downloading reverse dependencies ‘NetGreg’, ‘BDgraph’, ‘CompareCausalNetworks’, ‘CTD’, ‘edgebundleR’, ‘pcalg’, ‘qgraph’, ‘sand’, ‘sdafilter’, ‘stm’ trying URL 'file:///data/Repositories/CRAN/src/contrib/NetGreg_0.0.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/BDgraph_2.74.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CompareCausalNetworks_0.2.6.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CTD_1.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/edgebundleR_0.1.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/pcalg_2.7-12.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/qgraph_1.9.8.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/sand_2.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/sdafilter_1.0.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/stm_1.3.8.tar.gz' installing dependencies ‘backShift’, ‘BDgraph’, ‘CAM’, ‘eigenmodel’, ‘flare’, ‘GOstats’, ‘huge’, ‘InvariantCausalPrediction’, ‘LDAvis’, ‘networkTomography’, ‘ngspatial’, ‘org.Sc.sgd.db’, ‘pfa’, ‘plsgenomics’, ‘POET’, ‘selectiveInference’, ‘ssgraph’, ‘vioplot’ Warning: packages ‘CAM’, ‘networkTomography’, ‘pfa’ are not available for this version of R Versions of these packages for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘Category’, ‘AnnotationForge’, ‘batchmeans’ begin installing package ‘Category’ begin installing package ‘AnnotationForge’ begin installing package ‘batchmeans’ begin installing package ‘plsgenomics’ begin installing package ‘InvariantCausalPrediction’ begin installing package ‘backShift’ begin installing package ‘flare’ begin installing package ‘BDgraph’ begin installing package ‘eigenmodel’ begin installing package ‘org.Sc.sgd.db’ begin installing package ‘vioplot’ begin installing package ‘POET’ begin installing package ‘selectiveInference’ begin installing package ‘LDAvis’ begin installing package ‘huge’ * installing *source* package ‘batchmeans’ ... ** this is package ‘batchmeans’ version ‘1.0-4’ ** package ‘batchmeans’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (batchmeans) begin installing package ‘ngspatial’ * installing *source* package ‘POET’ ... ** this is package ‘POET’ version ‘2.0’ ** package ‘POET’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (POET) * installing *source* package ‘eigenmodel’ ... ** this is package ‘eigenmodel’ version ‘1.12’ ** package ‘eigenmodel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (eigenmodel) * installing *source* package ‘LDAvis’ ... ** this is package ‘LDAvis’ version ‘0.3.2’ ** package ‘LDAvis’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LDAvis) * installing *source* package ‘vioplot’ ... ** this is package ‘vioplot’ version ‘0.5.1’ ** package ‘vioplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vioplot) * installing *source* package ‘backShift’ ... ** this is package ‘backShift’ version ‘0.1.4.3’ ** package ‘backShift’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-14) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3EdzLS/R.INSTALL32faec182a9693/backShift/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c backShift_init.c -o backShift_init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c evallf.c -o evallf.o evallf.c: In function ‘evallf’: evallf.c:21:34: warning: missing braces around initializer [-Wmissing-braces] 21 | double del[MAX_VARS][MAX_VARS]={0.0}, subdel[MAX_VARS][MAX_VARS]={0.0},c,d; | ^ | { } evallf.c:21:68: warning: missing braces around initializer [-Wmissing-braces] 21 | double del[MAX_VARS][MAX_VARS]={0.0}, subdel[MAX_VARS][MAX_VARS]={0.0},c,d; | ^ | { } gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ffdiag.c -o ffdiag.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o backShift.so backShift_init.o evallf.o ffdiag.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3EdzLS/R.INSTALL32faec182a9693/backShift/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-backShift/00new/backShift/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (backShift) * installing *source* package ‘InvariantCausalPrediction’ ... ** this is package ‘InvariantCausalPrediction’ version ‘0.8’ ** package ‘InvariantCausalPrediction’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (InvariantCausalPrediction) * installing *source* package ‘plsgenomics’ ... ** this is package ‘plsgenomics’ version ‘1.5-3’ ** package ‘plsgenomics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plsgenomics) * installing *source* package ‘flare’ ... ** this is package ‘flare’ version ‘1.8’ ** package ‘flare’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-14) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4NUmWE/R.INSTALL32faf2211a42b7/flare/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SFGen.c -o SFGen.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c euc_proj.c -o euc_proj.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mymath.c -o mymath.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_dantzig_ladm_scr.c -o slim_dantzig_ladm_scr.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_lad_ladm_scr_btr.c -o slim_lad_ladm_scr_btr.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_lasso_ladm_scr.c -o slim_lasso_ladm_scr.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_lq_ladm_scr_btr.c -o slim_lq_ladm_scr_btr.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_sqrt_ladm_scr.c -o slim_sqrt_ladm_scr.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slimh.c -o slimh.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sugm_clime_ladm_scr.c -o sugm_clime_ladm_scr.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sugm_tiger_ladm_scr.c -o sugm_tiger_ladm_scr.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o flare.so SFGen.o euc_proj.o mymath.o registerDynamicSymbol.o slim_dantzig_ladm_scr.o slim_lad_ladm_scr_btr.o slim_lasso_ladm_scr.o slim_lq_ladm_scr_btr.o slim_sqrt_ladm_scr.o slimh.o sugm_clime_ladm_scr.o sugm_tiger_ladm_scr.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4NUmWE/R.INSTALL32faf2211a42b7/flare/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-flare/00new/flare/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flare) * installing *source* package ‘org.Sc.sgd.db’ ... ** this is package ‘org.Sc.sgd.db’ version ‘3.22.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (org.Sc.sgd.db) * installing *source* package ‘AnnotationForge’ ... ** this is package ‘AnnotationForge’ version ‘1.53.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AnnotationForge) * installing *source* package ‘ngspatial’ ... ** this is package ‘ngspatial’ version ‘1.2-2’ ** package ‘ngspatial’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-14) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-14) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpB4q2m9/R.INSTALL32fe045281f55b/ngspatial/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ngspatialmod.cpp -o ngspatialmod.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o ngspatial.so RcppExports.o init.o ngspatialmod.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpB4q2m9/R.INSTALL32fe045281f55b/ngspatial/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ngspatial/00new/ngspatial/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ngspatial) * installing *source* package ‘Category’ ... ** this is package ‘Category’ version ‘2.77.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Category) begin installing package ‘GOstats’ * installing *source* package ‘selectiveInference’ ... ** this is package ‘selectiveInference’ version ‘1.2.5’ ** package ‘selectiveInference’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-14) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-14) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpI9v5Rr/R.INSTALL32fafe71a05cb8/selectiveInference/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DCOLUMN_MAJOR_ORDER -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Rcpp-debias.cpp -o Rcpp-debias.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DCOLUMN_MAJOR_ORDER -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Rcpp-matrixcomps.cpp -o Rcpp-matrixcomps.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DCOLUMN_MAJOR_ORDER -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Rcpp-randomized.cpp -o Rcpp-randomized.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DCOLUMN_MAJOR_ORDER -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DCOLUMN_MAJOR_ORDER -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I. -DCOLUMN_MAJOR_ORDER -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matrixcomps.c -o matrixcomps.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DCOLUMN_MAJOR_ORDER -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I. -DCOLUMN_MAJOR_ORDER -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c quadratic_program.c -o quadratic_program.o quadratic_program.c: In function ‘solve_qp’: quadratic_program.c:424:29: warning: ‘old_value’ may be used uninitialized [-Wmaybe-uninitialized] 424 | if ((fabs(old_value - new_value) < objective_tol * fabs(new_value)) && (iter > 0)) { | ~~~~~~~~~~^~~~~~~~~~~ quadratic_program.c:292:10: note: ‘old_value’ was declared here 292 | double old_value, new_value; | ^~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DCOLUMN_MAJOR_ORDER -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I. -DCOLUMN_MAJOR_ORDER -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c quadratic_program_wide.c -o quadratic_program_wide.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DCOLUMN_MAJOR_ORDER -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I. -DCOLUMN_MAJOR_ORDER -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c randomized_lasso.c -o randomized_lasso.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DCOLUMN_MAJOR_ORDER -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I. -DCOLUMN_MAJOR_ORDER -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c selective_mle.c -o selective_mle.o /home/hornik/tmp/R-d-gcc-15/bin/Rscript -e "library(Rcpp); Rcpp::compileAttributes('..')" g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o selectiveInference.so Rcpp-debias.o Rcpp-matrixcomps.o Rcpp-randomized.o RcppExports.o matrixcomps.o quadratic_program.o quadratic_program_wide.o randomized_lasso.o selective_mle.o -L. -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpI9v5Rr/R.INSTALL32fafe71a05cb8/selectiveInference/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-selectiveInference/00new/selectiveInference/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (selectiveInference) * installing *source* package ‘huge’ ... ** this is package ‘huge’ version ‘1.5’ ** using staged installation configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-14) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptNKpBY/R.INSTALL32fb02296c9c17/huge/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c RIC.cpp -o RIC.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c SFGen.cpp -o SFGen.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c SPMBgraph.cpp -o SPMBgraph.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c SPMBgraphsqrt.cpp -o SPMBgraphsqrt.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c huge_core.cpp -o huge_core.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c hugeglasso.cpp -o hugeglasso.