Package: infectiousR
Check: re-building of vignette outputs
New result: ERROR
  Error(s) in re-building vignettes:
    ...
  --- re-building ‘infectiousR_vignette.Rmd’ using rmarkdown
  
  Quitting from infectiousR_vignette.Rmd:83-105 [covid-stats-simple-plot]
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  <error/rlang_error>
  Error in `UseMethod()`:
  ! no applicable method for 'filter' applied to an object of class "NULL"
  ---
  Backtrace:
      ▆
   1. ├─... %>% ...
   2. ├─ggplot2::ggplot(...)
   3. ├─dplyr::mutate(., case_rate = (cases/population) * 1e+05)
   4. ├─dplyr::select(., -updated, -starts_with("today"))
   5. └─dplyr::filter(...)
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  
  Error: processing vignette 'infectiousR_vignette.Rmd' failed with diagnostics:
  no applicable method for 'filter' applied to an object of class "NULL"
  --- failed re-building ‘infectiousR_vignette.Rmd’
  
  SUMMARY: processing the following file failed:
    ‘infectiousR_vignette.Rmd’
  
  Error: Vignette re-building failed.
  Execution halted

Package: ipumsr
Check: tests
New result: ERROR
    Running ‘testthat.R’ [74s/73s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > # This file is part of the standard setup for testthat.
    > # It is recommended that you do not modify it.
    > #
    > # Where should you do additional test configuration?
    > # Learn more about the roles of various files in:
    > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
    > # * https://testthat.r-lib.org/articles/special-files.html
    > 
    > library(testthat)
    > library(ipumsr)
    > 
    > test_check("ipumsr")
    Saving _problems/test_api_process_extract-458.R
    Saving _problems/test_api_process_extract-513.R
    Saving _problems/test_api_process_extract-576.R
    Saving _problems/test_api_process_extract-637.R
    Saving _problems/test_api_process_extract-678.R
    [ FAIL 5 | WARN 0 | SKIP 6 | PASS 858 ]
    
    ══ Skipped tests (6) ═══════════════════════════════════════════════════════════
    • On CRAN (6): 'test_api_helpers.R:3:1', 'test_api_helpers.R:23:1',
      'test_micro_chunked.R:24:3', 'test_read_agg.R:7:1', 'test_read_agg.R:372:1',
      'test_shape_read.R:81:1'
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Error ('test_api_process_extract.R:454:7'): Can download microdata extract with extract object ──
    Error in `set_body(response_body, vcr_response$disk)`: length(body) <= 1 is not TRUE
    Backtrace:
         ▆
      1. ├─testthat::expect_message(...) at test_api_process_extract.R:452:3
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. ├─vcr::use_cassette(...)
      8. │ └─base::withCallingHandlers(...)
      9. └─ipumsr::download_extract(...) at test_api_process_extract.R:454:7
     10.   ├─ipumsr:::ipums_extract_specific_download(...)
     11.   └─ipumsr:::ipums_extract_specific_download.micro_extract(...)
     12.     └─ipumsr:::ipums_api_download_request(...)
     13.       └─ipumsr:::ipums_api_request(...)
     14.         └─httr::VERB(...)
     15.           └─httr:::request_perform(req, hu$handle$handle)
     16.             └─httr:::perform_callback("request", req = req)
     17.               └─vcr (local) callback(...)
     18.                 └─RequestHandlerHttr$new(req)$handle()
     19.                   └─self$on_stubbed_by_vcr_request(vcr_response)
     20.                     └─vcr:::serialize_to_httr(self$request_original, vcr_response)
     21.                       └─vcr:::set_body(response_body, vcr_response$disk)
     22.                         └─base::stopifnot(length(body) <= 1)
    ── Error ('test_api_process_extract.R:509:7'): Can download NHGIS extract with extract object ──
    <purrr_error_indexed/rlang_error/error/condition>
    Error in `purrr::map2_chr(urls, file_paths, ~ipums_api_download_request(.x, .y, overwrite = overwrite, progress = progress, api_key = api_key))`: i In index: 1.
    i With name: data.
    Caused by error in `set_body()`:
    ! length(body) <= 1 is not TRUE
    Backtrace:
         ▆
      1. ├─testthat::expect_message(...) at test_api_process_extract.R:507:3
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. ├─vcr::use_cassette(...)
      8. │ └─base::withCallingHandlers(...)
      9. ├─ipumsr::download_extract(...) at test_api_process_extract.R:509:7
     10. │ ├─ipumsr:::ipums_extract_specific_download(...)
     11. │ └─ipumsr:::ipums_extract_specific_download.agg_extract(...)
     12. │   └─purrr::map2_chr(...)
     13. │     └─purrr:::map2_("character", .x, .y, .f, ..., .progress = .progress)
     14. │       ├─purrr:::with_indexed_errors(...)
     15. │       │ └─base::withCallingHandlers(...)
     16. │       ├─purrr:::call_with_cleanup(...)
     17. │       └─ipumsr (local) .f(.x[[i]], .y[[i]], ...)
     18. │         └─ipumsr:::ipums_api_download_request(...)
     19. │           └─ipumsr:::ipums_api_request(...)
     20. │             └─httr::VERB(...)
     21. │               └─httr:::request_perform(req, hu$handle$handle)
     22. │                 └─httr:::perform_callback("request", req = req)
     23. │                   └─vcr (local) callback(...)
     24. │                     └─RequestHandlerHttr$new(req)$handle()
     25. │                       └─self$on_stubbed_by_vcr_request(vcr_response)
     26. │                         └─vcr:::serialize_to_httr(self$request_original, vcr_response)
     27. │                           └─vcr:::set_body(response_body, vcr_response$disk)
     28. │                             └─base::stopifnot(length(body) <= 1)
     29. │                               └─base::stop(simpleError(msg, call = if (p <- sys.parent(1L)) sys.call(p)))
     30. └─purrr (local) `<fn>`(`<smplErrr>`)
     31.   └─cli::cli_abort(...)
     32.     └─rlang::abort(...)
    ── Error ('test_api_process_extract.R:572:7'): Can download extract with extract id ──
    Error in `set_body(response_body, vcr_response$disk)`: length(body) <= 1 is not TRUE
    Backtrace:
         ▆
      1. ├─testthat::expect_message(...) at test_api_process_extract.R:570:3
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. ├─vcr::use_cassette(...)
      8. │ └─base::withCallingHandlers(...)
      9. └─ipumsr::download_extract(...) at test_api_process_extract.R:572:7
     10.   ├─ipumsr:::ipums_extract_specific_download(...)
     11.   └─ipumsr:::ipums_extract_specific_download.micro_extract(...)
     12.     └─ipumsr:::ipums_api_download_request(...)
     13.       └─ipumsr:::ipums_api_request(...)
     14.         └─httr::VERB(...)
     15.           └─httr:::request_perform(req, hu$handle$handle)
     16.             └─httr:::perform_callback("request", req = req)
     17.               └─vcr (local) callback(...)
     18.                 └─RequestHandlerHttr$new(req)$handle()
     19.                   └─self$on_stubbed_by_vcr_request(vcr_response)
     20.                     └─vcr:::serialize_to_httr(self$request_original, vcr_response)
     21.                       └─vcr:::set_body(response_body, vcr_response$disk)
     22.                         └─base::stopifnot(length(body) <= 1)
    ── Error ('test_api_process_extract.R:633:7'): Can download shapefile-only extract ──
    <purrr_error_indexed/rlang_error/error/condition>
    Error in `purrr::map2_chr(urls, file_paths, ~ipums_api_download_request(.x, .y, overwrite = overwrite, progress = progress, api_key = api_key))`: i In index: 1.
    i With name: shape.
    Caused by error in `set_body()`:
    ! length(body) <= 1 is not TRUE
    Backtrace:
         ▆
      1. ├─testthat::expect_message(...) at test_api_process_extract.R:631:3
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. ├─vcr::use_cassette(...)
      8. │ └─base::withCallingHandlers(...)
      9. ├─ipumsr::download_extract(...) at test_api_process_extract.R:633:7
     10. │ ├─ipumsr:::ipums_extract_specific_download(...)
     11. │ └─ipumsr:::ipums_extract_specific_download.agg_extract(...)
     12. │   └─purrr::map2_chr(...)
     13. │     └─purrr:::map2_("character", .x, .y, .f, ..., .progress = .progress)
     14. │       ├─purrr:::with_indexed_errors(...)
     15. │       │ └─base::withCallingHandlers(...)
     16. │       ├─purrr:::call_with_cleanup(...)
     17. │       └─ipumsr (local) .f(.x[[i]], .y[[i]], ...)
     18. │         └─ipumsr:::ipums_api_download_request(...)
     19. │           └─ipumsr:::ipums_api_request(...)
     20. │             └─httr::VERB(...)
     21. │               └─httr:::request_perform(req, hu$handle$handle)
     22. │                 └─httr:::perform_callback("request", req = req)
     23. │                   └─vcr (local) callback(...)
     24. │                     └─RequestHandlerHttr$new(req)$handle()
     25. │                       └─self$on_stubbed_by_vcr_request(vcr_response)
     26. │                         └─vcr:::serialize_to_httr(self$request_original, vcr_response)
     27. │                           └─vcr:::set_body(response_body, vcr_response$disk)
     28. │                             └─base::stopifnot(length(body) <= 1)
     29. │                               └─base::stop(simpleError(msg, call = if (p <- sys.parent(1L)) sys.call(p)))
     30. └─purrr (local) `<fn>`(`<smplErrr>`)
     31.   └─cli::cli_abort(...)
     32.     └─rlang::abort(...)
    ── Error ('test_api_process_extract.R:673:5'): Can download supplemental data files ──
    Error in `set_body(response_body, vcr_response$disk)`: length(body) <= 1 is not TRUE
    Backtrace:
         ▆
      1. ├─vcr::use_cassette(...) at test_api_process_extract.R:672:3
      2. │ └─base::withCallingHandlers(...)
      3. └─ipumsr::download_supplemental_data(...) at test_api_process_extract.R:673:5
      4.   └─ipumsr:::ipums_api_download_request(...)
      5.     └─ipumsr:::ipums_api_request(...)
      6.       └─httr::VERB(...)
      7.         └─httr:::request_perform(req, hu$handle$handle)
      8.           └─httr:::perform_callback("request", req = req)
      9.             └─vcr (local) callback(...)
     10.               └─RequestHandlerHttr$new(req)$handle()
     11.                 └─self$on_stubbed_by_vcr_request(vcr_response)
     12.                   └─vcr:::serialize_to_httr(self$request_original, vcr_response)
     13.                     └─vcr:::set_body(response_body, vcr_response$disk)
     14.                       └─base::stopifnot(length(body) <= 1)
    
    [ FAIL 5 | WARN 0 | SKIP 6 | PASS 858 ]
    Error:
    ! Test failures.
    Warning message:
    `check_cassette_names()` was deprecated in vcr 2.0.0. 
    Execution halted

Package: plotly
Check: tests
New result: ERROR
    Running ‘testthat.R’ [2s/17s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > library("testthat")
    > library("plotly")
    Loading required package: ggplot2
    
    Attaching package: 'plotly'
    
    The following object is masked from 'package:ggplot2':
    
        last_plot
    
    The following object is masked from 'package:stats':
    
        filter
    
    The following object is masked from 'package:graphics':
    
        layout
    
    > 
    > test_check("plotly")
    Error in `source_dir()`:
    ! Failed to evaluate './helper-skip.R'.
    Caused by error in `curl::curl_fetch_memory()`:
    ! Timeout was reached [api.r-hub.io]:
    Resolving timed out after 10001 milliseconds
    Backtrace:
         ▆
      1. ├─testthat::test_check("plotly")
      2. │ └─testthat::test_dir(...)
      3. │   └─testthat:::test_files(...)
      4. │     └─testthat:::test_files_serial(...)
      5. │       └─testthat:::test_files_setup_state(...)
      6. │         └─testthat::source_test_helpers(".", env)
      7. │           └─testthat::source_dir(path, "^helper.*\\.[rR]$", env = env, wrap = FALSE)
      8. │             └─base::lapply(...)
      9. │               └─testthat (local) FUN(X[[i]], ...)
     10. │                 └─testthat::source_file(...)
     11. │                   ├─base::withCallingHandlers(...)
     12. │                   └─base::eval(exprs, env)
     13. │                     └─base::eval(exprs, env)
     14. │                       └─rversions::r_release() at ./helper-skip.R:2:1
     15. │                         └─rversions:::api_version_df1("resolve/release", dots)
     16. │                           ├─base::as.list(api(endpoint))
     17. │                           └─rversions:::api(endpoint)
     18. │                             └─curl::curl_fetch_memory(url)
     19. ├─curl:::raise_libcurl_error(...)
     20. │ └─base::stop(e)
     21. └─testthat (local) `<fn>`(`<crl_rr__>`)
     22.   └─cli::cli_abort(...)
     23.     └─rlang::abort(...)
    Execution halted