* using log directory ‘/srv/hornik/tmp/CRAN_pretest/httk.Rcheck’ * using R Under development (unstable) (2025-08-17 r88631) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (3+b1) Debian flang-new version 19.1.7 (3+b1) * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * checking for file ‘httk/DESCRIPTION’ ... OK * this is package ‘httk’ version ‘2.7.1’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [8s/132s] NOTE Maintainer: ‘John Wambaugh ’ Found the following (possibly) invalid URLs: URL: http://comptox.epa.gov/dashboard From: man/get_2023pfasinfo.Rd man/parameterize_1tri_pbtk.Rd man/solve_1tri_pbtk.Rd man/solve_dermal_pbtk.Rd man/solve_fetal_pbtk.Rd man/solve_full_pregnancy.Rd Status: Error Message: Timeout was reached [comptox.epa.gov]: Connection timed out after 60000 milliseconds URL: https://comptox.epa.gov/dashboard From: man/EPA.ref.Rd man/armitage_eval.Rd man/calc_analytic_css.Rd man/calc_analytic_css_1comp.Rd man/calc_analytic_css_3comp.Rd man/calc_analytic_css_3comp2.Rd man/calc_analytic_css_3compss.Rd man/calc_analytic_css_pbtk.Rd man/calc_analytic_css_sumclearances.Rd man/calc_clearance_frac.Rd man/calc_css.Rd man/calc_dermal_equiv.Rd man/calc_elimination_rate.Rd man/calc_fbio.oral.Rd man/calc_fup_correction.Rd man/calc_half_life.Rd man/calc_hep_bioavailability.Rd man/calc_hep_clearance.Rd man/calc_hep_fu.Rd man/calc_hepatic_clearance.Rd man/calc_kair.Rd man/calc_ma.Rd man/calc_mc_css.Rd man/calc_mc_oral_equiv.Rd man/calc_mc_tk.Rd man/calc_rblood2plasma.Rd man/calc_stats.Rd man/calc_tkstats.Rd man/calc_vdist.Rd man/check_model.Rd man/chem.physical_and_invitro.data.Rd man/convert_solve_x.Rd man/convert_units.Rd man/create_mc_samples.Rd man/get_caco2.Rd man/get_chem_id.Rd man/get_cheminfo.Rd man/get_clint.Rd man/get_fbio.Rd man/get_fup.Rd man/get_input_param_timeseries.Rd man/get_lit_oral_equiv.Rd man/honda2023.data.Rd man/honda2023.qspr.Rd man/kramer_eval.Rd man/parameterize_1comp.Rd man/parameterize_dermal_pbtk.Rd man/parameterize_fetal_pbtk.Rd man/parameterize_gas_pbtk.Rd man/parameterize_pbtk.Rd man/parameterize_pfas1comp.Rd man/parameterize_schmitt.Rd man/parameterize_steadystate.Rd man/parameterize_sumclearances.Rd man/parameterize_sumclearancespfas.Rd man/predict_partitioning_schmitt.Rd man/solve_1comp.Rd man/solve_1comp_lifestage.Rd man/solve_3comp.Rd man/solve_3comp2.Rd man/solve_3comp_lifestage.Rd man/solve_gas_pbtk.Rd man/solve_model.Rd man/solve_pbtk.Rd man/solve_pbtk_lifestage.Rd inst/doc/V2_IntrotoIVIVE.html NEWS.md Status: Error Message: Timeout was reached [comptox.epa.gov]: Connection timed out after 60031 milliseconds URL: https://comptox.epa.gov/dashboard/ From: inst/doc/V2_IntrotoIVIVE.html Status: Error Message: Timeout was reached [comptox.epa.gov]: Operation timed out after 60031 milliseconds with 0 bytes received URL: https://comptox.epa.gov/dashboard/chemical_lists/swisspharma From: man/pharma.Rd Status: Error Message: Timeout was reached [comptox.epa.gov]: Operation timed out after 60031 milliseconds with 0 bytes received URL: https://cran.r-project.org/web/packages/invivoPKfit/index.html From: NEWS.md Status: 200 Message: OK CRAN URL not in canonical form URL: https://github.com/USEPA/CompTox-ExpoCast-httk/httk/LICENSE.md From: README.md Status: 404 Message: Not Found The canonical URL of the CRAN page for a package is https://CRAN.R-project.org/package=pkgname * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘httk’ can be installed ... [20s/20s] OK * used C compiler: ‘Debian clang version 19.1.7 (3+b1)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/2s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking whether startup messages can be suppressed ... [2s/2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [24s/24s] OK * checking Rd files ... [5s/5s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [1s/1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [54s/54s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [106s/106s] OK Running ‘1comp_test.R’ [10s/10s] Comparing ‘1comp_test.Rout’ to ‘1comp_test.Rout.save’ ... OK Running ‘3comp_test.R’ [7s/7s] Comparing ‘3comp_test.Rout’ to ‘3comp_test.Rout.save’ ... OK Running ‘3compss_test.R’ [6s/6s] Comparing ‘3compss_test.Rout’ to ‘3compss_test.Rout.save’ ... OK Running ‘adddata_test.R’ [4s/4s] Comparing ‘adddata_test.Rout’ to ‘adddata_test.Rout.save’ ... OK Running ‘caco2_test.R’ [9s/9s] Comparing ‘caco2_test.Rout’ to ‘caco2_test.Rout.save’ ... OK Running ‘cheminfo_test.R’ [4s/4s] Comparing ‘cheminfo_test.Rout’ to ‘cheminfo_test.Rout.save’ ... OK Running ‘fetal_pbtk_testing.R’ [5s/5s] Comparing ‘fetal_pbtk_testing.Rout’ to ‘fetal_pbtk_testing.Rout.save’ ... OK Running ‘ionization_tests.R’ [1s/1s] Comparing ‘ionization_tests.Rout’ to ‘ionization_tests.Rout.save’ ... OK Running ‘ivive_test.R’ [16s/16s] Comparing ‘ivive_test.Rout’ to ‘ivive_test.Rout.save’ ... OK Running ‘montecarlo_tests.R’ [12s/12s] Comparing ‘montecarlo_tests.Rout’ to ‘montecarlo_tests.Rout.save’ ... OK Running ‘other_tests.R’ [5s/5s] Comparing ‘other_tests.Rout’ to ‘other_tests.Rout.save’ ... OK Running ‘pbtk_test.R’ [5s/5s] Comparing ‘pbtk_test.Rout’ to ‘pbtk_test.Rout.save’ ... OK Running ‘solve_dermal_test.R’ [4s/4s] Comparing ‘solve_dermal_test.Rout’ to ‘solve_dermal_test.Rout.save’ ... OK Running ‘solve_gas_test.R’ [4s/4s] Comparing ‘solve_gas_test.Rout’ to ‘solve_gas_test.Rout.save’ ... OK Running ‘testthat.R’ [11s/11s] Running ‘unit_test.R’ [3s/3s] Comparing ‘unit_test.Rout’ to ‘unit_test.Rout.save’ ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [77s/77s] OK * checking PDF version of manual ... [11s/11s] OK * checking HTML version of manual ... [6s/6s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE