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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(iRfcb) > > test_check("iRfcb") Starting 2 test processes. > test-ifcb_create_manifest.R: MANIFEST.txt has been created at D:\temp\2026_02_27_19_00_17_21679\Rtmp63hBcs/mock_dir/test_data/MANIFEST.txt > test-ifcb_create_manifest.R: MANIFEST.txt has been created at D:\temp\2026_02_27_19_00_17_21679\Rtmp63hBcs/mock_dir/test_data/MANIFEST.txt > test-ifcb_create_manifest.R: MANIFEST.txt has been created at D:\temp\2026_02_27_19_00_17_21679\Rtmp63hBcs/mock_dir/test_data/MANIFEST.txt > test-ifcb_download_whoi_plankton.R: Download and extraction complete. > test-ifcb_extract_biovolumes.R: Reading feature files... > test-ifcb_read_features.R: | | | 0% | |=================================== | 50% > test-ifcb_read_features.R: | |======================================================================| 100% > test-ifcb_read_features.R: > test-ifcb_read_hdr_data.R: | | | 0% | |======================================================================| 100% > test-ifcb_read_features.R: | | | 0% | |=================================== | 50% > test-ifcb_read_features.R: | |======================================================================| 100% > test-ifcb_read_hdr_data.R: > test-ifcb_read_features.R: > test-ifcb_read_hdr_data.R: Processing completed. > test-ifcb_read_hdr_data.R: Found 1 .hdr files. > test-ifcb_read_hdr_data.R: | | | 0% | |======================================================================| 100% > test-ifcb_read_features.R: | | | 0% | |======================================================================| 100% > test-ifcb_read_hdr_data.R: > test-ifcb_read_features.R: > test-ifcb_read_features.R: | | | 0% | |=================================== | 50% > test-ifcb_read_features.R: | |======================================================================| 100% > test-ifcb_read_features.R: > test-ifcb_read_features.R: | | | 0% | |=================================== | 50% > test-ifcb_read_features.R: | |======================================================================| 100% > test-ifcb_read_features.R: > test-ifcb_zip_images_by_class.R: [==================================================] 100% > test-ifcb_zip_matlab.R: Listing all files... > test-ifcb_zip_matlab.R: Copying manual files... > test-ifcb_zip_matlab.R: Copying feature files... > test-ifcb_zip_matlab.R: [==================================================] 100% > test-ifcb_zip_matlab.R: [==================================================] 100% > test-ifcb_zip_matlab.R: > test-ifcb_zip_matlab.R: Copying data files... > test-ifcb_zip_matlab.R: [==================================================] 100% > test-ifcb_zip_matlab.R: > test-ifcb_zip_matlab.R: Copying class2use file... > test-ifcb_zip_matlab.R: Creating README file... > test-ifcb_zip_matlab.R: Creating MANIFEST.txt... > test-ifcb_zip_matlab.R: Creating zip archive... > test-ifcb_zip_matlab.R: Zip archive created successfully: D:/temp/2026_02_27_19_00_17_21679/Rtmp6n4gjf/ifcb_zip_matlab/output/test_output.zip > test-ifcb_zip_matlab.R: The zip file is already smaller than the specified max size (500 MB). > test-ifcb_zip_pngs.R: Creating README file... > test-ifcb_zip_pngs.R: [==================================================] 100% > test-ifcb_zip_pngs.R: Creating MANIFEST.txt... > test-ifcb_zip_pngs.R: Creating zip archive... > test-ifcb_zip_pngs.R: Zip archive created successfully: D:/temp/2026_02_27_19_00_17_21679/Rtmp6n4gjf/ifcb_zip_pngs/test_output.zip > test-ifcb_zip_pngs.R: Creating README file... > test-ifcb_zip_pngs.R: [==================================================] 100% > test-ifcb_zip_pngs.R: