* using log directory ‘/srv/hornik/tmp/CRAN_pretest/htsDegenerateR.Rcheck’
* using R Under development (unstable) (2024-12-01 r87412)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.1 (1)
    Debian flang-new version 19.1.1 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘htsDegenerateR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘htsDegenerateR’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘Louis Steinmeister <louis.steinmeister@udo.edu>’

New submission

Possibly misspelled words in DESCRIPTION:
  MinT (8:24, 8:439)
  hts (8:47)
  implemenation (8:29)

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Louis",
                    family = "Steinmeister",
                    role = c("aut", "cre"),
                    email = "louis.steinmeister@udo.edu")
as necessary.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘htsDegenerateR’ can be installed ... [3s/3s] WARNING
Found the following significant warnings:
  Warning: replacing previous import ‘Matrix::det’ by ‘SparseM::det’ when loading ‘htsDegenerateR’
See ‘/srv/hornik/tmp/CRAN_pretest/htsDegenerateR.Rcheck/00install.out’ for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard files/directories found at top level:
  ‘CRAN-SUBMISSION’ ‘cran-comments.md’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/5s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [3s/3s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING, 2 NOTEs