library(testthat) library(stringr) test_that("HLA_validate correctly validates and cleans HLA alleles", { expect_equal(HLA_validate("HLA-A2"), "HLA-A2") expect_equal(HLA_validate("A*02:01:01:01N"), "A*02:01:01:01N") expect_equal(HLA_validate("A*02:01:01N"), "A*02:01:01N") expect_equal(HLA_validate("HLA-DRB1*02:03novel"), "HLA-DRB1*02:03") expect_equal(HLA_validate("HLA-DQB1*03:01v"), "HLA-DQB1*03:01") expect_equal(HLA_validate("HLA-DRB1*02:03P"), "HLA-DRB1*02:03P") expect_equal(HLA_validate("HLA-DPB1*04:01:01G"), "HLA-DPB1*04:01:01G") expect_equal(HLA_validate("2"), "2") expect_equal(HLA_validate(2), "2") expect_equal(HLA_validate("B27"), "B27") expect_equal(HLA_validate("A*010101"), "A*010101") expect_equal(HLA_validate("-"), NA_character_) expect_equal(HLA_validate("blank"), NA_character_) })