test_that("Kamada-Kawai layout generator works", { skip_on_cran() set.seed(42) center_layout <- function(layout) { t(t(layout) - colMeans(layout)) } get_radii <- function(layout) { apply(layout, 1, function(x) sqrt(sum(x**2))) } sort_by_angles <- function(layout) { angles <- apply(layout, 1, function(x) atan2(x[2], x[1])) layout[order(angles), ] } looks_circular <- function(layout, check_dists = TRUE, eps = 1e-5) { layout <- center_layout(layout) radii <- get_radii(layout) norm_radii <- (radii - mean(radii)) / mean(radii) layout <- sort_by_angles(layout) if (!all(abs(norm_radii) < eps)) { return(FALSE) } if (!check_dists) { return(TRUE) } dists <- apply(layout[-nrow(layout), ] - layout[-1, ], 1, function(x) sqrt(sum(x**2))) norm_dists <- (dists - mean(dists)) / mean(dists) all(abs(norm_dists) < eps) } g <- make_ring(10) l <- layout_with_kk(g, maxiter = 50, coords = layout_in_circle(g)) expect_true(looks_circular(l)) g <- make_star(12) l <- layout_with_kk(g, maxiter = 500, coords = layout_in_circle(g)) expect_true(looks_circular(l[-1,])) g <- make_ring(10) E(g)$weight <- rep(1:2, length.out = ecount(g)) l <- layout_with_kk(g, maxiter = 500, coords = layout_in_circle(g)) expect_true(looks_circular(l, check_dists = FALSE)) g <- make_star(30) l <- layout_with_kk(g, maxiter = 5000, dim = 3) expect_true(looks_circular(l[-1,], check_dists = FALSE, eps = 1e-2)) })