* using log directory ‘/home/hornik/tmp/CRAN_special_donttest/httk.Rcheck’
* using R Under development (unstable) (2025-08-26 r88710)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-15 (Debian 15.2.0-1) 15.2.0
    GNU Fortran (Debian 15.2.0-1) 15.2.0
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* using option ‘--run-donttest’
* checking for file ‘httk/DESCRIPTION’ ... OK
* this is package ‘httk’ version ‘2.7.2’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [16s/24s] NOTE
Maintainer: ‘John Wambaugh <wambaugh.john@epa.gov>’

Days since last update: 6
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘httk’ can be installed ... [42s/43s] OK
* used C compiler: ‘gcc-15 (Debian 15.2.0-1) 15.2.0’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [3s/3s] OK
* checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
* checking whether the package can be unloaded cleanly ... [3s/3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
* checking loading without being on the library search path ... [3s/3s] OK
* checking whether startup messages can be suppressed ... [3s/3s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [53s/53s] OK
* checking Rd files ... [11s/11s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [1s/1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [37m/30m] ERROR
Running examples in ‘httk-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: solve_full_pregnancy
> ### Title: Solve_full_pregnancy
> ### Aliases: solve_full_pregnancy
> ### Keywords: Solve
> 
> ### ** Examples
> 
> 
> ## No test: 
> # dosing schedule of 1 mg/kg BW/day for 40 weeks
> # return solution by hour
> out <- solve_full_pregnancy(chem.name = "fipronil",  
+                            daily.dose = 1, 
+                            doses.per.day = 1,
+                            time.course = seq(0, 40*7, 1/24))
Solving for chemical: fipronil (DTXSID4034609)
>                    
>                                
> # return solution in chemical amounts for fetal compartments + placenta
> maternal_compts <- c('gutlumen', 'gut', 'liver', 'kidney', 'lung', 'ven', 'art', 
+ 'adipose','thyroid', 'rest')
> 
> fetal_compts <- c(maternal_compts[! maternal_compts %in% c('adipose', 'gutlumen') ], 
+ "brain")
> 
> amt.out <- solve_full_pregnancy(chem.name = "fipronil",  
+                                daily.dose = 1, 
+                                doses.per.day = 1,
+                                time.course = seq(0, 40*7, 1), 
+                                track.vars = c(paste0("Af", fetal_compts), "Aplacenta"))
Solving for chemical: fipronil (DTXSID4034609)
> 
> # return solution in concentrations for fetal compartments + placenta 
> conc.out <- solve_full_pregnancy(chem.name = "fipronil", 
+                                 daily.dose = 1, 
+                                 doses.per.day = 1,
+                                 time.course = seq(0, 40*7, 1), 
+                                 track.vars = c(paste0("Cf", fetal_compts), "Cplacenta"))
Solving for chemical: fipronil (DTXSID4034609)
> 
> # plot solution based on output 
> plt.out <- solve_full_pregnancy(chem.name = "genistein", 
+                                 dose = 1, plt = TRUE)
Solving for chemical: genistein (DTXSID5022308)

Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [191s/191s] OK
  Running ‘3comp_test.R’ [13s/13s]
  Comparing ‘3comp_test.Rout’ to ‘3comp_test.Rout.save’ ... OK
  Running ‘3compss_test.R’ [13s/13s]
  Comparing ‘3compss_test.Rout’ to ‘3compss_test.Rout.save’ ... OK
  Running ‘caco2_test.R’ [17s/17s]
  Comparing ‘caco2_test.Rout’ to ‘caco2_test.Rout.save’ ... OK
  Running ‘cheminfo_test.R’ [9s/9s]
  Comparing ‘cheminfo_test.Rout’ to ‘cheminfo_test.Rout.save’ ... OK
  Running ‘fetal_pbtk_testing.R’ [10s/10s]
  Comparing ‘fetal_pbtk_testing.Rout’ to ‘fetal_pbtk_testing.Rout.save’ ... OK
  Running ‘ionization_tests.R’ [3s/3s]
  Comparing ‘ionization_tests.Rout’ to ‘ionization_tests.Rout.save’ ... OK
  Running ‘ivive_test.R’ [34s/34s]
  Comparing ‘ivive_test.Rout’ to ‘ivive_test.Rout.save’ ... OK
  Running ‘montecarlo_tests.R’ [24s/24s]
  Comparing ‘montecarlo_tests.Rout’ to ‘montecarlo_tests.Rout.save’ ... OK
  Running ‘other_tests.R’ [11s/11s]
  Comparing ‘other_tests.Rout’ to ‘other_tests.Rout.save’ ... OK
  Running ‘pbtk_test.R’ [12s/12s]
  Comparing ‘pbtk_test.Rout’ to ‘pbtk_test.Rout.save’ ... OK
  Running ‘solve_dermal_test.R’ [7s/7s]
  Comparing ‘solve_dermal_test.Rout’ to ‘solve_dermal_test.Rout.save’ ... OK
  Running ‘solve_gas_test.R’ [8s/8s]
  Comparing ‘solve_gas_test.Rout’ to ‘solve_gas_test.Rout.save’ ... OK
  Running ‘testthat.R’ [24s/24s]
  Running ‘unit_test.R’ [6s/6s]
  Comparing ‘unit_test.Rout’ to ‘unit_test.Rout.save’ ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [136s/140s] OK
* checking PDF version of manual ... [29s/30s] OK
* checking HTML version of manual ... [14s/16s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE