* using log directory 'd:/RCompile/CRANincoming/R-devel/iNEXT.3D.Rcheck'
* using R Under development (unstable) (2024-02-05 r85863 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'iNEXT.3D/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'iNEXT.3D' version '1.0.0'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Anne Chao <chao@stat.nthu.edu.tw>'

New submission

Possibly misspelled words in DESCRIPTION:
  Chao (22:45)
  phylogenetic (19:45)

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field should not start with the package name,
  'This package' or similar.

Size of tarball: 9270410 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'iNEXT.3D' can be installed ... WARNING
Found the following significant warnings:
  Warning: replacing previous import 'ape::where' by 'dplyr::where' when loading 'iNEXT.3D'
  Warning: replacing previous import 'ape::keep.tip' by 'tidytree::keep.tip' when loading 'iNEXT.3D'
  Warning: replacing previous import 'ape::drop.tip' by 'tidytree::drop.tip' when loading 'iNEXT.3D'
See 'd:/RCompile/CRANincoming/R-devel/iNEXT.3D.Rcheck/00install.out' for details.
* used C++ compiler: 'g++.exe (GCC) 12.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Author field differs from that derived from Authors@R
  Author:    'Anne Chao [aut, cre] and KaiHsiang Hu [ctb]'
  Authors@R: 'Anne Chao [aut, cre], KaiHsiang Hu [ctb]'

* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [19s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... WARNING
  'gs+qpdf' made some significant size reductions:
     compacted 'Introduction.pdf' from 5.6Mb to 1.5Mb
  consider running tools::compactPDF(gs_quality = "ebook") on these files,
  or build the source package with --compact-vignettes=both
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [139s] OK
  Running 'testthat.R' [139s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [14s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 WARNINGs, 2 NOTEs