Package: pkggraph Check: whether package can be installed New result: WARNING Found the following significant warnings: Warning: replacing previous import ‘checkmate::check_data_frame’ by ‘rlang::check_data_frame’ when loading ‘pkggraph’ Warning: replacing previous import ‘checkmate::check_string’ by ‘rlang::check_string’ when loading ‘pkggraph’ Package: rgph Check: examples New result: ERROR Running examples in ‘rgph-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: reeb_graph > ### Title: An S3 class and constructors for Reeb graphs > ### Aliases: reeb_graph print.reeb_graph format.reeb_graph read_reeb_graph > > ### ** Examples > > x <- reeb_graph( + values = c(a = 0, b = .4, c = .6, d = 1), + edgelist = rbind( c(1,2), c(1,3), c(2,4), c(3,4)) + ) > print(x) Reeb graph with 4 vertices and 4 edges on [0,1]: 1[a] (0.0) -- 2[b] (0.4) 1[a] (0.0) -- 3[c] (0.6) 2[b] (0.4) -- 4[d] (1.0) 3[c] (0.6) -- 4[d] (1.0) > > t10 <- system.file("extdata", "10_tree_iterations.txt", package = "rgph") > ( y <- read_reeb_graph(t10) ) Reeb graph with 41 vertices and 40 edges on [0,152.2565]: 1 ( 0.000000) -- 2 ( 1.386294) 1 ( 0.000000) -- 14 (36.946803) 2 ( 1.386294) -- 3 ( 3.295837) 3 ( 3.295837) -- 4 ( 5.545177) 3 ( 3.295837) -- 5 ( 8.047190) 4 ( 5.545177) -- 6 (10.750557) 6 (10.750557) -- 7 (13.621371) 7 (13.621371) -- 9 (19.775021) 7 (13.621371) -- 8 (16.635532) 8 (16.635532) -- 18 (52.026692) 9 (19.775021) -- 10 (23.025851) 10 (23.025851) -- 11 (26.376848) ... > > reeb_graph_pairs(x, method = "multi_pass") Error in .jnew(pairing_java_object) : java.lang.UnsupportedClassVersionError: usf/saav/cmd/MergePairingCLI has been compiled by a more recent version of the Java Runtime (class file version 69.0), this version of the Java Runtime only recognizes class file versions up to 65.0 Calls: reeb_graph_pairs -> reeb_graph_pairs.reeb_graph -> .jnew Execution halted Package: rgph Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘benchmark.Rmd’ using rmarkdown Quitting from benchmark.Rmd:32-38 [example calculation] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `.jnew()`: ! java.lang.UnsupportedClassVersionError: usf/saav/cmd/MergePairingCLI has been compiled by a more recent version of the Java Runtime (class file version 69.0), this version of the Java Runtime only recognizes class file versions up to 65.0 --- Backtrace: ▆ 1. ├─rgph::reeb_graph_pairs(ex_reeb, method = "multi_pass") 2. └─rgph:::reeb_graph_pairs.reeb_graph(ex_reeb, method = "multi_pass") 3. └─rJava::.jnew(pairing_java_object) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'benchmark.Rmd' failed with diagnostics: java.lang.UnsupportedClassVersionError: usf/saav/cmd/MergePairingCLI has been compiled by a more recent version of the Java Runtime (class file version 69.0), this version of the Java Runtime only recognizes class file versions up to 65.0 --- failed re-building ‘benchmark.Rmd’ SUMMARY: processing the following file failed: ‘benchmark.Rmd’ Error: Vignette re-building failed. Execution halted Package: rgph Check: tests New result: ERROR Running ‘tinytest.R’ [2s/2s] Running the tests in ‘tests/tinytest.R’ failed. Complete output: > if (requireNamespace("tinytest", quietly = TRUE)) { + tinytest::test_package("rgph") + } Loading required package: rJava Loading required package: phutil test-as-reeb-graph.R.......... 2 tests OK test-as-reeb-graph.R.......... 4 tests OK test-as-reeb-graph.R.......... 6 tests OK test-as-reeb-graph.R.......... 9 tests OK test-as-reeb-graph.R.......... 12 tests OK test-as-reeb-graph.R.......... 12 tests OK test-as-reeb-graph.R.......... 12 tests OK test-as-reeb-graph.R.......... 12 tests OK test-as-reeb-graph.R.......... 16 tests OK test-as-reeb-graph.R.......... 20 tests OK 0.9s Error in .jnew(pairing_java_object) : java.lang.UnsupportedClassVersionError: usf/saav/cmd/PPPairingCLI has been compiled by a more recent version of the Java Runtime (class file version 69.0), this version of the Java Runtime only recognizes class file versions up to 65.0 Calls: ... reeb_graph_pairs -> reeb_graph_pairs.reeb_graph -> .jnew Execution halted Package: stm Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘stmVignette.Rnw’ using Sweave stm v1.3.8 successfully loaded. See ?stm for help. Papers, resources, and other materials at structuraltopicmodel.com Warning in load(url("https://github.com/bstewart/stm/blob/gh-pages/files/VignetteObjects.RData?raw=true")) : URL 'https://github.com/bstewart/stm/blob/gh-pages/files/VignetteObjects.RData?raw=true': status was 'Failure when receiving data from the peer' Error: processing vignette 'stmVignette.Rnw' failed with diagnostics: chunk 7 Error in load(url("https://github.com/bstewart/stm/blob/gh-pages/files/VignetteObjects.RData?raw=true")) : cannot open the connection to 'https://github.com/bstewart/stm/blob/gh-pages/files/VignetteObjects.RData?raw=true' --- failed re-building 'stmVignette.Rnw' SUMMARY: processing the following file failed: 'stmVignette.Rnw' Error: Vignette re-building failed. Execution halted