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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(indicspecies) Loading required package: permute > > test_check("indicspecies") A B sqrtIV p.value Phynod+Helind+Elesp. 1.0000000 0.5714286 0.7559289 0.005 Phynod+Elesp. 0.9000000 0.5714286 0.7171372 0.005 Phynod 0.6666667 0.7142857 0.6900656 0.005 Phynod+Helind 0.7142857 0.6428571 0.6776309 0.005 Helind+Elesp. 0.6428571 0.5714286 0.6060915 0.020 Melcor+Phynod+Elesp. 0.8571429 0.4285714 0.6060915 0.010 Melcor+Helind+Elesp. 0.8571429 0.4285714 0.6060915 0.010 Phynod+Echell+Elesp. 1.0000000 0.3571429 0.5976143 0.010 Echell+Helind+Elesp. 1.0000000 0.3571429 0.5976143 0.010 Melcor+Phynod+Helind 0.7000000 0.5000000 0.5916080 0.005 Phynod+Echell 0.9000000 0.3571429 0.5669467 0.010 Phynod+Echell+Helind 0.8333333 0.3571429 0.5455447 0.020 Echell+Elesp. 0.8333333 0.3571429 0.5455447 0.015 Melcor+Helind 0.5833333 0.5000000 0.5400617 0.075 Melcor+Echell+Elesp. 1.0000000 0.2857143 0.5345225 0.020 Melcor+Elesp. 0.6666667 0.4285714 0.5345225 0.020 Aesind+Phynod+Elesp. 1.0000000 0.2857143 0.5345225 0.010 Aesind+Helind+Elesp. 1.0000000 0.2857143 0.5345225 0.010 Aesind+Elesp. 1.0000000 0.2857143 0.5345225 0.010 Melcor+Phynod 0.5384615 0.5000000 0.5188745 0.075 Echpas 0.5384615 0.5000000 0.5188745 0.060 Cyprot 0.8666667 0.2857143 0.4976134 0.010 Melcor+Phynod+Echell 0.8000000 0.2857143 0.4780914 0.045 Echpas+Phynod 0.8000000 0.2857143 0.4780914 0.025 Echell+Helind 0.6250000 0.3571429 0.4724556 0.065 Melcor+Aesind+Elesp. 1.0000000 0.2142857 0.4629100 0.020 Melcor+Sessp.+Elesp. 1.0000000 0.2142857 0.4629100 0.035 Eupvac+Cyprot 1.0000000 0.2142857 0.4629100 0.030 Eupvac+Cyprot+Sessp. 1.0000000 0.2142857 0.4629100 0.030 Echpas+Cyprot 1.0000000 0.2142857 0.4629100 0.055 Echpas+Cyprot+Sessp. 1.0000000 0.2142857 0.4629100 0.055 Echpas+Phynod+Helind 1.0000000 0.2142857 0.4629100 0.030 Aesind+Echell+Elesp. 1.0000000 0.2142857 0.4629100 0.045 Sessp.+Phynod+Elesp. 1.0000000 0.2142857 0.4629100 0.035 Phynod+Ipoaqu+Elesp. 1.0000000 0.2142857 0.4629100 0.050 Aesind 0.7142857 0.2857143 0.4517540 0.085 Aesind+Phynod 0.7142857 0.2857143 0.4517540 0.085 Phynod+Helind+Orysp. 0.7142857 0.2857143 0.4517540 0.120 Melcor+Echpas 0.5555556 0.3571429 0.4454354 0.100 Phynod+Orysp. 0.6923077 0.2857143 0.4447496 0.090 Melcor+Echell+Helind 0.6666667 0.2857143 0.4364358 0.075 Aesind+Phynod+Helind 0.6666667 0.2857143 0.4364358 0.115 Aesind+Helind 0.6666667 0.2857143 0.4364358 0.115 Cyprot+Sessp. 0.6666667 0.2857143 0.4364358 0.080 Cyprot+Walind 0.8000000 0.2142857 0.4140393 0.085 Phynod+Helind+Ipoaqu 0.8000000 0.2142857 0.4140393 0.120 Phynod+Ipoaqu 0.8000000 0.2142857 0.4140393 0.120 Phynod+Orysp.+Elesp. 0.8000000 0.2142857 0.4140393 0.115 Helind+Ipoaqu+Elesp. 0.8000000 0.2142857 0.4140393 0.105 Pancam+Phynod+Orysp. 0.7500000 0.2142857 0.4008919 0.115 Melcor+Phynod+Ipoaqu 0.7500000 0.2142857 0.4008919 0.145 Melcor+Ipoaqu+Elesp. 0.7500000 0.2142857 0.4008919 0.135 Aesind+Phynod+Echell 0.7500000 0.2142857 0.4008919 0.110 Aesind+Echell 0.7500000 0.2142857 0.4008919 0.110 Aesind+Echell+Helind 0.7500000 0.2142857 0.4008919 0.110 Cyprot+Walind+Sessp. 0.7500000 0.2142857 0.4008919 0.110 Sessp.+Phynod 0.5555556 0.2857143 0.3984095 0.180 Eupvac+Echpas 0.5000000 0.2857143 0.3779645 0.215 Ipoaqu+Elesp. 0.6666667 0.2142857 0.3779645 0.180 Pancam+Helind+Orysp. 0.6000000 0.2142857 0.3585686 0.190 Melcor+Aesind 0.6000000 0.2142857 0.3585686 0.280 Melcor+Aesind+Phynod 0.6000000 0.2142857 0.3585686 0.280 Melcor+Aesind+Helind 0.6000000 0.2142857 0.3585686 0.280 Melcor+Cyprot 0.6000000 0.2142857 0.3585686 0.210 Melcor+Cyprot+Sessp. 0.6000000 0.2142857 0.3585686 0.210 Melcor+Sessp.+Helind 0.6000000 0.2142857 0.3585686 0.275 Melcor+Helind+Ipoaqu 0.6000000 0.2142857 0.3585686 0.260 Echpas+Sessp. 0.6000000 0.2142857 0.3585686 0.210 Sessp.+Phynod+Helind 0.6000000 0.2142857 0.3585686 0.275 Sessp.+Helind+Elesp. 0.6000000 0.2142857 0.3585686 0.295 Helind+Ipoaqu 0.5714286 0.2142857 0.3499271 0.230 Pancam+Phynod+Helind 0.5000000 0.2142857 0.3273268 0.405 Echpas+Helind 0.5000000 0.2142857 0.3273268 0.300 A B sqrtIV p.value Phynod+Helind+Elesp. 1.0000000 0.5714286 0.7559289 0.005 Phynod+Elesp. 0.9000000 0.5714286 0.7171372 0.005 Phynod 0.6666667 0.7142857 0.6900656 0.005 Phynod+Helind 0.7142857 0.6428571 0.6776309 0.005 Helind+Elesp. 0.6428571 0.5714286 0.6060915 0.035 Melcor+Phynod+Elesp. 0.8571429 0.4285714 0.6060915 0.010 Melcor+Helind+Elesp. 0.8571429 0.4285714 0.6060915 0.015 Phynod+Echell+Elesp. 1.0000000 0.3571429 0.5976143 0.015 Echell+Helind+Elesp. 1.0000000 0.3571429 0.5976143 0.015 Melcor+Phynod+Helind 0.7000000 0.5000000 0.5916080 0.005 Phynod+Echell 0.9000000 0.3571429 0.5669467 0.015 Phynod+Echell+Helind 0.8333333 0.3571429 0.5455447 0.030 Echell+Elesp. 0.8333333 0.3571429 0.5455447 0.015 Melcor+Helind 0.5833333 0.5000000 0.5400617 0.045 Melcor+Echell+Elesp. 1.0000000 0.2857143 0.5345225 0.020 Melcor+Elesp. 0.6666667 0.4285714 0.5345225 0.035 Aesind+Phynod+Elesp. 1.0000000 0.2857143 0.5345225 0.025 Aesind+Helind+Elesp. 1.0000000 0.2857143 0.5345225 0.025 Aesind+Elesp. 1.0000000 0.2857143 0.5345225 0.025 Melcor+Phynod 0.5384615 0.5000000 0.5188745 0.085 Echpas 0.5384615 0.5000000 0.5188745 0.085 Cyprot 0.8666667 0.2857143 0.4976134 0.015 Melcor+Phynod+Echell 0.8000000 0.2857143 0.4780914 0.055 Echpas+Phynod 0.8000000 0.2857143 0.4780914 0.055 Echell+Helind 0.6250000 0.3571429 0.4724556 0.070 Melcor+Aesind+Elesp. 