* using log directory ‘/srv/hornik/tmp/CRAN/imageRy.Rcheck’
* using R Under development (unstable) (2024-05-06 r86526)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.4 (1)
    Debian flang-new version 18.1.4 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘imageRy/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘imageRy’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘The package maintainer <ducciorocchini@gmail.com>’

New submission

DESCRIPTION fields with placeholder content:
  Maintainer: The package maintainer <ducciorocchini@gmail.com>

Size of tarball: 70594336 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘imageRy’ can be installed ... [12s/12s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard files/directories found at top level:
  ‘data_description.md’ ‘imageRy.html’ ‘imageRy_rapid_manual.html’
  ‘vignette.html’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s/4s] OK
* checking whether the package can be loaded with stated dependencies ... [4s/4s] OK
* checking whether the package can be unloaded cleanly ... [4s/4s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK
* checking whether the namespace can be unloaded cleanly ... [4s/4s] OK
* checking loading without being on the library search path ... [4s/4s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [16s/16s] NOTE
im.ggplot: no visible binding for global variable ‘x’
im.ggplot: no visible binding for global variable ‘y’
Undefined global functions or variables:
  x y
* checking Rd files ... [0s/0s] NOTE
prepare_Rd: im.classify.Rd:37-38: Dropping empty section \note
prepare_Rd: im.import.Rd:23-24: Dropping empty section \references
prepare_Rd: im.pca.Rd:20-21: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘im.refresh’ ‘test1’ ‘test2’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from Rd file 'im.classify.Rd':
im.classify
  Code: function(input_image, num_clusters = 3, seed = NULL, do_plot =
                 TRUE, custom_colors = NULL, num_colors = 100)
  Docs: function(x, num_clusters = 3, seed = NULL, do_plot = TRUE,
                 use_viridis = TRUE, colors = c("yellow", "black",
                 "red"), num_colors = 100)
  Argument names in code not in docs:
    input_image custom_colors
  Argument names in docs not in code:
    x use_viridis colors
  Mismatches in argument names:
    Position: 1 Code: input_image Docs: x
    Position: 5 Code: custom_colors Docs: use_viridis
    Position: 6 Code: num_colors Docs: colors

Codoc mismatches from Rd file 'im.ggplot.Rd':
im.ggplot
  Code: function(input_raster, layerfill = 1)
  Docs: function(x, layerfill = 1)
  Argument names in code not in docs:
    input_raster
  Argument names in docs not in code:
    x
  Mismatches in argument names:
    Position: 1 Code: input_raster Docs: x

Codoc mismatches from Rd file 'im.plotRGB.Rd':
im.plotRGB
  Code: function(x, r, g, b)
  Docs: function(x, r = 1, g = 2, b = 3)
  Mismatches in argument default values:
    Name: 'r' Code:  Docs: 1
    Name: 'g' Code:  Docs: 2
    Name: 'b' Code:  Docs: 3

* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [4s/4s] ERROR
Running examples in ‘imageRy-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: im.classify
> ### Title: Image pixels classification
> ### Aliases: im.classify
> 
> ### ** Examples
> 
> GL15 <- im.import("greenland.2015.tif")
> im.classify(GL15, num_clusters = 3, seed = NULL,
+             do_plot = TRUE, use_viridis = TRUE,
+             colors = c('yellow','black','red'),
+             num_colors = 100)
Error in im.classify(GL15, num_clusters = 3, seed = NULL, do_plot = TRUE,  : 
  unused arguments (use_viridis = TRUE, colors = c("yellow", "black", "red"))
Execution halted
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 2 WARNINGs, 4 NOTEs