Creating MANIFEST.txt... > test-ifcb_zip_pngs.R: Creating zip archive... > test-ifcb_zip_pngs.R: Zip archive created successfully: D:/temp/2026_02_27_19_00_17_21679/Rtmp6n4gjf/ifcb_zip_pngs/test_output.zip > test-ifcb_zip_pngs.R: D:\temp\2026_02_27_19_00_17_21679\Rtmp6n4gjf/ifcb_zip_pngs/test_output.zip is larger than 1e-07 MB. Splitting the zip file into smaller parts... > test-ifcb_zip_pngs.R: Successfully created 1 smaller zip files: > test-ifcb_zip_pngs.R: D:/temp/2026_02_27_19_00_17_21679/Rtmp6n4gjf/ifcb_zip_pngs/test_output_part_1.zip > test-ifcb_zip_pngs.R: Creating README file... > test-ifcb_zip_pngs.R: [==================================================] 100% > test-ifcb_zip_pngs.R: Creating MANIFEST.txt... > test-ifcb_zip_pngs.R: Creating zip archive... > test-ifcb_zip_pngs.R: Zip archive created successfully: D:/temp/2026_02_27_19_00_17_21679/Rtmp6n4gjf/ifcb_zip_pngs/test_output.zip [ FAIL 0 | WARN 0 | SKIP 66 | PASS 357 ] ══ Skipped tests (66) ══════════════════════════════════════════════════════════ • On CRAN (39): 'test-ifcb_classify_models.R:4:3', 'test-ifcb_classify_images.R:9:3', 'test-ifcb_classify_images.R:126:3', 'test-ifcb_classify_images.R:161:3', 'test-ifcb_classify_sample.R:110:3', 'test-ifcb_download_dashboard_data.R:4:3', 'test-ifcb_download_dashboard_metadata.R:3:3', 'test-ifcb_download_test_data.R:3:3', 'test-ifcb_extract_annotated_images.R:2:3', 'test-ifcb_extract_annotated_images.R:61:3', 'test-ifcb_extract_biovolumes.R:18:3', 'test-ifcb_extract_biovolumes.R:112:3', 'test-ifcb_extract_biovolumes.R:130:3', 'test-ifcb_extract_biovolumes.R:165:3', 'test-ifcb_extract_biovolumes.R:202:3', 'test-ifcb_extract_pngs.R:2:3', 'test-ifcb_extract_classified_images.R:2:3', 'test-ifcb_extract_classified_images.R:67:3', 'test-ifcb_extract_classified_images.R:103:3', 'test-ifcb_extract_classified_images.R:138:3', 'test-ifcb_extract_classified_images.R:172:3', 'test-ifcb_extract_classified_images.R:211:3', 'test-ifcb_get_runtime.R:59:3', 'test-ifcb_is_diatom.R:3:3', 'test-ifcb_is_diatom.R:22:3', 'test-ifcb_is_diatom.R:50:3', 'test-ifcb_is_near_land.R:3:3', 'test-ifcb_is_near_land.R:25:3', 'test-ifcb_is_near_land.R:46:3', 'test-ifcb_list_dashboard_bins.R:3:3', 'test-ifcb_match_taxa_names.R:3:3', 'test-ifcb_match_taxa_names.R:22:3', 'test-ifcb_py_install.R:3:3', 'test-ifcb_py_install.R:35:3', 'test-ifcb_summarize_biovolumes.R:13:3', 'test-ifcb_summarize_biovolumes.R:65:3', 'test-ifcb_save_classification.R:292:3', 'test-ifcb_save_classification.R:426:3', 'test-ifcb_which_basin.R:37:3' • scipy not available for testing (CRAN) (27): 'test-ifcb_adjust_classes.R:3:3', 'test-ifcb_annotate_batch.R:4:3', 'test-ifcb_annotate_batch.R:66:3', 'test-ifcb_annotate_samples.R:3:3', 'test-ifcb_annotate_samples.R:50:3', 'test-ifcb_annotate_samples.R:108:3', 'test-ifcb_correct_annotation.R:3:3', 'test-ifcb_correct_annotation.R:67:3', 'test-ifcb_correct_annotation.R:122:3', 'test-ifcb_correct_annotation.R:181:3', 'test-ifcb_create_class2use.R:3:3', 'test-ifcb_create_empty_manual_file.R:3:3', 'test-ifcb_create_empty_manual_file.R:20:3', 'test-ifcb_create_manual_file.R:5:3', 'test-ifcb_create_manual_file.R:27:3', 'test-ifcb_get_mat_names.R:28:3', 'test-ifcb_merge_manual.R:3:3', 'test-ifcb_merge_manual.R:68:3', 'test-ifcb_prepare_whoi_plankton.R:3:3', 'test-ifcb_prepare_whoi_plankton.R:124:3', 'test-ifcb_psd.R:3:3', 'test-ifcb_replace_mat_values.R:3:3', 'test-ifcb_replace_mat_values.R:46:3', 'test-ifcb_replace_mat_values.R:59:3', 'test-ifcb_replace_mat_values.R:82:3', 'test-ifcb_replace_mat_values.R:108:3', 'test-ifcb_read_summary.R:40:3' [ FAIL 0 | WARN 0 | SKIP 66 | PASS 357 ] > > proc.time() user system elapsed 9.79 1.14 38.23