666667 0.2857143 0.4364358 0.105 Cyprot+Sessp. 0.6666667 0.2857143 0.4364358 0.115 Cyprot+Walind 0.8000000 0.2142857 0.4140393 0.070 Phynod+Helind+Ipoaqu 0.8000000 0.2142857 0.4140393 0.075 Phynod+Ipoaqu 0.8000000 0.2142857 0.4140393 0.075 Phynod+Orysp.+Elesp. 0.8000000 0.2142857 0.4140393 0.075 Helind+Ipoaqu+Elesp. 0.8000000 0.2142857 0.4140393 0.085 Pancam+Phynod+Orysp. 0.7500000 0.2142857 0.4008919 0.105 Melcor+Phynod+Ipoaqu 0.7500000 0.2142857 0.4008919 0.085 Melcor+Ipoaqu+Elesp. 0.7500000 0.2142857 0.4008919 0.100 Aesind+Phynod+Echell 0.7500000 0.2142857 0.4008919 0.140 Aesind+Echell 0.7500000 0.2142857 0.4008919 0.140 Aesind+Echell+Helind 0.7500000 0.2142857 0.4008919 0.140 Cyprot+Walind+Sessp. 0.7500000 0.2142857 0.4008919 0.125 Sessp.+Phynod 0.5555556 0.2857143 0.3984095 0.200 Eupvac+Echpas 0.5000000 0.2857143 0.3779645 0.250 Ipoaqu+Elesp. 0.6666667 0.2142857 0.3779645 0.120 Pancam+Helind+Orysp. 0.6000000 0.2142857 0.3585686 0.230 Melcor+Aesind 0.6000000 0.2142857 0.3585686 0.195 Melcor+Aesind+Phynod 0.6000000 0.2142857 0.3585686 0.195 Melcor+Aesind+Helind 0.6000000 0.2142857 0.3585686 0.195 Melcor+Cyprot 0.6000000 0.2142857 0.3585686 0.210 Melcor+Cyprot+Sessp. 0.6000000 0.2142857 0.3585686 0.210 Melcor+Sessp.+Helind 0.6000000 0.2142857 0.3585686 0.170 Melcor+Helind+Ipoaqu 0.6000000 0.2142857 0.3585686 0.185 Echpas+Sessp. 0.6000000 0.2142857 0.3585686 0.230 Sessp.+Phynod+Helind 0.6000000 0.2142857 0.3585686 0.170 Sessp.+Helind+Elesp. 0.6000000 0.2142857 0.3585686 0.290 Helind+Ipoaqu 0.5714286 0.2142857 0.3499271 0.190 Pancam+Phynod+Helind 0.5000000 0.2142857 0.3273268 0.330 Echpas+Helind 0.5000000 0.2142857 0.3273268 0.350 A B sqrtIV p.value Phynod+Helind+Elesp. 1.0000000 0.5714286 0.7559289 0.005 Phynod+Elesp. 0.9000000 0.5714286 0.7171372 0.005 Phynod 0.6666667 0.7142857 0.6900656 0.005 Phynod+Helind 0.7142857 0.6428571 0.6776309 0.005 Helind+Elesp. 0.6428571 0.5714286 0.6060915 0.025 Melcor+Phynod+Elesp. 0.8571429 0.4285714 0.6060915 0.010 Melcor+Helind+Elesp. 0.8571429 0.4285714 0.6060915 0.010 Phynod+Echell+Elesp. 1.0000000 0.3571429 0.5976143 0.010 Echell+Helind+Elesp. 1.0000000 0.3571429 0.5976143 0.010 Melcor+Phynod+Helind 0.7000000 0.5000000 0.5916080 0.015 Phynod+Echell 0.9000000 0.3571429 0.5669467 0.020 Phynod+Echell+Helind 0.8333333 0.3571429 0.5455447 0.040 Echell+Elesp. 0.8333333 0.3571429 0.5455447 0.025 Melcor+Helind 0.5833333 0.5000000 0.5400617 0.075 Melcor+Echell+Elesp. 1.0000000 0.2857143 0.5345225 0.010 Melcor+Elesp. 0.6666667 0.4285714 0.5345225 0.025 Aesind+Phynod+Elesp. 1.0000000 0.2857143 0.5345225 0.030 Aesind+Helind+Elesp. 1.0000000 0.2857143 0.5345225 0.030 Aesind+Elesp. 1.0000000 0.2857143 0.5345225 0.030 Melcor+Phynod 0.5384615 0.5000000 0.5188745 0.105 Echpas 0.5384615 0.5000000 0.5188745 0.080 Cyprot 0.8666667 0.2857143 0.4976134 0.015 Melcor+Phynod+Echell 0.8000000 0.2857143 0.4780914 0.050 Echpas+Phynod 0.8000000 0.2857143 0.4780914 0.040 Echell+Helind 0.6250000 0.3571429 0.4724556 0.105 Melcor+Aesind+Elesp. 