* using log directory 'd:/RCompile/CRANincoming/R-devel/idem.Rcheck'
* using R Under development (unstable) (2023-07-06 r84647 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.2.0
    GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'idem/DESCRIPTION' ... OK
* this is package 'idem' version '5.2'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Chenguang Wang <cwang68@jhmi.edu>'

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  Missingness (3:9)
  al (17:53, 18:17)
  et (17:50, 18:14)

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2023-05-31 as issues were not corrected
    in time.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'idem' can be installed ... OK
* used C compiler: 'gcc.exe (GCC) 12.2.0'
* used C++ compiler: 'g++.exe (GCC) 12.2.0'
* checking C++ specification ... OK
  Not all R platforms support C++17
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Mismatches for apparent methods not registered:
plot:
  function(x, ...)
plot.mispattern:
  function(data.all, lst.var, cols, order.by, fname, ...)

plot:
  function(x, ...)
plot.composite:
  function(imp.rst, delta, fname, buffer, at.surv, at.z, p.death,
           seg.lab, cols, ltys, main, ...)

plot:
  function(x, ...)
plot.contour:
  function(cur.data, trt.len, col.var, con.v, nlevels, ...)

plot:
  function(x, ...)
plot.survivor:
  function(data.all, lst.var, fname, ...)

plot:
  function(x, ...)
plot.surv:
  function(data.all, lst.var, cols, fname, ...)

plot:
  function(x, ...)
plot.imputed:
  function(imp.rst, fname, deltas, endp, adj, cols, ltys, xlim, ylim,
           mfrow, to.plot, ...)

c:
  function(...)
c.rankij:
  function(val.i, val.j, duration, cut.surv, cut.z)

c:
  function(...)
c.kdpdf:
  function(err, res, h, log.v)

c:
  function(...)
c.bubblesort:
  function(val.trt, duration, cut.surv, cut.z)

c:
  function(...)
c.rankall:
  function(val.trt1, val.trt2, duration, cut.surv, cut.z)
See section 'Registering S3 methods' in the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [26s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [10s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [22s] OK
* checking PDF version of manual ... [28s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 NOTEs