1.0000000 0.2142857 0.4629100 0.050 Melcor+Sessp.+Elesp. 1.0000000 0.2142857 0.4629100 0.050 Eupvac+Cyprot 1.0000000 0.2142857 0.4629100 0.040 Eupvac+Cyprot+Sessp. 1.0000000 0.2142857 0.4629100 0.040 Echpas+Cyprot 1.0000000 0.2142857 0.4629100 0.030 Echpas+Cyprot+Sessp. 1.0000000 0.2142857 0.4629100 0.030 Echpas+Phynod+Helind 1.0000000 0.2142857 0.4629100 0.075 Aesind+Echell+Elesp. 1.0000000 0.2142857 0.4629100 0.070 Sessp.+Phynod+Elesp. 1.0000000 0.2142857 0.4629100 0.050 Phynod+Ipoaqu+Elesp. 1.0000000 0.2142857 0.4629100 0.065 Aesind 0.7142857 0.2857143 0.4517540 0.115 Aesind+Phynod 0.7142857 0.2857143 0.4517540 0.115 Phynod+Helind+Orysp. 0.7142857 0.2857143 0.4517540 0.125 Melcor+Echpas 0.5555556 0.3571429 0.4454354 0.165 Phynod+Orysp. 0.6923077 0.2857143 0.4447496 0.060 Melcor+Echell+Helind 0.6666667 0.2857143 0.4364358 0.105 Aesind+Phynod+Helind 0.6666667 0.2857143 0.4364358 0.150 Aesind+Helind 0.6666667 0.2857143 0.4364358 0.150 Cyprot+Sessp. 0.6666667 0.2857143 0.4364358 0.075 Cyprot+Walind 0.8000000 0.2142857 0.4140393 0.100 Phynod+Helind+Ipoaqu 0.8000000 0.2142857 0.4140393 0.120 Phynod+Ipoaqu 0.8000000 0.2142857 0.4140393 0.120 Phynod+Orysp.+Elesp. 0.8000000 0.2142857 0.4140393 0.105 Helind+Ipoaqu+Elesp. 0.8000000 0.2142857 0.4140393 0.130 Pancam+Phynod+Orysp. 0.7500000 0.2142857 0.4008919 0.110 Melcor+Phynod+Ipoaqu 0.7500000 0.2142857 0.4008919 0.155 Melcor+Ipoaqu+Elesp. 0.7500000 0.2142857 0.4008919 0.165 Aesind+Phynod+Echell 0.7500000 0.2142857 0.4008919 0.150 Aesind+Echell 0.7500000 0.2142857 0.4008919 0.150 Aesind+Echell+Helind 0.7500000 0.2142857 0.4008919 0.150 Cyprot+Walind+Sessp. 0.7500000 0.2142857 0.4008919 0.120 Sessp.+Phynod 0.5555556 0.2857143 0.3984095 0.160 Eupvac+Echpas 0.5000000 0.2857143 0.3779645 0.295 Ipoaqu+Elesp. 0.6666667 0.2142857 0.3779645 0.200 Pancam+Helind+Orysp. 0.6000000 0.2142857 0.3585686 0.255 Melcor+Aesind 0.6000000 0.2142857 0.3585686 0.265 Melcor+Aesind+Phynod 0.6000000 0.2142857 0.3585686 0.265 Melcor+Aesind+Helind 0.6000000 0.2142857 0.3585686 0.265 Melcor+Cyprot 0.6000000 0.2142857 0.3585686 0.200 Melcor+Cyprot+Sessp. 0.6000000 0.2142857 0.3585686 0.200 Melcor+Sessp.+Helind 0.6000000 0.2142857 0.3585686 0.240 Melcor+Helind+Ipoaqu 0.6000000 0.2142857 0.3585686 0.270 Echpas+Sessp. 0.6000000 0.2142857 0.3585686 0.215 Sessp.+Phynod+Helind 0.6000000 0.2142857 0.3585686 0.240 Sessp.+Helind+Elesp. 0.6000000 0.2142857 0.3585686 0.275 Helind+Ipoaqu 0.5714286 0.2142857 0.3499271 0.290 Pancam+Phynod+Helind 0.5000000 0.2142857 0.3273268 0.395 Echpas+Helind 0.5000000 0.2142857 0.3273268 0.335 [ FAIL 0 | WARN 0 | SKIP 0 | PASS 26 ] > > proc.time() user system elapsed 10.06 0.46 10.53