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o huge.so RIC.o RcppExports.o SFGen.o SPMBgraph.o SPMBgraphsqrt.o huge_core.o hugeglasso.o -fopenmp -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptNKpBY/R.INSTALL32fb02296c9c17/huge/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-huge/00new/huge/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (huge) * installing *source* package ‘BDgraph’ ... ** this is package ‘BDgraph’ version ‘2.74’ ** package ‘BDgraph’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-14) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-14) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyW8G3m/R.INSTALL32faed6ad65df2/BDgraph/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c BDgraph_init.c -o BDgraph_init.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c copula.cpp -o copula.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gcgm_DMH.cpp -o gcgm_DMH.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gcgm_bd.cpp -o gcgm_bd.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gcgm_dw_bd.cpp -o gcgm_dw_bd.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ggm_DMH.cpp -o ggm_DMH.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ggm_bd.cpp -o ggm_bd.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ggm_mpl_bd.cpp -o ggm_mpl_bd.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gm_mpl_Hill_Climb.cpp -o gm_mpl_Hill_Climb.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gm_mpl_bd_dis.cpp -o gm_mpl_bd_dis.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gm_rj.cpp -o gm_rj.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c matrix.cpp -o matrix.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c omp_set_num_cores.cpp -o omp_set_num_cores.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rgwish.cpp -o rgwish.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c tgm_bd.cpp -o tgm_bd.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o BDgraph.so BDgraph_init.o copula.o gcgm_DMH.o gcgm_bd.o gcgm_dw_bd.o ggm_DMH.o ggm_bd.o ggm_mpl_bd.o gm_mpl_Hill_Climb.o gm_mpl_bd_dis.o gm_rj.o matrix.o omp_set_num_cores.o rgwish.o tgm_bd.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyW8G3m/R.INSTALL32faed6ad65df2/BDgraph/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-BDgraph/00new/BDgraph/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BDgraph) begin installing package ‘ssgraph’ * installing *source* package ‘GOstats’ ... ** this is package ‘GOstats’ version ‘2.77.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GOstats) * installing *source* package ‘ssgraph’ ... ** this is package ‘ssgraph’ version ‘1.16’ ** package ‘ssgraph’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-14) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-14) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplsVoDE/R.INSTALL33011717b67ebb/ssgraph/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c copula.cpp -o copula.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gcgm_spike_slab.cpp -o gcgm_spike_slab.o gcgm_spike_slab.cpp: In function ‘void gcgm_spike_slab_map(int*, int*, int*, double*, double*, int*, double*, double*, int*, int*, double*, char**, double*, int*, double*, int*, int*, int*, double*, double*, double*, double*, int*)’: gcgm_spike_slab.cpp:380:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 380 | for( i = 0; i < size_sample_graph; i++ ) | ^~~ gcgm_spike_slab.cpp:389:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 389 | if( !this_one || size_sample_graph == 0 ) | ^~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ggm_spike_slab.cpp -o ggm_spike_slab.o ggm_spike_slab.cpp: In function ‘void ggm_spike_slab_map(int*, int*, int*, double*, double*, int*, double*, double*, int*, int*, double*, char**, double*, int*, double*, double*, double*, double*, int*)’: ggm_spike_slab.cpp:371:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 371 | for( i = 0; i < size_sample_graph; i++ ) | ^~~ ggm_spike_slab.cpp:380:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 380 | if( !this_one || size_sample_graph == 0 ) | ^~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c matrix.cpp -o matrix.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ssgraph_init.c -o ssgraph_init.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o ssgraph.so copula.o gcgm_spike_slab.o ggm_spike_slab.o matrix.o ssgraph_init.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplsVoDE/R.INSTALL33011717b67ebb/ssgraph/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ssgraph/00new/ssgraph/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ssgraph) checking huge_1.5.tar.gz ... checking NetGreg_0.0.4.tar.gz ... checking BDgraph_2.74.tar.gz ... checking CompareCausalNetworks_0.2.6.2.tar.gz ... checking CTD_1.3.tar.gz ... checking edgebundleR_0.1.4.tar.gz ... checking pcalg_2.7-12.tar.gz ... checking sand_2.0.0.tar.gz ... checking qgraph_1.9.8.tar.gz ... checking sdafilter_1.0.1.tar.gz ... checking stm_1.3.8.tar.gz ... Depends: Package: huge Depends: R (>= 3.0.0) Imports: Matrix, igraph, MASS, grDevices, graphics, methods, stats, utils, Rcpp LinkingTo: Rcpp Timings: user system elapsed huge 86.649 7.8 87.007 Results: Check status summary: NOTE OK Source packages 1 0 Reverse depends 0 10 Check results summary: huge ... NOTE * checking tests ... [14s/6s] NOTE rdepends_BDgraph ... OK rdepends_CompareCausalNetworks ... OK rdepends_CTD ... OK rdepends_edgebundleR ... OK rdepends_NetGreg ... OK rdepends_pcalg ... OK rdepends_qgraph ... OK rdepends_sand ... OK rdepends_sdafilter ... OK rdepends_stm ... OK Check results changes: Package: CompareCausalNetworks Check: CRAN incoming feasibility Old result: NOTE Package: qgraph Check: CRAN incoming feasibility Old result: NOTE Package: stm Check: CRAN incoming feasibility Old result: NOTE