* using log directory ‘/srv/hornik/tmp/CRAN/hmmm.Rcheck’
* using R Under development (unstable) (2024-04-23 r86473)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (5)
    Debian flang-new version 17.0.6 (5)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘hmmm/DESCRIPTION’ ... OK
* this is package ‘hmmm’ version ‘1.0-5’
* checking CRAN incoming feasibility ... [4s/4s] Note_to_CRAN_maintainers
Maintainer: ‘Colombi Roberto <colombi@unibg.it>’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘hmmm’ can be installed ... [2s/2s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/5s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/1s] ERROR
Running examples in ‘hmmm-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: hidden.emfit
> ### Title: ML estimation of a multinomial hidden Markov model
> ### Aliases: hidden.emfit
> ### Keywords: models
> 
> ### ** Examples
> data(drinks)
> y<-cbind(drinks$lemon.tea,drinks$orange.juice)
> fm<-c("l-l-l")
> fmargobs<-marg.list(fm)
> #initial values of transition matrix and obs distribution given the two latent states
> Ptr<-matrix(c(0.941, 0.199,0.059, 0.801),2,2,byrow=TRUE)
> Ptobs<-matrix(c(0.053, 0.215, 0.206, 0.001, 0.039, 0.021, 0.020, 0.176, 0.270,
+                 0.000, 0.000, 0.000, 0.048, 0.263, 0.360, 0.065, 0.053, 0.211),
+ 2,9,byrow=TRUE)
> find<-~lat+lat*tea+lat*juice   # lat is the latent variable
> model.obsf<-hmmm.model(marg=fmargobs,
+ lev=c(2,3,3),names=c("lat","tea","juice"),formula=find)
> 
> # model of independent observed variables given the latent states
> modelind<-hidden.emfit(y,model.obsf,y.eps=0.01,maxit=10,maxiter=2500,
+ old.tran.p=Ptr,bb=Ptobs)
Error in while (((norm.diff > norm.diff.conv) || (norm.score > norm.score.conv)) &  : 
  missing value where TRUE/FALSE needed
Calls: hidden.emfit -> hidden.emfit.S -> hmmm.mlfit -> mphineq.fit
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [19s/18s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR