downloading reverse dependencies ... downloading ir_0.4.1.tar.gz ... ok downloading OpenSpecy_1.5.3.tar.gz ... ok downloading photobiologyInOut_0.4.32.tar.gz ... ok installing dependencies ‘baseline’, ‘ChemoSpec’, ‘colorSpec’, ‘ggspectra’, ‘hyperSpec’, ‘mmand’, ‘pavo’, ‘photobiologyWavebands’, ‘prospectr’, ‘quantities’ also installing the dependencies ‘ChemoSpecUtils’, ‘readJDX’, ‘errors’, ‘lightr’ begin installing package ‘ChemoSpecUtils’ begin installing package ‘readJDX’ begin installing package ‘errors’ begin installing package ‘lightr’ begin installing package ‘hyperSpec’ begin installing package ‘baseline’ begin installing package ‘prospectr’ begin installing package ‘mmand’ begin installing package ‘colorSpec’ begin installing package ‘photobiologyWavebands’ * installing *source* package ‘errors’ ... ** this is package ‘errors’ version ‘0.4.4’ ** package ‘errors’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (errors) begin installing package ‘quantities’ * installing *source* package ‘colorSpec’ ... ** this is package ‘colorSpec’ version ‘1.8-0’ ** package ‘colorSpec’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (colorSpec) * installing *source* package ‘readJDX’ ... ** this is package ‘readJDX’ version ‘0.6.4’ ** package ‘readJDX’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (readJDX) * installing *source* package ‘lightr’ ... ** this is package ‘lightr’ version ‘1.9.0’ ** package ‘lightr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lightr) begin installing package ‘pavo’ * installing *source* package ‘photobiologyWavebands’ ... ** this is package ‘photobiologyWavebands’ version ‘0.5.4’ ** package ‘photobiologyWavebands’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (photobiologyWavebands) begin installing package ‘ggspectra’ * installing *source* package ‘baseline’ ... ** this is package ‘baseline’ version ‘1.3-7’ ** package ‘baseline’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmLee1T/R.INSTALL3520251354b758/baseline/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c baselineMethods.c -o baselineMethods.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c s2band.f -o s2band.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o baseline.so baselineMethods.o s2band.o -L/home/hornik/tmp/R/lib -lRblas -llapack -lgfortran -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmLee1T/R.INSTALL3520251354b758/baseline/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-baseline/00new/baseline/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘getCall’ in package ‘baseline’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (baseline) * installing *source* package ‘ChemoSpecUtils’ ... ** this is package ‘ChemoSpecUtils’ version ‘1.0.5’ ** package ‘ChemoSpecUtils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ChemoSpecUtils) begin installing package ‘ChemoSpec’ * installing *source* package ‘quantities’ ... ** this is package ‘quantities’ version ‘0.2.3’ ** package ‘quantities’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdfzbhV/R.INSTALL3523673aaa58e8/quantities/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c parse.cpp -o parse.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o quantities.so RcppExports.o parse.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdfzbhV/R.INSTALL3523673aaa58e8/quantities/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-quantities/00new/quantities/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (quantities) * installing *source* package ‘hyperSpec’ ... ** this is package ‘hyperSpec’ version ‘0.100.3’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘apply’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘cov’ from package ‘stats’ in package ‘hyperSpec’ Creating a generic function for ‘ncol’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘nrow’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘rownames’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘rownames<-’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘colnames’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘colnames<-’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘sample’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘sweep’ from package ‘base’ in package ‘hyperSpec’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hyperSpec) * installing *source* package ‘pavo’ ... ** this is package ‘pavo’ version ‘2.9.0’ ** package ‘pavo’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pavo) * installing *source* package ‘ChemoSpec’ ... ** this is package ‘ChemoSpec’ version ‘6.3.1’ ** package ‘ChemoSpec’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ChemoSpec) * installing *source* package ‘ggspectra’ ... ** this is package ‘ggspectra’ version ‘0.3.17’ ** package ‘ggspectra’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggspectra) * installing *source* package ‘prospectr’ ... ** this is package ‘prospectr’ version ‘0.2.8’ ** package ‘prospectr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpM8EEib/R.INSTALL3520219078d9b/prospectr/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c processing_helpers.cpp -o processing_helpers.