* using log directory 'd:/RCompile/CRANincoming/R-devel/inDAGO.Rcheck' * using R Under development (unstable) (2025-06-13 r88311 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'inDAGO/DESCRIPTION' ... OK * this is package 'inDAGO' version '1.0.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Carmine Fruggiero ' New submission Possibly misspelled words in DESCRIPTION: inDAGO (8:14, 16:24, 19:10) pre (20:14) summarization (21:27) Authors@R field should be a call to person(), or combine such calls. The Title field should be in title case. Current version is: 'A Shiny app for dual and bulk RNA-sequencing analysis' In title case that is: 'A Shiny App for Dual and Bulk RNA-Sequencing Analysis' The Description field should not start with the package name, 'This package' or similar. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'inDAGO' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... NOTE Maintainer field differs from that derived from Authors@R Maintainer: 'Carmine Fruggiero ' Authors@R: 'Gaetano Aufiero ' * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [17s] OK * checking whether the package can be loaded with stated dependencies ... [17s] OK * checking whether the package can be unloaded cleanly ... [17s] OK * checking whether the namespace can be loaded with stated dependencies ... [16s] OK * checking whether the namespace can be unloaded cleanly ... [17s] OK * checking loading without being on the library search path ... [17s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [102s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... NONE * checking for unstated dependencies in 'tests' ... OK * checking tests ... [28s] OK Running 'testthat.R' [28s] * checking PDF version of manual ... [18s] WARNING LaTeX errors when creating PDF version. This typically indicates Rd problems. LaTeX errors found: ! LaTeX Error: Unicode character ⁶ (U+2076) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character ₂ (U+2082) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character ≤ (U+2264) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character ≥ (U+2265) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character ₂ (U+2082) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character ≤ (U+2264) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character ≥ (U+2265) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character ≤ (U+2264) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character ≥ (U+2265) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character ₂ (U+2082) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character ₁ (U+2081) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character ₀ (U+2080) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character ₂ (U+2082) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. * checking PDF version of manual without index ... ERROR * checking HTML version of manual ... NOTE Found the following HTML validation problems: Filtering.html:155:65 (Filtering.Rd:85): Error: is not recognized! Filtering.html:155:65 (Filtering.Rd:85): Warning: discarding unexpected Filtering.html:155:118 (Filtering.Rd:85): Error: is not recognized! Filtering.html:155:118 (Filtering.Rd:85): Warning: discarding unexpected * DONE Status: 1 ERROR, 1 WARNING, 3 NOTEs