1.0000000 0.2142857 0.4629100 0.060 Melcor+Sessp.+Elesp. 1.0000000 0.2142857 0.4629100 0.040 Eupvac+Cyprot 1.0000000 0.2142857 0.4629100 0.035 Eupvac+Cyprot+Sessp. 1.0000000 0.2142857 0.4629100 0.035 Echpas+Cyprot 1.0000000 0.2142857 0.4629100 0.045 Echpas+Cyprot+Sessp. 1.0000000 0.2142857 0.4629100 0.045 Echpas+Phynod+Helind 1.0000000 0.2142857 0.4629100 0.040 Aesind+Echell+Elesp. 1.0000000 0.2142857 0.4629100 0.060 Sessp.+Phynod+Elesp. 1.0000000 0.2142857 0.4629100 0.040 Phynod+Ipoaqu+Elesp. 1.0000000 0.2142857 0.4629100 0.025 Aesind 0.7142857 0.2857143 0.4517540 0.070 Aesind+Phynod 0.7142857 0.2857143 0.4517540 0.070 Phynod+Helind+Orysp. 0.7142857 0.2857143 0.4517540 0.100 Melcor+Echpas 0.5555556 0.3571429 0.4454354 0.110 Phynod+Orysp. 0.6923077 0.2857143 0.4447496 0.055 Melcor+Echell+Helind 0.6666667 0.2857143 0.4364358 0.105 Aesind+Phynod+Helind 0.6666667 0.2857143 0.4364358 0.090 Aesind+Helind 0.6666667 0.2857143 0.4364358 0.090 Cyprot+Sessp. 0.6666667 0.2857143 0.4364358 0.075 Cyprot+Walind 0.8000000 0.2142857 0.4140393 0.075 Phynod+Helind+Ipoaqu 0.8000000 0.2142857 0.4140393 0.110 Phynod+Ipoaqu 0.8000000 0.2142857 0.4140393 0.110 Phynod+Orysp.+Elesp. 0.8000000 0.2142857 0.4140393 0.065 Helind+Ipoaqu+Elesp. 0.8000000 0.2142857 0.4140393 0.080 Pancam+Phynod+Orysp. 0.7500000 0.2142857 0.4008919 0.090 Melcor+Phynod+Ipoaqu 0.7500000 0.2142857 0.4008919 0.130 Melcor+Ipoaqu+Elesp. 0.7500000 0.2142857 0.4008919 0.110 Aesind+Phynod+Echell 0.7500000 0.2142857 0.4008919 0.135 Aesind+Echell 0.7500000 0.2142857 0.4008919 0.135 Aesind+Echell+Helind 0.7500000 0.2142857 0.4008919 0.135 Cyprot+Walind+Sessp. 0.7500000 0.2142857 0.4008919 0.090 Sessp.+Phynod 0.5555556 0.2857143 0.3984095 0.185 Eupvac+Echpas 0.5000000 0.2857143 0.3779645 0.250 Ipoaqu+Elesp. 0.6666667 0.2142857 0.3779645 0.135 Pancam+Helind+Orysp. 0.6000000 0.2142857 0.3585686 0.235 Melcor+Aesind 0.6000000 0.2142857 0.3585686 0.205 Melcor+Aesind+Phynod 0.6000000 0.2142857 0.3585686 0.205 Melcor+Aesind+Helind 0.6000000 0.2142857 0.3585686 0.205 Melcor+Cyprot 0.6000000 0.2142857 0.3585686 0.185 Melcor+Cyprot+Sessp. 0.6000000 0.2142857 0.3585686 0.185 Melcor+Sessp.+Helind 0.6000000 0.2142857 0.3585686 0.200 Melcor+Helind+Ipoaqu 0.6000000 0.2142857 0.3585686 0.250 Echpas+Sessp. 0.6000000 0.2142857 0.3585686 0.205 Sessp.+Phynod+Helind 0.6000000 0.2142857 0.3585686 0.200 Sessp.+Helind+Elesp. 0.6000000 0.2142857 0.3585686 0.295 Helind+Ipoaqu 0.5714286 0.2142857 0.3499271 0.230 Pancam+Phynod+Helind 0.5000000 0.2142857 0.3273268 0.300 Echpas+Helind 0.5000000 0.2142857 0.3273268 0.360 [ FAIL 0 | WARN 0 | SKIP 0 | PASS 26 ] > > proc.time() user system elapsed 9.48 0.37 9.85