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o prospectr.so RcppExports.o processing_helpers.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpM8EEib/R.INSTALL3520219078d9b/prospectr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-prospectr/00new/prospectr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prospectr) * installing *source* package ‘mmand’ ... ** this is package ‘mmand’ version ‘1.6.3’ ** package ‘mmand’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++-15 -std=gnu++17 accepts -g... yes checking for OpenMP flag of C++ compiler... -fopenmp configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpCAuA6D/R.INSTALL3520237d584303/mmand/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Array.cpp -o Array.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Componenter.cpp -o Componenter.o In file included from Componenter.cpp:6: lemon/connectivity.h: In function ‘bool lemon::stronglyConnected(const Digraph&)’: lemon/connectivity.h:268:36: warning: typedef ‘Node’ locally defined but not used [-Wunused-local-typedefs] 268 | typedef typename Digraph::Node Node; | ^~~~ lemon/connectivity.h: In function ‘int lemon::countStronglyConnectedComponents(const Digraph&)’: lemon/connectivity.h:336:35: warning: typedef ‘Arc’ locally defined but not used [-Wunused-local-typedefs] 336 | typedef typename Digraph::Arc Arc; | ^~~ lemon/connectivity.h:338:37: warning: typedef ‘ArcIt’ locally defined but not used [-Wunused-local-typedefs] 338 | typedef typename Digraph::ArcIt ArcIt; | ^~~~~ lemon/connectivity.h: In function ‘void lemon::topologicalSort(const Digraph&, NodeMap&)’: lemon/connectivity.h:1346:36: warning: typedef ‘Node’ locally defined but not used [-Wunused-local-typedefs] 1346 | typedef typename Digraph::Node Node; | ^~~~ lemon/connectivity.h:1348:35: warning: typedef ‘Arc’ locally defined but not used [-Wunused-local-typedefs] 1348 | typedef typename Digraph::Arc Arc; | ^~~ lemon/connectivity.h: In function ‘bool lemon::bipartite(const Graph&)’: lemon/connectivity.h:1561:35: warning: typedef ‘ArcIt’ locally defined but not used [-Wunused-local-typedefs] 1561 | typedef typename Graph::ArcIt ArcIt; | ^~~~~ lemon/connectivity.h: In function ‘bool lemon::bipartitePartitions(const Graph&, NodeMap&)’: lemon/connectivity.h:1606:34: warning: typedef ‘Node’ locally defined but not used [-Wunused-local-typedefs] 1606 | typedef typename Graph::Node Node; | ^~~~ lemon/connectivity.h:1608:35: warning: typedef ‘ArcIt’ locally defined but not used [-Wunused-local-typedefs] 1608 | typedef typename Graph::ArcIt ArcIt; | ^~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Distancer.cpp -o Distancer.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Kernel.cpp -o Kernel.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Morpher.cpp -o Morpher.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Resampler.cpp -o Resampler.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c main.cpp -o main.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o mmand.so Array.o Componenter.o Distancer.o Kernel.o Morpher.o Resampler.o main.o -fopenmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpCAuA6D/R.INSTALL3520237d584303/mmand/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mmand/00new/mmand/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mmand) checking hyperSpec_0.100.3.tar.gz ... checking OpenSpecy_1.5.3.tar.gz ... checking ir_0.4.1.tar.gz ... checking photobiologyInOut_0.4.32.tar.gz ... Depends: Package: hyperSpec Depends: R (>= 3.6.0), lattice, grid, ggplot2 (>= 2.2.0), xml2 Imports: testthat, methods, utils, latticeExtra, lazyeval, dplyr, rlang Timings: user system elapsed hyperSpec 94.973 6.352 103.639 Results: Check status summary: OK Source packages 1 Reverse depends 3 Check results summary: hyperSpec ... OK rdepends_ir ... OK rdepends_OpenSpecy ... OK rdepends_photobiologyInOut ... OK Check results changes: Package: OpenSpecy Check: CRAN incoming feasibility Old result: NOTE