* using log directory ‘/srv/hornik/tmp/CRAN/httk.Rcheck’ * using R Under development (unstable) (2024-03-20 r86162) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.6 (5) Debian flang-new version 17.0.6 (5) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘httk/DESCRIPTION’ ... OK * this is package ‘httk’ version ‘2.3.1’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [7s/13s] NOTE Maintainer: ‘John Wambaugh ’ New submission Package was archived on CRAN Possibly misspelled words in DESCRIPTION: HTTK (17:68, 19:35, 20:48) IVIVE (8:73, 31:72) MCSim (22:59) PBTK (13:71) Pearce (9:51, 30:15) Pre (5:14) RTK (34:40) Tox (33:28) ToxCast (33:35) Toxicokinetics (4:24) Wambaugh (27:15) Wetmore (35:15) al (9:61, 25:23, 27:27, 30:25, 35:26) bioinformatics (9:19) dosimetry (34:14) et (9:58, 25:20, 27:24, 30:22, 35:23) silico (15:53) toxicokinetics (8:14, 11:43, 17:51) vitro (6:53, 8:43, 11:17, 15:36, 18:32) vivo (8:52, 19:65, 21:23) CRAN repository db overrides: X-CRAN-Comment: Archived on 2024-03-21 as issues were not corrected in time. Found the following (possibly) invalid URLs: URL: https://clowder.edap-cluster.com/datasets/6364026ee4b04f6bb1409eda?space=62bb560ee4b07abf29f88fef From: inst/doc/V2_IntrotoIVIVE.html Status: 404 Message: Not Found URL: https://ehp.niehs.nih.gov/doi/full/10.1289/EHP2920 From: man/wang2018.Rd Status: 403 Message: Forbidden URL: https://gaftp.epa.gov/comptox/High_Throughput_Screening_Data/Previous_Data/ToxCast_Data_Release_Oct_2015/MySQL_Data/ From: man/wambaugh2019.tox21.Rd Status: Error Message: server certificate verification failed. CAfile: none CRLfile: none (Status without verification: OK) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘httk’ can be installed ... [14s/14s] OK * used C compiler: ‘Debian clang version 17.0.6 (5)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [19s/19s] OK * checking Rd files ... [3s/3s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [29s/29s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [60s/60s] OK Running ‘1comp_test.R’ [4s/4s] Comparing ‘1comp_test.Rout’ to ‘1comp_test.Rout.save’ ... OK Running ‘3comp_test.R’ [4s/4s] Comparing ‘3comp_test.Rout’ to ‘3comp_test.Rout.save’ ... OK Running ‘3compss_test.R’ [2s/2s] Comparing ‘3compss_test.Rout’ to ‘3compss_test.Rout.save’ ... OK Running ‘adddata_test.R’ [3s/3s] Comparing ‘adddata_test.Rout’ to ‘adddata_test.Rout.save’ ... OK Running ‘caco2_test.R’ [4s/4s] Comparing ‘caco2_test.Rout’ to ‘caco2_test.Rout.save’ ... OK Running ‘cheminfo_test.R’ [3s/3s] Comparing ‘cheminfo_test.Rout’ to ‘cheminfo_test.Rout.save’ ... OK Running ‘fetal_pbtk_testing.R’ [3s/3s] Comparing ‘fetal_pbtk_testing.Rout’ to ‘fetal_pbtk_testing.Rout.save’ ... OK Running ‘ivive_test.R’ [7s/7s] Comparing ‘ivive_test.Rout’ to ‘ivive_test.Rout.save’ ... OK Running ‘montecarlo_tests.R’ [9s/9s] Comparing ‘montecarlo_tests.Rout’ to ‘montecarlo_tests.Rout.save’ ... OK Running ‘other_tests.R’ [13s/13s] Comparing ‘other_tests.Rout’ to ‘other_tests.Rout.save’ ... OK Running ‘pbtk_test.R’ [3s/3s] Comparing ‘pbtk_test.Rout’ to ‘pbtk_test.Rout.save’ ... OK Running ‘solve_gas_test.R’ [3s/3s] Comparing ‘solve_gas_test.Rout’ to ‘solve_gas_test.Rout.save’ ... OK Running ‘unit_test.R’ [2s/2s] Comparing ‘unit_test.Rout’ to ‘unit_test.Rout.save’ ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [90s/90s] OK * checking PDF version of manual ... [9s/9s] OK * checking HTML version of manual ... [5s/5s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE