* installing *source* package ‘hictkR’ ... ** this is package ‘hictkR’ version ‘0.1.0’ ** using staged installation TMPDIR='/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/' ### BEGIN cleanup #!/bin/sh set -x rm -f "$0" "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/src/Makevars" find "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/src" -type f -name '*.o' -delete -print find "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/src" -type f -name '*.so' -delete -print ### END cleanup % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 65996 100 65996 0 0 180k 0 --:--:-- --:--:-- --:--:-- 180k downloading uv 0.8.5 x86_64-unknown-linux-gnu no checksums to verify installing to /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp//uv-install uv uvx everything's installed! Using CPython 3.13.5 interpreter at: /usr/bin/python3.13 Creating virtual environment at: scratch/tmp//venv Using Python 3.13.5 environment at: scratch/tmp/venv Resolved 17 packages in 1.37s Building conan==2.19.1 Building patch-ng==1.18.1 Downloading cmake (26.5MiB) Built patch-ng==1.18.1 Built conan==2.19.1 Downloading cmake Prepared 17 packages in 748ms Installed 17 packages in 52ms + certifi==2025.8.3 + charset-normalizer==3.4.3 + cmake==3.31.6 + colorama==0.4.6 + conan==2.19.1 + distro==1.8.0 + fasteners==0.20 + idna==3.10 + jinja2==3.1.6 + markupsafe==3.0.2 + ninja==1.13.0 + patch-ng==1.18.1 + python-dateutil==2.9.0.post0 + pyyaml==6.0.2 + requests==2.32.5 + six==1.17.0 + urllib3==2.0.7 /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp//venv//bin//conan Conan version 2.19.1 [2025-08-18 23:34:16,654] INFO: Using /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/tmphovv_wit as tmpdir [2025-08-18 23:34:16,654] INFO: skipping venv creation... [2025-08-18 23:34:16,654] INFO: CONAN_HOME=/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2 detect_api: CC and CXX: /usr/bin/clang, /usr/bin/clang++ detect_api: Found clang 19.1 detect_api: clang>=8, using the major as version detect_api: gcc C++ standard library: libstdc++11 Detected profile: WARN: This profile is a guess of your environment, please check it. WARN: The output of this command is not guaranteed to be stable and can change in future Conan versions. WARN: Use your own profile files for stability. Saving detected profile to /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/profiles/hictkR [settings] arch=x86_64 build_type=Release compiler=clang compiler.cppstd=gnu17 compiler.libcxx=libstdc++11 compiler.version=19 os=Linux [2025-08-18 23:34:17,719] INFO: [settings] arch=x86_64 build_type=Release compiler=clang compiler.cppstd=gnu17 compiler.libcxx=libstdc++11 compiler.version=19 os=Linux ======== Exporting recipe to the cache ======== hictk/2.1.4: Exporting package recipe: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/tools/conanfile.py hictk/2.1.4: Calling export_sources() hictk/2.1.4: Copied 1 '.py' file: conanfile.py hictk/2.1.4: Copied 1 '.patch' file: hictk_v2.1.4_eigen_include.patch hictk/2.1.4: Exported to cache folder: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/hictkf2814bce4efa4/e hictk/2.1.4: Exported: hictk/2.1.4#99a93950b1f41becaac3cc1942c584d1 (2025-08-18 21:34:18 UTC) ======== Input profiles ======== Profile host: [settings] arch=x86_64 build_type=Release compiler=clang compiler.cppstd=17 compiler.libcxx=libstdc++11 compiler.version=19 os=Linux [conf] tools.cmake.cmaketoolchain:generator=Ninja Profile build: [settings] arch=x86_64 build_type=Release compiler=clang compiler.cppstd=gnu17 compiler.libcxx=libstdc++11 compiler.version=19 os=Linux ======== Computing dependency graph ======== hictk/2.1.4: Checking remote: conancenter Connecting to remote 'conancenter' anonymously arrow/21.0.0: Not found in local cache, looking in remotes... arrow/21.0.0: Checking remote: conancenter arrow/21.0.0: Downloaded recipe revision 228b4b648a5100809cd7d17451d87233 mimalloc/1.7.6: Not found in local cache, looking in remotes... mimalloc/1.7.6: Checking remote: conancenter mimalloc/1.7.6: Downloaded recipe revision 38e7b2fbff43efcae957e6a530a62b76 cmake/3.31.8: Not found in local cache, looking in remotes... cmake/3.31.8: Checking remote: conancenter cmake/3.31.8: Downloaded recipe revision dde3bde00bb843687e55aea5afa0e220 boost/1.88.0: Not found in local cache, looking in remotes... boost/1.88.0: Checking remote: conancenter boost/1.88.0: Downloaded recipe revision 14ecfc01dd5a690f15e1318e56a6b78c b2/5.3.3: Not found in local cache, looking in remotes... b2/5.3.3: Checking remote: conancenter b2/5.3.3: Downloaded recipe revision 107c15377719889654eb9a162a673975 xsimd/13.0.0: Not found in local cache, looking in remotes... xsimd/13.0.0: Checking remote: conancenter xsimd/13.0.0: Downloaded recipe revision 3e7543dc526b0f612fe291e0f198c9dc zlib/1.3.1: Not found in local cache, looking in remotes... zlib/1.3.1: Checking remote: conancenter zlib/1.3.1: Downloaded recipe revision b8bc2603263cf7eccbd6e17e66b0ed76 re2/20230301: Not found in local cache, looking in remotes... re2/20230301: Checking remote: conancenter re2/20230301: Downloaded recipe revision dfd6e2bf050eb90ddd8729cfb4c844a4 bshoshany-thread-pool/5.0.0: Not found in local cache, looking in remotes... bshoshany-thread-pool/5.0.0: Checking remote: conancenter bshoshany-thread-pool/5.0.0: Downloaded recipe revision d94da300363f0c35b8f41b2c5490c94d concurrentqueue/1.0.4: Not found in local cache, looking in remotes... concurrentqueue/1.0.4: Checking remote: conancenter concurrentqueue/1.0.4: Downloaded recipe revision 1e48e1c712bcfd892087c9c622a51502 eigen/3.4.0: Not found in local cache, looking in remotes... eigen/3.4.0: Checking remote: conancenter eigen/3.4.0: Downloaded recipe revision 2e192482a8acff96fe34766adca2b24c fast_float/8.0.2: Not found in local cache, looking in remotes... fast_float/8.0.2: Checking remote: conancenter fast_float/8.0.2: Downloaded recipe revision 846ad0ebab16bc265c511095c3b490e9 fmt/11.2.0: Not found in local cache, looking in remotes... fmt/11.2.0: Checking remote: conancenter fmt/11.2.0: Downloaded recipe revision 579bb2cdf4a7607621beea4eb4651e0f hdf5/1.14.6: Not found in local cache, looking in remotes... hdf5/1.14.6: Checking remote: conancenter hdf5/1.14.6: Downloaded recipe revision 6f1acd01d23d00735fe97300f4d5980c highfive/2.10.0: Not found in local cache, looking in remotes... highfive/2.10.0: Checking remote: conancenter highfive/2.10.0: Downloaded recipe revision 75c849a0d940b2d4dae6055915132690 libdeflate/1.23: Not found in local cache, looking in remotes... libdeflate/1.23: Checking remote: conancenter libdeflate/1.23: Downloaded recipe revision 4994bea7cf7e93789da161fac8e26a53 parallel-hashmap/2.0.0: Not found in local cache, looking in remotes... parallel-hashmap/2.0.0: Checking remote: conancenter parallel-hashmap/2.0.0: Downloaded recipe revision 82acae64ffe2693fff5fb3f9df8e1746 readerwriterqueue/1.0.6: Not found in local cache, looking in remotes... readerwriterqueue/1.0.6: Checking remote: conancenter readerwriterqueue/1.0.6: Downloaded recipe revision aaa5ff6fac60c2aee591e9e51b063b83 span-lite/0.11.0: Not found in local cache, looking in remotes... span-lite/0.11.0: Checking remote: conancenter span-lite/0.11.0: Downloaded recipe revision 519fd49fff711674cfed8cd17d4ed422 spdlog/1.15.3: Not found in local cache, looking in remotes... spdlog/1.15.3: Checking remote: conancenter spdlog/1.15.3: Downloaded recipe revision 3ca0e9e6b83af4d0151e26541d140c86 zstd/1.5.7: Not found in local cache, looking in remotes... zstd/1.5.7: Checking remote: conancenter zstd/1.5.7: Downloaded recipe revision fde461c0d847a22f16d3066774f61b11 cmake/4.1.0: Not found in local cache, looking in remotes... cmake/4.1.0: Checking remote: conancenter cmake/4.1.0: Downloaded recipe revision c45377ac8029e0a1738a0c40269991c3 Graph root cli Requirements arrow/21.0.0#228b4b648a5100809cd7d17451d87233 - Downloaded (conancenter) boost/1.88.0#14ecfc01dd5a690f15e1318e56a6b78c - Downloaded (conancenter) bshoshany-thread-pool/5.0.0#d94da300363f0c35b8f41b2c5490c94d - Downloaded (conancenter) concurrentqueue/1.0.4#1e48e1c712bcfd892087c9c622a51502 - Downloaded (conancenter) eigen/3.4.0#2e192482a8acff96fe34766adca2b24c - Downloaded (conancenter) fast_float/8.0.2#846ad0ebab16bc265c511095c3b490e9 - Downloaded (conancenter) fmt/11.2.0#579bb2cdf4a7607621beea4eb4651e0f - Downloaded (conancenter) hdf5/1.14.6#6f1acd01d23d00735fe97300f4d5980c - Downloaded (conancenter) hictk/2.1.4#99a93950b1f41becaac3cc1942c584d1 - Not in remote highfive/2.10.0#75c849a0d940b2d4dae6055915132690 - Downloaded (conancenter) libdeflate/1.23#4994bea7cf7e93789da161fac8e26a53 - Downloaded (conancenter) mimalloc/1.7.6#38e7b2fbff43efcae957e6a530a62b76 - Downloaded (conancenter) parallel-hashmap/2.0.0#82acae64ffe2693fff5fb3f9df8e1746 - Downloaded (conancenter) re2/20230301#dfd6e2bf050eb90ddd8729cfb4c844a4 - Downloaded (conancenter) readerwriterqueue/1.0.6#aaa5ff6fac60c2aee591e9e51b063b83 - Downloaded (conancenter) span-lite/0.11.0#519fd49fff711674cfed8cd17d4ed422 - Downloaded (conancenter) spdlog/1.15.3#3ca0e9e6b83af4d0151e26541d140c86 - Downloaded (conancenter) xsimd/13.0.0#3e7543dc526b0f612fe291e0f198c9dc - Downloaded (conancenter) zlib/1.3.1#b8bc2603263cf7eccbd6e17e66b0ed76 - Downloaded (conancenter) zstd/1.5.7#fde461c0d847a22f16d3066774f61b11 - Downloaded (conancenter) Build requirements b2/5.3.3#107c15377719889654eb9a162a673975 - Downloaded (conancenter) cmake/3.31.8#dde3bde00bb843687e55aea5afa0e220 - Downloaded (conancenter) cmake/4.1.0#c45377ac8029e0a1738a0c40269991c3 - Downloaded (conancenter) Resolved version ranges b2/[>=5.2 <6]: b2/5.3.3 cmake/[>=3.18 <4]: cmake/3.31.8 cmake/[>=3.25 <4]: cmake/3.31.8 cmake/[>=3.25]: cmake/4.1.0 zlib/[>=1.2.11 <2]: zlib/1.3.1 Overrides fmt/11.2.0#579bb2cdf4a7607621beea4eb4651e0f: [None, 'fmt/11.2.0#579bb2cdf4a7607621beea4eb4651e0f'] boost/1.85.0: ['boost/1.88.0#14ecfc01dd5a690f15e1318e56a6b78c'] hdf5/1.14.3: ['hdf5/1.14.6#6f1acd01d23d00735fe97300f4d5980c'] ======== Computing necessary packages ======== b2/5.3.3: Forced build from source re2/20230301: Main binary package 'dc5068ba5fe1b6dbc8bed0d8e329d7004b0a76d9' missing re2/20230301: Checking 11 compatible configurations re2/20230301: 'a9885f3e322ab21e4d4c11777f78e7606066f11f': compiler.cppstd=11 re2/20230301: '7dadd422bf0b948b5bd519abc3755885cade421b': compiler.cppstd=gnu11 re2/20230301: '49db67e648ba8868ae47f757f6839b7e13fb6bc1': compiler.cppstd=14 re2/20230301: '47510377cb8e3f0df2dd6c014c15e4d36f88e880': compiler.cppstd=gnu14 re2/20230301: '827e3d345c5ef24aa8a348ee73a6583b67d4c361': compiler.cppstd=gnu17 re2/20230301: 'db11f9a53b6099eb46fba706edda9bbb1a21627f': compiler.cppstd=20 re2/20230301: '0a2bf837f8647f0bb78ced353355ab2099506b42': compiler.cppstd=gnu20 re2/20230301: '8006c24732668bb331aed676dcb21d571cd60725': compiler.cppstd=23 re2/20230301: '0e1e1b81005d7178cd2171db674e845d215c8e38': compiler.cppstd=gnu23 re2/20230301: 'e34f116fc5d5110f4812fbb20f8a0457e03e5726': compiler.cppstd=26 re2/20230301: '4e469e57c7755e474b145f0caad1ebae573b8de6': compiler.cppstd=gnu26 boost/1.88.0: Main binary package 'dc1725223e6d4655bf67314e4d4a203fb776cdd7' missing boost/1.88.0: Checking 11 compatible configurations boost/1.88.0: '9866505edb915016919505775082fc93664f44ce': compiler.cppstd=11 boost/1.88.0: '9c7c44c6f6848f299c108be5c28cc9ddd5eeb80a': compiler.cppstd=gnu11 boost/1.88.0: '28391f587e8ee7fa41a9506e8b7a78f0fd162331': compiler.cppstd=14 boost/1.88.0: 'ef01b0fd26f01958256fc47f627f7b422e2d514f': compiler.cppstd=gnu14 boost/1.88.0: '5534bf0c242e47dd6d5bd1330e151dc2da9c2873': compiler.cppstd=gnu17 boost/1.88.0: 'ab404d20664ba04fb3fcf87499114387e96ccff6': compiler.cppstd=20 boost/1.88.0: '8190caf9fbb2c13164ec9908deb6569ec406bcf7': compiler.cppstd=gnu20 boost/1.88.0: '899c28befd92b861d13176a30b9037219d56e4a1': compiler.cppstd=23 boost/1.88.0: 'ee8e4ff1056eee2912b7a7ccdea9d85f485f9ed0': compiler.cppstd=gnu23 boost/1.88.0: '9e95f5411cb1885f2273a5f78eeae884e5b09933': compiler.cppstd=26 boost/1.88.0: 'b8f9f37175b03811f0a16123c729e7b054d6fd89': compiler.cppstd=gnu26 mimalloc/1.7.6: Main binary package '7182e778f8a09f43d949188464662de5f4652380' missing mimalloc/1.7.6: Checking 13 compatible configurations mimalloc/1.7.6: '5da10248d6fb917cb22afed60f4d46b4bf60b2d4': compiler.cppstd=98 mimalloc/1.7.6: '881ebe5a4d282cff258fdb96917dd89337a45baf': compiler.cppstd=gnu98 mimalloc/1.7.6: '9a648ceace6cf5afb93f474c2349a73928340fa1': compiler.cppstd=11 mimalloc/1.7.6: '1ad138fe2a1530e64b5d36f52841d8088d91abc1': compiler.cppstd=gnu11 mimalloc/1.7.6: '7c926a75ca6f07d80ccd2df42c93903c090ef4d7': compiler.cppstd=14 mimalloc/1.7.6: '9b043b7d42d67c302384263ef800a6e2c66084cd': compiler.cppstd=gnu14 mimalloc/1.7.6: 'f7690eaff0723a1fe2303346e33f3f27f41dea55': compiler.cppstd=gnu17 mimalloc/1.7.6: '945bc955f582716074279a9a8443e3e45fbc4a13': compiler.cppstd=20 mimalloc/1.7.6: '07ced37bfc94307d9eb942ab695a247f038fe649': compiler.cppstd=gnu20 mimalloc/1.7.6: 'eafc4cd7c146e30c63412334bf9c364d3f9c6665': compiler.cppstd=23 mimalloc/1.7.6: 'f3dacdeec408a947faf63c83012a4a7b34e21cea': compiler.cppstd=gnu23 mimalloc/1.7.6: 'dfdc9b3172f0f2e561df5ed7570b9105d2d343d1': compiler.cppstd=26 mimalloc/1.7.6: '7eacd906f87015f056a1eb359508db1ed563f58a': compiler.cppstd=gnu26 arrow/21.0.0: Main binary package 'e5ce193aa93a5bceb51120e5bbe66d7b9ac453ed' missing arrow/21.0.0: Checking 7 compatible configurations arrow/21.0.0: '7e0234cbc9bb81dd5a213f814296e0b15519a5e0': compiler.cppstd=gnu17 arrow/21.0.0: 'f696795a60b260c4a0bd712d6cb0a2601877bcef': compiler.cppstd=20 arrow/21.0.0: '5eb6cf40735c6de95fefcea8c122eaf2f6244d09': compiler.cppstd=gnu20 arrow/21.0.0: 'b1f5f95f1fc6b818751c64b5ffedc1646a0f96b1': compiler.cppstd=23 arrow/21.0.0: 'c126ce76a475bf287a28e1fbb6f0fe3b00d77941': compiler.cppstd=gnu23 arrow/21.0.0: '4ab9e4f4094efb3b6a7810dcd0fb53c32b512f07': compiler.cppstd=26 arrow/21.0.0: 'b31926033fb2aecef7779640cfe8e4d9a240b94a': compiler.cppstd=gnu26 hictk/2.1.4: Forced build from source Requirements arrow/21.0.0#228b4b648a5100809cd7d17451d87233:e5ce193aa93a5bceb51120e5bbe66d7b9ac453ed - Build boost/1.88.0#14ecfc01dd5a690f15e1318e56a6b78c:dc1725223e6d4655bf67314e4d4a203fb776cdd7 - Build bshoshany-thread-pool/5.0.0#d94da300363f0c35b8f41b2c5490c94d:da39a3ee5e6b4b0d3255bfef95601890afd80709#97739a2d693ef762e87869abb6ee8f74 - Download (conancenter) concurrentqueue/1.0.4#1e48e1c712bcfd892087c9c622a51502:da39a3ee5e6b4b0d3255bfef95601890afd80709#d76553f653b5b8bdf7b424d83820fea4 - Download (conancenter) eigen/3.4.0#2e192482a8acff96fe34766adca2b24c:da39a3ee5e6b4b0d3255bfef95601890afd80709#b2e7c2d86c5d1dbefc534889aa72e12c - Download (conancenter) fast_float/8.0.2#846ad0ebab16bc265c511095c3b490e9:da39a3ee5e6b4b0d3255bfef95601890afd80709#71fc9357d5e2977298ff6419eed246d0 - Download (conancenter) fmt/11.2.0#579bb2cdf4a7607621beea4eb4651e0f:da39a3ee5e6b4b0d3255bfef95601890afd80709#2d083f45b55c6afb8ec50fb67dd3c16e - Download (conancenter) hdf5/1.14.6#6f1acd01d23d00735fe97300f4d5980c:459c23bd7d939071d1d944c503840db7579be036 - Build hictk/2.1.4#99a93950b1f41becaac3cc1942c584d1:da39a3ee5e6b4b0d3255bfef95601890afd80709 - Build highfive/2.10.0#75c849a0d940b2d4dae6055915132690:da39a3ee5e6b4b0d3255bfef95601890afd80709#858d2e0aff49c826f1f2da54c7bd5435 - Download (conancenter) libdeflate/1.23#4994bea7cf7e93789da161fac8e26a53:035983102d94f5d9d7256017a5fd89651d1294c3 - Build mimalloc/1.7.6#38e7b2fbff43efcae957e6a530a62b76:7182e778f8a09f43d949188464662de5f4652380 - Build parallel-hashmap/2.0.0#82acae64ffe2693fff5fb3f9df8e1746:da39a3ee5e6b4b0d3255bfef95601890afd80709#4e55822c19c91463e20e418d07bb83c0 - Download (conancenter) re2/20230301#dfd6e2bf050eb90ddd8729cfb4c844a4:dc5068ba5fe1b6dbc8bed0d8e329d7004b0a76d9 - Build readerwriterqueue/1.0.6#aaa5ff6fac60c2aee591e9e51b063b83:da39a3ee5e6b4b0d3255bfef95601890afd80709#ecdfc46fa6d77a9ac39568d286082d22 - Download (conancenter) span-lite/0.11.0#519fd49fff711674cfed8cd17d4ed422:da39a3ee5e6b4b0d3255bfef95601890afd80709#4688663223fa1898bdb770089ef588f0 - Download (conancenter) spdlog/1.15.3#3ca0e9e6b83af4d0151e26541d140c86:da39a3ee5e6b4b0d3255bfef95601890afd80709#cd9a0d7c5d05bf77172be45346efa8c3 - Download (conancenter) xsimd/13.0.0#3e7543dc526b0f612fe291e0f198c9dc:da39a3ee5e6b4b0d3255bfef95601890afd80709#06eff08e8fe56b1741f512fb95cc3f8c - Download (conancenter) zlib/1.3.1#b8bc2603263cf7eccbd6e17e66b0ed76:035983102d94f5d9d7256017a5fd89651d1294c3 - Build zstd/1.5.7#fde461c0d847a22f16d3066774f61b11:9308e58c41ad3f278ab5d5003e836d4248b52a61 - Build Build requirements b2/5.3.3#107c15377719889654eb9a162a673975:63fead0844576fc02943e16909f08fcdddd6f44b - Build cmake/3.31.8#dde3bde00bb843687e55aea5afa0e220:63fead0844576fc02943e16909f08fcdddd6f44b#9feaf548d07371f438403f16014f443e - Download (conancenter) cmake/4.1.0#c45377ac8029e0a1738a0c40269991c3:63fead0844576fc02943e16909f08fcdddd6f44b#a2b81d87a8b8afe45d87eef0576f0f66 - Download (conancenter) ======== Installing packages ======== -------- Downloading 13 packages -------- bshoshany-thread-pool/5.0.0: Retrieving package da39a3ee5e6b4b0d3255bfef95601890afd80709 from remote 'conancenter' bshoshany-thread-pool/5.0.0: Package installed da39a3ee5e6b4b0d3255bfef95601890afd80709 bshoshany-thread-pool/5.0.0: Downloaded package revision 97739a2d693ef762e87869abb6ee8f74 cmake/3.31.8: Retrieving package 63fead0844576fc02943e16909f08fcdddd6f44b from remote 'conancenter' cmake/3.31.8: Downloading 45.1MB conan_package.tgz cmake/3.31.8: Decompressing 45.1MB conan_package.tgz cmake/3.31.8: Package installed 63fead0844576fc02943e16909f08fcdddd6f44b cmake/3.31.8: Downloaded package revision 9feaf548d07371f438403f16014f443e cmake/4.1.0: Retrieving package 63fead0844576fc02943e16909f08fcdddd6f44b from remote 'conancenter' cmake/4.1.0: Downloading 45.7MB conan_package.tgz cmake/4.1.0: Decompressing 45.7MB conan_package.tgz cmake/4.1.0: Package installed 63fead0844576fc02943e16909f08fcdddd6f44b cmake/4.1.0: Downloaded package revision a2b81d87a8b8afe45d87eef0576f0f66 concurrentqueue/1.0.4: Retrieving package da39a3ee5e6b4b0d3255bfef95601890afd80709 from remote 'conancenter' concurrentqueue/1.0.4: Package installed da39a3ee5e6b4b0d3255bfef95601890afd80709 concurrentqueue/1.0.4: Downloaded package revision d76553f653b5b8bdf7b424d83820fea4 eigen/3.4.0: Retrieving package da39a3ee5e6b4b0d3255bfef95601890afd80709 from remote 'conancenter' eigen/3.4.0: Package installed da39a3ee5e6b4b0d3255bfef95601890afd80709 eigen/3.4.0: Downloaded package revision b2e7c2d86c5d1dbefc534889aa72e12c fast_float/8.0.2: Retrieving package da39a3ee5e6b4b0d3255bfef95601890afd80709 from remote 'conancenter' fast_float/8.0.2: Package installed da39a3ee5e6b4b0d3255bfef95601890afd80709 fast_float/8.0.2: Downloaded package revision 71fc9357d5e2977298ff6419eed246d0 fmt/11.2.0: Retrieving package da39a3ee5e6b4b0d3255bfef95601890afd80709 from remote 'conancenter' fmt/11.2.0: Package installed da39a3ee5e6b4b0d3255bfef95601890afd80709 fmt/11.2.0: Downloaded package revision 2d083f45b55c6afb8ec50fb67dd3c16e parallel-hashmap/2.0.0: Retrieving package da39a3ee5e6b4b0d3255bfef95601890afd80709 from remote 'conancenter' parallel-hashmap/2.0.0: Package installed da39a3ee5e6b4b0d3255bfef95601890afd80709 parallel-hashmap/2.0.0: Downloaded package revision 4e55822c19c91463e20e418d07bb83c0 readerwriterqueue/1.0.6: Retrieving package da39a3ee5e6b4b0d3255bfef95601890afd80709 from remote 'conancenter' readerwriterqueue/1.0.6: Package installed da39a3ee5e6b4b0d3255bfef95601890afd80709 readerwriterqueue/1.0.6: Downloaded package revision ecdfc46fa6d77a9ac39568d286082d22 span-lite/0.11.0: Retrieving package da39a3ee5e6b4b0d3255bfef95601890afd80709 from remote 'conancenter' span-lite/0.11.0: Package installed da39a3ee5e6b4b0d3255bfef95601890afd80709 span-lite/0.11.0: Downloaded package revision 4688663223fa1898bdb770089ef588f0 xsimd/13.0.0: Retrieving package da39a3ee5e6b4b0d3255bfef95601890afd80709 from remote 'conancenter' xsimd/13.0.0: Package installed da39a3ee5e6b4b0d3255bfef95601890afd80709 xsimd/13.0.0: Downloaded package revision 06eff08e8fe56b1741f512fb95cc3f8c spdlog/1.15.3: Retrieving package da39a3ee5e6b4b0d3255bfef95601890afd80709 from remote 'conancenter' spdlog/1.15.3: Package installed da39a3ee5e6b4b0d3255bfef95601890afd80709 spdlog/1.15.3: Downloaded package revision cd9a0d7c5d05bf77172be45346efa8c3 highfive/2.10.0: Retrieving package da39a3ee5e6b4b0d3255bfef95601890afd80709 from remote 'conancenter' highfive/2.10.0: Package installed da39a3ee5e6b4b0d3255bfef95601890afd80709 highfive/2.10.0: Downloaded package revision 858d2e0aff49c826f1f2da54c7bd5435 b2/5.3.3: Calling source() in /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b2f33b3ec4bdb65/s/src b2/5.3.3: Uncompressing b2-5.3.3.tar.bz2 to . -------- Installing package b2/5.3.3 (1 of 23) -------- b2/5.3.3: Building from source b2/5.3.3: Package b2/5.3.3:63fead0844576fc02943e16909f08fcdddd6f44b b2/5.3.3: settings: os=Linux arch=x86_64 b2/5.3.3: Copying sources to build folder b2/5.3.3: Building your package in /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b b2/5.3.3: Generating aggregated env files b2/5.3.3: Generated aggregated env files: ['conanbuild.sh', 'conanrun.sh'] b2/5.3.3: Calling build() b2/5.3.3: Build engine.. b2/5.3.3: RUN: ./build.sh ### ### ### Using 'gcc' toolset. ### ### g++ (Debian 14.2.0-19) 14.2.0 Copyright (C) 2024 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ### ### > g++ -x c++ -std=c++11 -pthread -O2 -s -DNDEBUG bindjam.cpp builtins.cpp class.cpp command.cpp compile.cpp constants.cpp cwd.cpp debug.cpp debugger.cpp events.cpp execcmd.cpp execnt.cpp execunix.cpp filent.cpp filesys.cpp fileunix.cpp frames.cpp function.cpp glob.cpp hash.cpp hcache.cpp hdrmacro.cpp headers.cpp jam_strings.cpp jam.cpp jamgram.cpp lists.cpp make.cpp make1.cpp md5.cpp mem.cpp modules.cpp native.cpp output.cpp parse.cpp pathnt.cpp pathsys.cpp pathunix.cpp regexp.cpp rules.cpp scan.cpp search.cpp startup.cpp tasks.cpp timestamp.cpp value.cpp variable.cpp w32_getreg.cpp mod_args.cpp mod_command_db.cpp mod_db.cpp mod_jam_builtin.cpp mod_jam_class.cpp mod_jam_errors.cpp mod_jam_modules.cpp mod_order.cpp mod_path.cpp mod_property_set.cpp mod_regex.cpp mod_sequence.cpp mod_set.cpp mod_string.cpp mod_summary.cpp mod_sysinfo.cpp mod_version.cpp -o b2 b2/5.3.3: Install.. b2/5.3.3: RUN: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/src/src/engine/b2 --ignore-site-config --prefix=/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/build/output --abbreviate-paths install b2-install-layout=portable warning: No toolsets are configured. warning: Configuring default toolset "gcc". warning: If the default is wrong, your build may not work correctly. warning: Use the "toolset=xxxxx" option to override our guess. warning: For more configuration options, please consult warning: https://www.bfgroup.xyz/b2/manual/release/index.html#b2.overview.configuration ...found 473 targets... ...updating 234 targets... common.copy /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/build/output/b2 common.copy /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/build/output/.b2/options/help.jam common.copy /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/build/output/.b2/build-system.jam common.copy /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/build/output/.b2/build/virtual-target.jam common.copy /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/build/output/.b2/build/version.jam common.copy /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/build/output/.b2/build/type.jam common.copy /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/build/output/.b2/build/toolset.jam common.copy 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/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/build/output/.b2/tools/generators/__init_generators__.jam common.copy /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/build/output/.b2/tools/types/obj.jam common.copy /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/build/output/.b2/tools/types/markdown.jam common.copy /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/build/output/.b2/tools/types/man.jam common.copy /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/build/output/.b2/tools/types/lib.jam common.copy /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/build/output/.b2/tools/types/html.jam common.copy /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/build/output/.b2/tools/types/exe.jam common.copy /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/build/output/.b2/tools/types/css.jam common.copy /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/build/output/.b2/tools/types/docbook.jam common.copy /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/build/output/.b2/tools/types/cpp.jam common.copy /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/build/output/.b2/tools/types/asm.jam common.copy /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/build/output/.b2/tools/types/adoc.jam ...updated 234 targets... b2/5.3.3: Package '63fead0844576fc02943e16909f08fcdddd6f44b' built b2/5.3.3: Build folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/b/build b2/5.3.3: Generating the package b2/5.3.3: Packaging in folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/p b2/5.3.3: Calling package() b2/5.3.3: package(): Packaged 1 '.LICENSE' file: ext_nlohmann_json.hpp.LICENSE b2/5.3.3: package(): Packaged 1 '.txt' file: LICENSE.txt b2/5.3.3: package(): Packaged 1 file: b2 b2/5.3.3: package(): Packaged 215 '.jam' files b2/5.3.3: Created package revision e67e60eda99e86dfa6759b36059a1eed b2/5.3.3: Package '63fead0844576fc02943e16909f08fcdddd6f44b' created b2/5.3.3: Full package reference: b2/5.3.3#107c15377719889654eb9a162a673975:63fead0844576fc02943e16909f08fcdddd6f44b#e67e60eda99e86dfa6759b36059a1eed b2/5.3.3: Package folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/p libdeflate/1.23: Calling source() in /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/libdec6f8694fcf8a4/s/src libdeflate/1.23: Uncompressing v1.23.tar.gz to . -------- Installing package libdeflate/1.23 (9 of 23) -------- libdeflate/1.23: Building from source libdeflate/1.23: Package libdeflate/1.23:035983102d94f5d9d7256017a5fd89651d1294c3 libdeflate/1.23: settings: os=Linux arch=x86_64 compiler=clang compiler.version=19 build_type=Release libdeflate/1.23: options: fPIC=True shared=False libdeflate/1.23: Copying sources to build folder libdeflate/1.23: Building your package in /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/b libdeflate/1.23: Calling generate() libdeflate/1.23: Generators folder: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/b/build/Release/generators libdeflate/1.23: CMakeToolchain generated: conan_toolchain.cmake libdeflate/1.23: CMakeToolchain generated: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/b/build/Release/generators/CMakePresets.json libdeflate/1.23: CMakeToolchain generated: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/b/src/CMakeUserPresets.json libdeflate/1.23: Generating aggregated env files libdeflate/1.23: Generated aggregated env files: ['conanbuild.sh', 'conanrun.sh'] libdeflate/1.23: Calling build() libdeflate/1.23: Running CMake.configure() libdeflate/1.23: RUN: cmake -G "Ninja" -DCMAKE_TOOLCHAIN_FILE="generators/conan_toolchain.cmake" -DCMAKE_INSTALL_PREFIX="/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/p" -DCMAKE_POLICY_DEFAULT_CMP0091="NEW" -DCMAKE_BUILD_TYPE="Release" "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/b/src" -- Using Conan toolchain: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/b/build/Release/generators/conan_toolchain.cmake -- Conan toolchain: Setting CMAKE_POSITION_INDEPENDENT_CODE=ON (options.fPIC) -- Conan toolchain: Defining architecture flag: -m64 -- Conan toolchain: Setting BUILD_SHARED_LIBS = OFF -- The C compiler identification is Clang 19.1.7 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/clang-19 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAVE_WDECLARATION_AFTER_STATEMENT -- Performing Test HAVE_WDECLARATION_AFTER_STATEMENT - Success -- Performing Test HAVE_WIMPLICIT_FALLTHROUGH -- Performing Test HAVE_WIMPLICIT_FALLTHROUGH - Success -- Performing Test HAVE_WMISSING_FIELD_INITIALIZERS -- Performing Test HAVE_WMISSING_FIELD_INITIALIZERS - Success -- Performing Test HAVE_WMISSING_PROTOTYPES -- Performing Test HAVE_WMISSING_PROTOTYPES - Success -- Performing Test HAVE_WPEDANTIC -- Performing Test HAVE_WPEDANTIC - Success -- Performing Test HAVE_WSHADOW -- Performing Test HAVE_WSHADOW - Success -- Performing Test HAVE_WSTRICT_PROTOTYPES -- Performing Test HAVE_WSTRICT_PROTOTYPES - Success -- Performing Test HAVE_WUNDEF -- Performing Test HAVE_WUNDEF - Success -- Performing Test HAVE_WVLA -- Performing Test HAVE_WVLA - Success -- Configuring done (1.6s) -- Generating done (0.0s) -- Build files have been written to: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/b/build/Release libdeflate/1.23: Running CMake.build() libdeflate/1.23: RUN: cmake --build "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/b/build/Release" -- -j32 [1/12] Building C object CMakeFiles/libdeflate_static.dir/lib/arm/cpu_features.c.o [2/12] Building C object CMakeFiles/libdeflate_static.dir/lib/zlib_compress.c.o [3/12] Building C object CMakeFiles/libdeflate_static.dir/lib/gzip_compress.c.o [4/12] Building C object CMakeFiles/libdeflate_static.dir/lib/utils.c.o [5/12] Building C object CMakeFiles/libdeflate_static.dir/lib/zlib_decompress.c.o [6/12] Building C object CMakeFiles/libdeflate_static.dir/lib/gzip_decompress.c.o [7/12] Building C object CMakeFiles/libdeflate_static.dir/lib/x86/cpu_features.c.o [8/12] Building C object CMakeFiles/libdeflate_static.dir/lib/adler32.c.o [9/12] Building C object CMakeFiles/libdeflate_static.dir/lib/crc32.c.o [10/12] Building C object CMakeFiles/libdeflate_static.dir/lib/deflate_decompress.c.o [11/12] Building C object CMakeFiles/libdeflate_static.dir/lib/deflate_compress.c.o [12/12] Linking C static library libdeflate.a libdeflate/1.23: Package '035983102d94f5d9d7256017a5fd89651d1294c3' built libdeflate/1.23: Build folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/b/build/Release libdeflate/1.23: Generating the package libdeflate/1.23: Packaging in folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/p libdeflate/1.23: Calling package() libdeflate/1.23: Running CMake.install() libdeflate/1.23: RUN: cmake --install "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/b/build/Release" --prefix "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/p" -- Install configuration: "Release" -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/p/lib/libdeflate.a -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/p/include/libdeflate.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/p/lib/pkgconfig/libdeflate.pc -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/p/lib/cmake/libdeflate/libdeflate-targets.cmake -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/p/lib/cmake/libdeflate/libdeflate-targets-release.cmake -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/p/lib/cmake/libdeflate/libdeflate-config.cmake -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/p/lib/cmake/libdeflate/libdeflate-config-version.cmake libdeflate/1.23: package(): Packaged 1 '.h' file: libdeflate.h libdeflate/1.23: package(): Packaged 1 file: COPYING libdeflate/1.23: package(): Packaged 1 '.a' file: libdeflate.a libdeflate/1.23: Created package revision b63d7735fae5f4112ed6a7aaf7fbe32f libdeflate/1.23: Package '035983102d94f5d9d7256017a5fd89651d1294c3' created libdeflate/1.23: Full package reference: libdeflate/1.23#4994bea7cf7e93789da161fac8e26a53:035983102d94f5d9d7256017a5fd89651d1294c3#b63d7735fae5f4112ed6a7aaf7fbe32f libdeflate/1.23: Package folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/p re2/20230301: Calling source() in /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/re21ed21f94112fb/s/src re2/20230301: Uncompressing 2023-03-01.tar.gz to . -------- Installing package re2/20230301 (11 of 23) -------- re2/20230301: Building from source re2/20230301: Package re2/20230301:dc5068ba5fe1b6dbc8bed0d8e329d7004b0a76d9 re2/20230301: settings: os=Linux arch=x86_64 compiler=clang compiler.cppstd=17 compiler.libcxx=libstdc++11 compiler.version=19 build_type=Release re2/20230301: options: fPIC=True shared=False with_icu=False re2/20230301: Copying sources to build folder re2/20230301: Building your package in /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b re2/20230301: Calling generate() re2/20230301: Generators folder: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/build/Release/generators re2/20230301: CMakeToolchain generated: conan_toolchain.cmake re2/20230301: CMakeToolchain generated: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/build/Release/generators/CMakePresets.json re2/20230301: CMakeToolchain generated: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/CMakeUserPresets.json re2/20230301: Generating aggregated env files re2/20230301: Generated aggregated env files: ['conanbuild.sh', 'conanrun.sh'] re2/20230301: Calling build() re2/20230301: Running CMake.configure() re2/20230301: RUN: cmake -G "Ninja" -DCMAKE_TOOLCHAIN_FILE="generators/conan_toolchain.cmake" -DCMAKE_INSTALL_PREFIX="/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/p" -DCMAKE_POLICY_DEFAULT_CMP0091="NEW" -DCMAKE_BUILD_TYPE="Release" "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src" -- Using Conan toolchain: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/build/Release/generators/conan_toolchain.cmake -- Conan toolchain: Setting CMAKE_POSITION_INDEPENDENT_CODE=ON (options.fPIC) -- Conan toolchain: Defining architecture flag: -m64 -- Conan toolchain: Defining libcxx as C++ flags: -stdlib=libstdc++ -- Conan toolchain: C++ Standard 17 with extensions OFF -- Conan toolchain: Setting BUILD_SHARED_LIBS = OFF -- The CXX compiler identification is Clang 19.1.7 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/clang++-19 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done (0.7s) -- Generating done (0.0s) -- Build files have been written to: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/build/Release re2/20230301: Running CMake.build() re2/20230301: RUN: cmake --build "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/build/Release" -- -j32 [1/24] Building CXX object CMakeFiles/re2.dir/re2/perl_groups.cc.o [2/24] Building CXX object CMakeFiles/re2.dir/re2/unicode_casefold.cc.o [3/24] Building CXX object CMakeFiles/re2.dir/util/rune.cc.o [4/24] Building CXX object CMakeFiles/re2.dir/re2/unicode_groups.cc.o [5/24] Building CXX object CMakeFiles/re2.dir/re2/bitmap256.cc.o [6/24] Building CXX object CMakeFiles/re2.dir/re2/stringpiece.cc.o [7/24] Building CXX object CMakeFiles/re2.dir/util/strutil.cc.o [8/24] Building CXX object CMakeFiles/re2.dir/re2/filtered_re2.cc.o [9/24] Building CXX object CMakeFiles/re2.dir/re2/tostring.cc.o In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/tostring.cc:15: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 586 | struct { // CharClass | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 586 | struct { // CharClass | ^ In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/tostring.cc:16: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/walker-inl.h:140:39: warning: ISO C++ requires the name after '::~' to be found in the same scope as the name before '::~' [-Wdtor-name] 140 | template Regexp::Walker::~Walker() { | ~~~~~~~~~~~~~~~~~^~ | ::Walker 9 warnings generated. [10/24] Building CXX object CMakeFiles/re2.dir/re2/mimics_pcre.cc.o In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/mimics_pcre.cc:27: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 586 | struct { // CharClass | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 586 | struct { // CharClass | ^ In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/mimics_pcre.cc:28: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/walker-inl.h:140:39: warning: ISO C++ requires the name after '::~' to be found in the same scope as the name before '::~' [-Wdtor-name] 140 | template Regexp::Walker::~Walker() { | ~~~~~~~~~~~~~~~~~^~ | ::Walker 9 warnings generated. [11/24] Building CXX object CMakeFiles/re2.dir/re2/onepass.cc.o In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/onepass.cc:65: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:148:7: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 148 | struct { // opcode == kInstByteRange | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:148:7: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:426:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 426 | struct { | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:426:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/onepass.cc:148:12: warning: flexible array members are a C99 feature [-Wc99-extensions] 148 | uint32_t action[]; | ^ 5 warnings generated. [12/24] Building CXX object CMakeFiles/re2.dir/re2/simplify.cc.o In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/simplify.cc:15: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 586 | struct { // CharClass | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 586 | struct { // CharClass | ^ In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/simplify.cc:16: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/walker-inl.h:140:39: warning: ISO C++ requires the name after '::~' to be found in the same scope as the name before '::~' [-Wdtor-name] 140 | template Regexp::Walker::~Walker() { | ~~~~~~~~~~~~~~~~~^~ | ::Walker 9 warnings generated. [13/24] Building CXX object CMakeFiles/re2.dir/re2/bitstate.cc.o In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/bitstate.cc:28: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:148:7: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 148 | struct { // opcode == kInstByteRange | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:148:7: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:426:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 426 | struct { | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:426:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/bitstate.cc:29: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 586 | struct { // CharClass | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 586 | struct { // CharClass | ^ 12 warnings generated. [14/24] Building CXX object CMakeFiles/re2.dir/re2/prefilter.cc.o In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prefilter.cc:19: In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/walker-inl.h:19: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 586 | struct { // CharClass | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 586 | struct { // CharClass | ^ In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prefilter.cc:19: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/walker-inl.h:140:39: warning: ISO C++ requires the name after '::~' to be found in the same scope as the name before '::~' [-Wdtor-name] 140 | template Regexp::Walker::~Walker() { | ~~~~~~~~~~~~~~~~~^~ | ::Walker 9 warnings generated. [15/24] Building CXX object CMakeFiles/re2.dir/re2/nfa.cc.o In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/nfa.cc:38: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:148:7: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 148 | struct { // opcode == kInstByteRange | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:148:7: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:426:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 426 | struct { | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:426:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/nfa.cc:39: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 586 | struct { // CharClass | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 586 | struct { // CharClass | ^ 12 warnings generated. [16/24] Building CXX object CMakeFiles/re2.dir/re2/set.cc.o In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/set.cc:15: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:148:7: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 148 | struct { // opcode == kInstByteRange | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:148:7: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:426:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 426 | struct { | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:426:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/set.cc:17: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 586 | struct { // CharClass | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 586 | struct { // CharClass | ^ 12 warnings generated. [17/24] Building CXX object CMakeFiles/re2.dir/re2/re2.cc.o In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/re2.cc:33: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:148:7: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 148 | struct { // opcode == kInstByteRange | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:148:7: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:426:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 426 | struct { | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:426:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/re2.cc:34: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 586 | struct { // CharClass | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 586 | struct { // CharClass | ^ 12 warnings generated. [18/24] Building CXX object CMakeFiles/re2.dir/re2/compile.cc.o In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/compile.cc:19: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:148:7: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 148 | struct { // opcode == kInstByteRange | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:148:7: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:426:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 426 | struct { | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:426:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/compile.cc:21: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 586 | struct { // CharClass | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 586 | struct { // CharClass | ^ In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/compile.cc:22: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/walker-inl.h:140:39: warning: ISO C++ requires the name after '::~' to be found in the same scope as the name before '::~' [-Wdtor-name] 140 | template Regexp::Walker::~Walker() { | ~~~~~~~~~~~~~~~~~^~ | ::Walker 13 warnings generated. [19/24] Building CXX object CMakeFiles/re2.dir/re2/parse.cc.o In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/parse.cc:33: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 586 | struct { // CharClass | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 586 | struct { // CharClass | ^ In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/parse.cc:37: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/walker-inl.h:140:39: warning: ISO C++ requires the name after '::~' to be found in the same scope as the name before '::~' [-Wdtor-name] 140 | template Regexp::Walker::~Walker() { | ~~~~~~~~~~~~~~~~~^~ | ::Walker 9 warnings generated. [20/24] Building CXX object CMakeFiles/re2.dir/re2/regexp.cc.o In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.cc:8: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 586 | struct { // CharClass | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:574:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 574 | struct { // Repeat | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:578:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 578 | struct { // Capture | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:582:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 582 | struct { // LiteralString | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.h:586:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 586 | struct { // CharClass | ^ In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/regexp.cc:25: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/walker-inl.h:140:39: warning: ISO C++ requires the name after '::~' to be found in the same scope as the name before '::~' [-Wdtor-name] 140 | template Regexp::Walker::~Walker() { | ~~~~~~~~~~~~~~~~~^~ | ::Walker 9 warnings generated. [21/24] Building CXX object CMakeFiles/re2.dir/re2/prog.cc.o In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.cc:8: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:148:7: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 148 | struct { // opcode == kInstByteRange | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:148:7: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:426:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 426 | struct { | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:426:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 4 warnings generated. [22/24] Building CXX object CMakeFiles/re2.dir/re2/prefilter_tree.cc.o [23/24] Building CXX object CMakeFiles/re2.dir/re2/dfa.cc.o In file included from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/dfa.cc:44: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:148:7: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 148 | struct { // opcode == kInstByteRange | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:148:7: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:426:5: warning: anonymous structs are a GNU extension [-Wgnu-anonymous-struct] 426 | struct { | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/prog.h:426:5: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/src/re2/dfa.cc:128:25: warning: flexible array members are a C99 feature [-Wc99-extensions] 128 | std::atomic next_[]; // Outgoing arrows from State, | ^ 5 warnings generated. [24/24] Linking CXX static library libre2.a re2/20230301: Package 'dc5068ba5fe1b6dbc8bed0d8e329d7004b0a76d9' built re2/20230301: Build folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/build/Release re2/20230301: Generating the package re2/20230301: Packaging in folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/p re2/20230301: Calling package() re2/20230301: Running CMake.install() re2/20230301: RUN: cmake --install "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/b/build/Release" --prefix "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/p" -- Install configuration: "Release" -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/p/lib/libre2.a -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/p/include/re2/filtered_re2.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/p/include/re2/re2.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/p/include/re2/set.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/p/include/re2/stringpiece.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/p/lib/cmake/re2/re2Targets.cmake -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/p/lib/cmake/re2/re2Targets-release.cmake -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/p/lib/cmake/re2/re2Config.cmake -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/p/lib/cmake/re2/re2ConfigVersion.cmake -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/p/lib/pkgconfig/re2.pc re2/20230301: package(): Packaged 4 '.h' files: stringpiece.h, set.h, filtered_re2.h, re2.h re2/20230301: package(): Packaged 1 file: LICENSE re2/20230301: package(): Packaged 1 '.a' file: libre2.a re2/20230301: Created package revision a4492afd194affa67168da42eaaa29de re2/20230301: Package 'dc5068ba5fe1b6dbc8bed0d8e329d7004b0a76d9' created re2/20230301: Full package reference: re2/20230301#dfd6e2bf050eb90ddd8729cfb4c844a4:dc5068ba5fe1b6dbc8bed0d8e329d7004b0a76d9#a4492afd194affa67168da42eaaa29de re2/20230301: Package folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/p zlib/1.3.1: Sources downloaded from 'conancenter' zlib/1.3.1: Calling source() in /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/zlib204752602052d/s/src zlib/1.3.1: Uncompressing zlib-1.3.1.tar.gz to /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/zlib204752602052d/s/src -------- Installing package zlib/1.3.1 (15 of 23) -------- zlib/1.3.1: Building from source zlib/1.3.1: Package zlib/1.3.1:035983102d94f5d9d7256017a5fd89651d1294c3 zlib/1.3.1: settings: os=Linux arch=x86_64 compiler=clang compiler.version=19 build_type=Release zlib/1.3.1: options: fPIC=True shared=False zlib/1.3.1: Copying sources to build folder zlib/1.3.1: Building your package in /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zlibf5aa86c47eb13/b zlib/1.3.1: Calling generate() zlib/1.3.1: Generators folder: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zlibf5aa86c47eb13/b/build/Release/generators zlib/1.3.1: CMakeToolchain generated: conan_toolchain.cmake zlib/1.3.1: CMakeToolchain generated: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zlibf5aa86c47eb13/b/build/Release/generators/CMakePresets.json zlib/1.3.1: CMakeToolchain generated: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zlibf5aa86c47eb13/b/src/CMakeUserPresets.json zlib/1.3.1: Generating aggregated env files zlib/1.3.1: Generated aggregated env files: ['conanbuild.sh', 'conanrun.sh'] zlib/1.3.1: Calling build() zlib/1.3.1: Apply patch (conan): separate static/shared builds, disable debug suffix zlib/1.3.1: Running CMake.configure() zlib/1.3.1: RUN: cmake -G "Ninja" -DCMAKE_TOOLCHAIN_FILE="generators/conan_toolchain.cmake" -DCMAKE_INSTALL_PREFIX="/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zlibf5aa86c47eb13/p" -DCMAKE_POLICY_DEFAULT_CMP0091="NEW" -DCMAKE_BUILD_TYPE="Release" "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zlibf5aa86c47eb13/b/src" -- Using Conan toolchain: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zlibf5aa86c47eb13/b/build/Release/generators/conan_toolchain.cmake -- Conan toolchain: Setting CMAKE_POSITION_INDEPENDENT_CODE=ON (options.fPIC) -- Conan toolchain: Defining architecture flag: -m64 -- Conan toolchain: Setting BUILD_SHARED_LIBS = OFF -- The C compiler identification is Clang 19.1.7 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/clang-19 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of off64_t -- Check size of off64_t - done -- Looking for fseeko -- Looking for fseeko - found -- Looking for unistd.h -- Looking for unistd.h - found -- Renaming -- /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zlibf5aa86c47eb13/b/src/zconf.h -- to 'zconf.h.included' because this file is included with zlib -- but CMake generates it automatically in the build directory. -- Configuring done (1.3s) -- Generating done (0.0s) -- Build files have been written to: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zlibf5aa86c47eb13/b/build/Release zlib/1.3.1: Running CMake.build() zlib/1.3.1: RUN: cmake --build "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zlibf5aa86c47eb13/b/build/Release" -- -j32 [1/16] Building C object CMakeFiles/zlib.dir/uncompr.c.o [2/16] Building C object CMakeFiles/zlib.dir/zutil.c.o [3/16] Building C object CMakeFiles/zlib.dir/compress.c.o [4/16] Building C object CMakeFiles/zlib.dir/gzclose.c.o [5/16] Building C object CMakeFiles/zlib.dir/adler32.c.o [6/16] Building C object CMakeFiles/zlib.dir/inftrees.c.o [7/16] Building C object CMakeFiles/zlib.dir/gzlib.c.o [8/16] Building C object CMakeFiles/zlib.dir/gzwrite.c.o [9/16] Building C object CMakeFiles/zlib.dir/inffast.c.o [10/16] Building C object CMakeFiles/zlib.dir/gzread.c.o [11/16] Building C object CMakeFiles/zlib.dir/crc32.c.o [12/16] Building C object CMakeFiles/zlib.dir/infback.c.o [13/16] Building C object CMakeFiles/zlib.dir/trees.c.o [14/16] Building C object CMakeFiles/zlib.dir/deflate.c.o [15/16] Building C object CMakeFiles/zlib.dir/inflate.c.o [16/16] Linking C static library libz.a zlib/1.3.1: Package '035983102d94f5d9d7256017a5fd89651d1294c3' built zlib/1.3.1: Build folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zlibf5aa86c47eb13/b/build/Release zlib/1.3.1: Generating the package zlib/1.3.1: Packaging in folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zlibf5aa86c47eb13/p zlib/1.3.1: Calling package() zlib/1.3.1: Running CMake.install() zlib/1.3.1: RUN: cmake --install "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zlibf5aa86c47eb13/b/build/Release" --prefix "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zlibf5aa86c47eb13/p" -- Install configuration: "Release" -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zlibf5aa86c47eb13/p/lib/libz.a -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zlibf5aa86c47eb13/p/include/zconf.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zlibf5aa86c47eb13/p/include/zlib.h zlib/1.3.1: package(): Packaged 2 '.h' files: zconf.h, zlib.h zlib/1.3.1: package(): Packaged 1 file: LICENSE zlib/1.3.1: package(): Packaged 1 '.a' file: libz.a zlib/1.3.1: Created package revision 75d20e646ea239177503cdaa59cf1637 zlib/1.3.1: Package '035983102d94f5d9d7256017a5fd89651d1294c3' created zlib/1.3.1: Full package reference: zlib/1.3.1#b8bc2603263cf7eccbd6e17e66b0ed76:035983102d94f5d9d7256017a5fd89651d1294c3#75d20e646ea239177503cdaa59cf1637 zlib/1.3.1: Package folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zlibf5aa86c47eb13/p zstd/1.5.7: Sources downloaded from 'conancenter' zstd/1.5.7: Calling source() in /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/zstdeed99db05b3ea/s/src zstd/1.5.7: Uncompressing zstd-1.5.7.tar.gz to . -------- Installing package zstd/1.5.7 (16 of 23) -------- zstd/1.5.7: Building from source zstd/1.5.7: Package zstd/1.5.7:9308e58c41ad3f278ab5d5003e836d4248b52a61 zstd/1.5.7: settings: os=Linux arch=x86_64 compiler=clang compiler.version=19 build_type=Release zstd/1.5.7: options: build_programs=False fPIC=True shared=False threading=True zstd/1.5.7: Copying sources to build folder zstd/1.5.7: Building your package in /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b zstd/1.5.7: Calling generate() zstd/1.5.7: Generators folder: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/build/Release/generators zstd/1.5.7: CMakeToolchain generated: conan_toolchain.cmake zstd/1.5.7: CMakeToolchain generated: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/build/Release/generators/CMakePresets.json zstd/1.5.7: Generating aggregated env files zstd/1.5.7: Generated aggregated env files: ['conanbuild.sh', 'conanrun.sh'] zstd/1.5.7: Calling build() zstd/1.5.7: apply_conandata_patches(): No patches defined in conandata zstd/1.5.7: Running CMake.configure() zstd/1.5.7: RUN: cmake -G "Ninja" -DCMAKE_TOOLCHAIN_FILE="generators/conan_toolchain.cmake" -DCMAKE_INSTALL_PREFIX="/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/p" -DCMAKE_POLICY_DEFAULT_CMP0091="NEW" -DCMAKE_BUILD_TYPE="Release" "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/build/cmake" -- Using Conan toolchain: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/build/Release/generators/conan_toolchain.cmake -- Conan toolchain: Setting CMAKE_POSITION_INDEPENDENT_CODE=ON (options.fPIC) -- Conan toolchain: Defining architecture flag: -m64 -- Conan toolchain: Setting BUILD_SHARED_LIBS = OFF -- The C compiler identification is Clang 19.1.7 -- The ASM compiler identification is Clang with GNU-like command-line -- Found assembler: /usr/bin/clang-19 -- The CXX compiler identification is Clang 19.1.7 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/clang-19 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/clang++-19 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- ZSTD VERSION: 1.5.7 -- Performing Test C_FLAG_WALL -- Performing Test C_FLAG_WALL - Success -- Performing Test CXX_FLAG_WALL -- Performing Test CXX_FLAG_WALL - Success -- Performing Test C_FLAG_WEXTRA -- Performing Test C_FLAG_WEXTRA - Success -- Performing Test CXX_FLAG_WEXTRA -- Performing Test CXX_FLAG_WEXTRA - Success -- Performing Test C_FLAG_WUNDEF -- Performing Test C_FLAG_WUNDEF - Success -- Performing Test CXX_FLAG_WUNDEF -- Performing Test CXX_FLAG_WUNDEF - Success -- Performing Test C_FLAG_WSHADOW -- Performing Test C_FLAG_WSHADOW - Success -- Performing Test CXX_FLAG_WSHADOW -- Performing Test CXX_FLAG_WSHADOW - Success -- Performing Test C_FLAG_WCAST_ALIGN -- Performing Test C_FLAG_WCAST_ALIGN - Success -- Performing Test CXX_FLAG_WCAST_ALIGN -- Performing Test CXX_FLAG_WCAST_ALIGN - Success -- Performing Test C_FLAG_WCAST_QUAL -- Performing Test C_FLAG_WCAST_QUAL - Success -- Performing Test CXX_FLAG_WCAST_QUAL -- Performing Test CXX_FLAG_WCAST_QUAL - Success -- Performing Test C_FLAG_WSTRICT_PROTOTYPES -- Performing Test C_FLAG_WSTRICT_PROTOTYPES - Success -- Performing Test LD_FLAG_WL_Z_NOEXECSTACK -- Performing Test LD_FLAG_WL_Z_NOEXECSTACK - Success -- Performing Test C_FLAG_QUNUSED_ARGUMENTS -- Performing Test C_FLAG_QUNUSED_ARGUMENTS - Success -- Performing Test CXX_FLAG_QUNUSED_ARGUMENTS -- Performing Test CXX_FLAG_QUNUSED_ARGUMENTS - Success -- Performing Test C_FLAG_WA_NOEXECSTACK -- Performing Test C_FLAG_WA_NOEXECSTACK - Success -- Performing Test CXX_FLAG_WA_NOEXECSTACK -- Performing Test CXX_FLAG_WA_NOEXECSTACK - Success -- CMAKE_INSTALL_PREFIX: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/p -- CMAKE_INSTALL_LIBDIR: lib -- ZSTD_LEGACY_SUPPORT defined! -- ZSTD_MULTITHREAD_SUPPORT is enabled -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done (3.9s) -- Generating done (0.0s) -- Build files have been written to: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/build/Release zstd/1.5.7: Running CMake.build() zstd/1.5.7: RUN: cmake --build "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/build/Release" -- -j32 [1/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/common/debug.c.o [2/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/common/threading.c.o [3/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/common/error_private.c.o [4/39] Building ASM object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/decompress/huf_decompress_amd64.S.o [5/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/common/zstd_common.c.o [6/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/common/pool.c.o [7/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/decompress/zstd_ddict.c.o [8/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/compress/zstd_preSplit.c.o [9/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/compress/zstd_compress_literals.c.o [10/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/compress/hist.c.o [11/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/common/xxhash.c.o [12/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/common/entropy_common.c.o [13/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/compress/fse_compress.c.o [14/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/dictBuilder/fastcover.c.o [15/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/compress/zstd_compress_sequences.c.o [16/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/compress/zstd_compress_superblock.c.o [17/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/dictBuilder/cover.c.o [18/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/common/fse_decompress.c.o [19/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/compress/zstd_ldm.c.o [20/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/compress/zstdmt_compress.c.o [21/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/dictBuilder/zdict.c.o [22/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/decompress/zstd_decompress.c.o [23/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/legacy/zstd_v01.c.o [24/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/legacy/zstd_v03.c.o [25/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/legacy/zstd_v06.c.o [26/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/legacy/zstd_v02.c.o [27/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/compress/huf_compress.c.o [28/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/legacy/zstd_v04.c.o [29/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/legacy/zstd_v05.c.o [30/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/dictBuilder/divsufsort.c.o [31/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/legacy/zstd_v07.c.o [32/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/compress/zstd_opt.c.o [33/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/compress/zstd_fast.c.o [34/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/compress/zstd_double_fast.c.o [35/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/decompress/zstd_decompress_block.c.o [36/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/decompress/huf_decompress.c.o [37/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/compress/zstd_compress.c.o [38/39] Building C object lib/CMakeFiles/libzstd_static.dir/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/src/lib/compress/zstd_lazy.c.o [39/39] Linking C static library lib/libzstd.a zstd/1.5.7: Package '9308e58c41ad3f278ab5d5003e836d4248b52a61' built zstd/1.5.7: Build folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/build/Release zstd/1.5.7: Generating the package zstd/1.5.7: Packaging in folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/p zstd/1.5.7: Calling package() zstd/1.5.7: Running CMake.install() zstd/1.5.7: RUN: cmake --install "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/b/build/Release" --prefix "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/p" -- Install configuration: "Release" -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/p/lib/cmake/zstd/zstdTargets.cmake -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/p/lib/cmake/zstd/zstdTargets-release.cmake -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/p/lib/cmake/zstd/zstdConfig.cmake -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/p/lib/cmake/zstd/zstdConfigVersion.cmake -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/p/lib/pkgconfig/libzstd.pc -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/p/include/zdict.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/p/include/zstd.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/p/include/zstd_errors.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/p/lib/libzstd.a zstd/1.5.7: package(): Packaged 3 '.h' files: zstd.h, zstd_errors.h, zdict.h zstd/1.5.7: package(): Packaged 1 file: LICENSE zstd/1.5.7: package(): Packaged 1 '.a' file: libzstd.a zstd/1.5.7: Created package revision 278588a674dd1de616622652b7216cee zstd/1.5.7: Package '9308e58c41ad3f278ab5d5003e836d4248b52a61' created zstd/1.5.7: Full package reference: zstd/1.5.7#fde461c0d847a22f16d3066774f61b11:9308e58c41ad3f278ab5d5003e836d4248b52a61#278588a674dd1de616622652b7216cee zstd/1.5.7: Package folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/p boost/1.88.0: Sources downloaded from 'conancenter' boost/1.88.0: Calling source() in /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/boostc5fe8bb062755/s/src boost/1.88.0: Downloading 143.9MB boost_1_88_0.tar.bz2 boost/1.88.0: Uncompressing boost_1_88_0.tar.bz2 to /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/boostc5fe8bb062755/s/src boost/1.88.0: Apply patch (conan): Optional flag to specify iconv from either libc of libiconv -------- Installing package boost/1.88.0 (17 of 23) -------- boost/1.88.0: Building from source boost/1.88.0: Package boost/1.88.0:dc1725223e6d4655bf67314e4d4a203fb776cdd7 boost/1.88.0: settings: os=Linux arch=x86_64 compiler=clang compiler.cppstd=17 compiler.libcxx=libstdc++11 compiler.version=19 build_type=Release boost/1.88.0: options: asio_no_deprecated=True buildid=None bzip2=False diagnostic_definitions=False error_code_header_only=False extra_b2_flags=None fPIC=True filesystem_no_deprecated=True filesystem_use_std_fs=False header_only=False layout=system lzma=False magic_autolink=False multithreading=True namespace=boost namespace_alias=False segmented_stacks=False shared=False system_no_deprecated=True system_use_utf8=False visibility=hidden without_atomic=False without_charconv=True without_chrono=True without_cobalt=True without_container=True without_context=False without_contract=True without_coroutine=True without_date_time=False without_exception=True without_fiber=True without_filesystem=False without_graph=True without_graph_parallel=True without_iostreams=True without_json=True without_locale=True without_log=True without_math=True without_mpi=True without_nowide=True without_process=True without_program_options=True without_python=True without_random=True without_regex=True without_serialization=True without_stacktrace=True without_system=False without_test=True without_thread=True without_timer=True without_type_erasure=True without_url=True without_wave=True zlib=False zstd=False boost/1.88.0: Building your package in /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/boostc18f657d24ac6/b boost/1.88.0: Calling generate() boost/1.88.0: Generators folder: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/boostc18f657d24ac6/b/build-release/conan boost/1.88.0: Generating aggregated env files boost/1.88.0: Generated aggregated env files: ['conanbuild.sh', 'conanrun.sh'] boost/1.88.0: Calling build() boost/1.88.0: WARN: replace_in_file didn't find pattern '/* thread_local */' in '/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/boostc5fe8bb062755/s/src/boost/stacktrace/detail/libbacktrace_impls.hpp' file. boost/1.88.0: WARN: replace_in_file didn't find pattern '/* static __thread */' in '/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/boostc5fe8bb062755/s/src/boost/stacktrace/detail/libbacktrace_impls.hpp' file. boost/1.88.0: WARN: replace_in_file didn't find pattern 'local generic-os = [ set.difference $(all-os) : aix darwin vxworks solaris osf hpux ] ;' in '/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/boostc5fe8bb062755/s/src/tools/build/src/tools/gcc.jam' file. boost/1.88.0: WARN: replace_in_file didn't find pattern 'local no-threading = android beos haiku sgi darwin vxworks ;' in '/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/boostc5fe8bb062755/s/src/tools/build/src/tools/gcc.jam' file. boost/1.88.0: WARN: Patching user-config.jam boost/1.88.0: WARN: using "clang" : : "/usr/bin/clang++-19" : ; boost/1.88.0: WARN: b2 -q target-os=linux architecture=x86 address-model=64 binary-format=elf abi=sysv --layout=system --user-config=/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/boostc5fe8bb062755/s/src/tools/build/user-config.jam -sNO_ZLIB=1 -sNO_BZIP2=1 -sNO_LZMA=1 -sNO_ZSTD=1 boost.locale.icu=off --disable-icu boost.locale.iconv=off --disable-iconv threading=multi visibility=hidden link=static variant=release --with-atomic --with-context --with-date_time --with-filesystem --with-system toolset=clang cxxstd=17 define=_GLIBCXX_USE_CXX11_ABI=1 define=BOOST_SYSTEM_NO_DEPRECATED=1 define=BOOST_ASIO_NO_DEPRECATED=1 define=BOOST_FILESYSTEM_NO_DEPRECATED=1 pch=on linkflags="-stdlib=libstdc++" cxxflags="-fPIC -stdlib=libstdc++" install --prefix=/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/boostc18f657d24ac6/p -j32 --abbreviate-paths -d0 --debug-configuration --build-dir="/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/boostc18f657d24ac6/b/build-release" boost/1.88.0: RUN: b2 -q target-os=linux architecture=x86 address-model=64 binary-format=elf abi=sysv --layout=system --user-config=/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/boostc5fe8bb062755/s/src/tools/build/user-config.jam -sNO_ZLIB=1 -sNO_BZIP2=1 -sNO_LZMA=1 -sNO_ZSTD=1 boost.locale.icu=off --disable-icu boost.locale.iconv=off --disable-iconv threading=multi visibility=hidden link=static variant=release --with-atomic --with-context --with-date_time --with-filesystem --with-system toolset=clang cxxstd=17 define=_GLIBCXX_USE_CXX11_ABI=1 define=BOOST_SYSTEM_NO_DEPRECATED=1 define=BOOST_ASIO_NO_DEPRECATED=1 define=BOOST_FILESYSTEM_NO_DEPRECATED=1 pch=on linkflags="-stdlib=libstdc++" cxxflags="-fPIC -stdlib=libstdc++" install --prefix=/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/boostc18f657d24ac6/p -j32 --abbreviate-paths -d0 --debug-configuration --build-dir="/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/boostc18f657d24ac6/b/build-release" notice: found boost-build.jam at /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/boostc5fe8bb062755/s/src/boost-build.jam notice: loading B2 from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/p/bin/.b2/build-system.jam notice: Searching '/etc' '/home/hornik' '/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/p/bin/.b2/util' '/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/p/bin/.b2/tools' '/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/p/bin/.b2/options' '/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/p/bin/.b2/contrib' '/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/p/bin/.b2/build' '/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/p/bin/.b2' for site-config configuration file 'site-config.jam'. notice: Configuration file 'site-config.jam' not found in '/etc' '/home/hornik' '/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/p/bin/.b2/util' '/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/p/bin/.b2/tools' '/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/p/bin/.b2/options' '/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/p/bin/.b2/contrib' '/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/p/bin/.b2/build' '/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/b25828fa25444ba/p/bin/.b2'. notice: Loading explicitly specified user configuration file: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/boostc5fe8bb062755/s/src/tools/build/user-config.jam notice: Searching '/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/boostc5fe8bb062755/s/src/tools/build' for user-config configuration file 'user-config.jam'. notice: Loading user-config configuration file 'user-config.jam' from '/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/boostc5fe8bb062755/s/src/tools/build'. notice: will use '/usr/bin/clang++-19' for clang-linux, condition clang-linux-19 warning: toolset clang-linux initialization: can not find tool windres warning: initialized from /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/boostc5fe8bb062755/s/src/tools/build/user-config.jam:3 notice: using rc compiler :: clang-linux-19 :: as Performing configuration checks - default address-model : 64-bit [1] - default architecture : x86 [1] - compiler supports SSE2 : yes [2] - compiler supports SSE4.1 : yes [2] - cxx11_static_assert : yes [2] - BOOST_ARCH_WORD_BITS == 0.0.16 : no [2] - BOOST_ARCH_WORD_BITS == 0.0.32 : no [2] - BOOST_ARCH_WORD_BITS == 0.0.64 : yes [2] - BOOST_ARCH_X86 : yes [2] - BOOST_ARCH_IA64 : no [2] - BOOST_ARCH_SPARC : no [2] - BOOST_ARCH_LOONGARCH : no [2] - BOOST_ARCH_MIPS : no [2] - BOOST_ARCH_PARISC : no [2] - BOOST_ARCH_ARM : no [2] - BOOST_ARCH_RISCV : no [2] - BOOST_ARCH_PPC : no [2] - BOOST_ARCH_SYS390 : no [2] - has std::atomic_ref : no [2] - has statx : yes [2] - cxx11_rvalue_references : yes [2] - cxx11_scoped_enums : yes [2] - cxx11_noexcept : yes [2] - cxx11_nullptr : yes [2] - cxx11_defaulted_functions : yes [2] - cxx11_defaulted_moves : yes [2] - cxx11_deleted_functions : yes [2] - cxx11_function_template_default_args : yes [2] - cxx11_final : yes [2] - cxx11_override : yes [2] - has init_priority attribute : yes [2] - has stat::st_blksize : yes [2] - has stat::st_mtim : yes [2] - has stat::st_mtimensec : no [2] - has stat::st_mtimespec : no [2] - has stat::st_birthtim : no [2] - has stat::st_birthtimensec : no [2] - has stat::st_birthtimespec : no [2] - has fdopendir(O_NOFOLLOW) : yes [2] - has dirent::d_type : yes [2] - has POSIX *at APIs : yes [2] - has fallocate : yes [2] [1] clng-19 [2] clng-lnx-19/rls/x86_6/bst.l-off/bst.l-off/cxstd-17-iso/lnk-sttc/thrd-mlt/vsblt-hdn Component configuration: - contract : not building - date_time : building - exception : not building - graph : not building - graph_parallel : not building - headers : not building - log : not building - nowide : not building - program_options : not building - regex : not building - serialization : not building - test : not building - thread : not building - type_erasure : not building - yap : not building - winapi : not building - wave : not building - variant2 : not building - variant : not building - uuid : not building - url : not building - unordered : not building - type_index : not building - tuple : not building - tokenizer : not building - timer : not building - throw_exception : not building - system : building - stl_interfaces : not building - stacktrace : not building - spirit : not building - sort : not building - smart_ptr : not building - signals2 : not building - scope : not building - redis : not building - rational : not building - ratio : not building - random : not building - python : not building - ptr_container : not building - property_map : not building - process : not building - predef : not building - pool : not building - poly_collection : not building - pfr : not building - parameter : not building - outcome : not building - optional : not building - mysql : not building - multi_index : not building - msm : not building - mqtt5 : not building - mpl : not building - mpi : not building - mp11 : not building - move : not building - math : not building - logic : not building - lockfree : not building - locale : not building - lexical_cast : not building - lambda2 : not building - json : not building - iterator : not building - iostreams : not building - intrusive : not building - interprocess : not building - integer : not building - heap : not building - hana : not building - geometry : not building - function_types : not building - function : not building - format : not building - flyweight : not building - filesystem : building - fiber : not building - endian : not building - dynamic_bitset : not building - dll : not building - detail : not building - describe : not building - crc : not building - coroutine2 : not building - coroutine : not building - core : not building - conversion : not building - context : building - container_hash : not building - container : not building - concept_check : not building - compat : not building - cobalt : not building - chrono : not building - charconv : not building - bind : not building - bimap : not building - beast : not building - atomic : building - assign : not building - assert : not building - asio : not building - array : not building - any : not building boost/1.88.0: Package 'dc1725223e6d4655bf67314e4d4a203fb776cdd7' built boost/1.88.0: Build folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/boostc18f657d24ac6/b/build-release boost/1.88.0: Generating the package boost/1.88.0: Packaging in folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/boostc18f657d24ac6/p boost/1.88.0: Calling package() boost/1.88.0: package(): Packaged 15546 '.hpp' files boost/1.88.0: package(): Packaged 151 '.h' files boost/1.88.0: package(): Packaged 293 '.ipp' files boost/1.88.0: package(): Packaged 2 '.inc' files: strict_cpp_re.inc, cpp_re.inc boost/1.88.0: package(): Packaged 1 '.txt' file: LICENSE_1_0.txt boost/1.88.0: package(): Packaged 5 '.a' files boost/1.88.0: Created package revision 5a6023f1c65439d64514a828c77956ad boost/1.88.0: Package 'dc1725223e6d4655bf67314e4d4a203fb776cdd7' created boost/1.88.0: Full package reference: boost/1.88.0#14ecfc01dd5a690f15e1318e56a6b78c:dc1725223e6d4655bf67314e4d4a203fb776cdd7#5a6023f1c65439d64514a828c77956ad boost/1.88.0: Package folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/boostc18f657d24ac6/p hdf5/1.14.6: Sources downloaded from 'conancenter' hdf5/1.14.6: Calling source() in /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/hdf51a2c79ed0e701/s/src hdf5/1.14.6: Downloading 39.2MB hdf5_1.14.6.tar.gz hdf5/1.14.6: Uncompressing hdf5_1.14.6.tar.gz to . -------- Installing package hdf5/1.14.6 (18 of 23) -------- hdf5/1.14.6: Building from source hdf5/1.14.6: Package hdf5/1.14.6:459c23bd7d939071d1d944c503840db7579be036 hdf5/1.14.6: settings: os=Linux arch=x86_64 compiler=clang compiler.version=19 build_type=Release hdf5/1.14.6: options: enable_cxx=False enable_unsupported=False fPIC=True hl=False parallel=False shared=False szip_support=None threadsafe=False with_zlib=True with_zlibng=False hdf5/1.14.6: requires: zlib/1.3.Z hdf5/1.14.6: Copying sources to build folder hdf5/1.14.6: Building your package in /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/b hdf5/1.14.6: Calling generate() hdf5/1.14.6: Generators folder: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/b/build/Release/generators hdf5/1.14.6: CMakeToolchain generated: conan_toolchain.cmake hdf5/1.14.6: CMakeToolchain generated: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/b/build/Release/generators/CMakePresets.json hdf5/1.14.6: CMakeToolchain generated: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/b/src/CMakeUserPresets.json hdf5/1.14.6: Generating aggregated env files hdf5/1.14.6: Generated aggregated env files: ['conanbuild.sh', 'conanrun.sh'] hdf5/1.14.6: Calling build() hdf5/1.14.6: apply_conandata_patches(): No patches defined in conandata hdf5/1.14.6: Running CMake.configure() hdf5/1.14.6: RUN: cmake -G "Ninja" -DCMAKE_TOOLCHAIN_FILE="generators/conan_toolchain.cmake" -DCMAKE_INSTALL_PREFIX="/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p" -DCMAKE_POLICY_DEFAULT_CMP0091="NEW" -DCMAKE_BUILD_TYPE="Release" "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/b/src" -- Using Conan toolchain: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/b/build/Release/generators/conan_toolchain.cmake -- Conan toolchain: Setting CMAKE_POSITION_INDEPENDENT_CODE=ON (options.fPIC) -- Conan toolchain: Defining architecture flag: -m64 -- Conan toolchain: Setting BUILD_SHARED_LIBS = OFF -- The C compiler identification is Clang 19.1.7 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/clang-19 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Final: share -- Looking for include file sys/file.h -- Looking for include file sys/file.h - found -- Looking for include files sys/file.h, sys/ioctl.h -- Looking for include files sys/file.h, sys/ioctl.h - found -- Looking for 3 include files sys/file.h, ..., sys/resource.h -- Looking for 3 include files sys/file.h, ..., sys/resource.h - found -- Looking for 4 include files sys/file.h, ..., sys/socket.h -- Looking for 4 include files sys/file.h, ..., sys/socket.h - found -- Looking for 5 include files sys/file.h, ..., sys/stat.h -- Looking for 5 include files sys/file.h, ..., sys/stat.h - found -- Looking for 6 include files sys/file.h, ..., sys/time.h -- Looking for 6 include files sys/file.h, ..., sys/time.h - found -- Looking for 7 include files sys/file.h, ..., sys/types.h -- Looking for 7 include files sys/file.h, ..., sys/types.h - found -- Looking for 8 include files sys/file.h, ..., features.h -- Looking for 8 include files sys/file.h, ..., features.h - found -- Looking for 9 include files sys/file.h, ..., dirent.h -- Looking for 9 include files sys/file.h, ..., dirent.h - found -- Looking for 10 include files sys/file.h, ..., unistd.h -- Looking for 10 include files sys/file.h, ..., unistd.h - found -- Looking for 11 include files sys/file.h, ..., pwd.h -- Looking for 11 include files sys/file.h, ..., pwd.h - found -- Looking for 12 include files sys/file.h, ..., pthread.h -- Looking for 12 include files sys/file.h, ..., pthread.h - found -- Looking for 13 include files sys/file.h, ..., dlfcn.h -- Looking for 13 include files sys/file.h, ..., dlfcn.h - found -- Looking for 14 include files sys/file.h, ..., netinet/in.h -- Looking for 14 include files sys/file.h, ..., netinet/in.h - found -- Looking for 15 include files sys/file.h, ..., netdb.h -- Looking for 15 include files sys/file.h, ..., netdb.h - found -- Looking for 16 include files sys/file.h, ..., arpa/inet.h -- Looking for 16 include files sys/file.h, ..., arpa/inet.h - found -- Looking for include file quadmath.h -- Looking for include file quadmath.h - not found -- Looking for ceil in m; -- Looking for ceil in m; - found -- Looking for dlopen in dl;m -- Looking for dlopen in dl;m - found -- Looking for WSAStartup in ws2_32;m;dl -- Looking for WSAStartup in ws2_32;m;dl - not found -- Looking for gethostbyname in wsock32;m;dl -- Looking for gethostbyname in wsock32;m;dl - not found -- Looking for gethostname in ucb;m;dl -- Looking for gethostname in ucb;m;dl - not found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of char -- Check size of char - done -- Check size of short -- Check size of short - done -- Check size of int -- Check size of int - done -- Check size of unsigned -- Check size of unsigned - done -- Check size of long -- Check size of long - done -- Check size of long long -- Check size of long long - done -- Check size of float -- Check size of float - done -- Check size of double -- Check size of double - done -- Check size of long double -- Check size of long double - done -- Check size of int8_t -- Check size of int8_t - done -- Check size of uint8_t -- Check size of uint8_t - done -- Check size of int_least8_t -- Check size of int_least8_t - done -- Check size of uint_least8_t -- Check size of uint_least8_t - done -- Check size of int_fast8_t -- Check size of int_fast8_t - done -- Check size of uint_fast8_t -- Check size of uint_fast8_t - done -- Check size of int16_t -- Check size of int16_t - done -- Check size of uint16_t -- Check size of uint16_t - done -- Check size of int_least16_t -- Check size of int_least16_t - done -- Check size of uint_least16_t -- Check size of uint_least16_t - done -- Check size of int_fast16_t -- Check size of int_fast16_t - done -- Check size of uint_fast16_t -- Check size of uint_fast16_t - done -- Check size of int32_t -- Check size of int32_t - done -- Check size of uint32_t -- Check size of uint32_t - done -- Check size of int_least32_t -- Check size of int_least32_t - done -- Check size of uint_least32_t -- Check size of uint_least32_t - done -- Check size of int_fast32_t -- Check size of int_fast32_t - done -- Check size of uint_fast32_t -- Check size of uint_fast32_t - done -- Check size of int64_t -- Check size of int64_t - done -- Check size of uint64_t -- Check size of uint64_t - done -- Check size of int_least64_t -- Check size of int_least64_t - done -- Check size of uint_least64_t -- Check size of uint_least64_t - done -- Check size of int_fast64_t -- Check size of int_fast64_t - done -- Check size of uint_fast64_t -- Check size of uint_fast64_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of ssize_t -- Check size of ssize_t - done -- Check size of ptrdiff_t -- Check size of ptrdiff_t - done -- Check size of off_t -- Check size of off_t - done -- Check size of time_t -- Check size of time_t - done -- Check size of _Bool -- Check size of _Bool - done -- Looking for CLOCK_MONOTONIC -- Looking for CLOCK_MONOTONIC - not found -- Performing Test H5_HAVE_TM_GMTOFF -- Performing Test H5_HAVE_TM_GMTOFF - Success -- Performing Test H5_HAVE___TM_GMTOFF -- Performing Test H5_HAVE___TM_GMTOFF - Failed -- Performing Test H5_HAVE_STRUCT_TIMEZONE -- Performing Test H5_HAVE_STRUCT_TIMEZONE - Failed -- Looking for gettimeofday -- Looking for gettimeofday - found -- Performing Test H5_HAVE_STAT_ST_BLOCKS -- Performing Test H5_HAVE_STAT_ST_BLOCKS - Success -- Looking for ioctl -- Looking for ioctl - found -- Performing Test H5_HAVE_STRUCT_VIDEOCONFIG -- Performing Test H5_HAVE_STRUCT_VIDEOCONFIG - Failed -- Performing Test H5_HAVE_STRUCT_TEXT_INFO -- Performing Test H5_HAVE_STRUCT_TEXT_INFO - Failed -- Looking for _getvideoconfig -- Looking for _getvideoconfig - not found -- Looking for gettextinfo -- Looking for gettextinfo - not found -- Looking for _scrsize -- Looking for _scrsize - not found -- Looking for GetConsoleScreenBufferInfo -- Looking for GetConsoleScreenBufferInfo - not found -- Looking for TIOCGWINSZ -- Looking for TIOCGWINSZ - found -- Looking for TIOCGETD -- Looking for TIOCGETD - found -- Looking for alarm -- Looking for alarm - found -- Looking for fcntl -- Looking for fcntl - found -- Looking for flock -- Looking for flock - found -- Looking for fork -- Looking for fork - found -- Looking for gethostname -- Looking for gethostname - found -- Looking for getrusage -- Looking for getrusage - found -- Looking for pread -- Looking for pread - found -- Looking for pwrite -- Looking for pwrite - found -- Looking for rand_r -- Looking for rand_r - found -- Looking for random -- Looking for random - found -- Looking for strcasestr -- Looking for strcasestr - found -- Looking for strdup -- Looking for strdup - found -- Looking for symlink -- Looking for symlink - found -- Looking for tmpfile -- Looking for tmpfile - found -- Looking for asprintf -- Looking for asprintf - found -- Looking for vasprintf -- Looking for vasprintf - found -- Looking for waitpid -- Looking for waitpid - found -- Looking for sigsetjmp -- Looking for sigsetjmp - found -- Looking for clock_gettime -- Looking for clock_gettime - found -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for clock_gettime in posix4 -- Looking for clock_gettime in posix4 - not found -- Check size of CLOCK_MONOTONIC_COARSE -- Check size of CLOCK_MONOTONIC_COARSE - done -- Checking if _Float16 support is available -- Check size of _Float16 -- Check size of _Float16 - done -- Looking for FLT16_EPSILON -- Looking for FLT16_EPSILON - found -- Looking for FLT16_MIN -- Looking for FLT16_MIN - found -- Looking for FLT16_MAX -- Looking for FLT16_MAX - found -- Looking for FLT16_MIN_10_EXP -- Looking for FLT16_MIN_10_EXP - found -- Looking for FLT16_MAX_10_EXP -- Looking for FLT16_MAX_10_EXP - found -- Looking for FLT16_MANT_DIG -- Looking for FLT16_MANT_DIG - found -- Looking for fabsf16 -- Looking for fabsf16 - not found -- Found Perl: /usr/bin/perl (found version "5.40.1") -- ....All Warnings are enabled -- Conan: Target declared 'ZLIB::ZLIB' -- Found ZLIB: 1.3.1 (found version "1.3.1") -- Configuring done (16.3s) -- Generating done (0.0s) -- Build files have been written to: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/b/build/Release hdf5/1.14.6: Running CMake.build() hdf5/1.14.6: RUN: cmake --build "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/b/build/Release" -- -j32 [1/356] Building C object src/CMakeFiles/hdf5-static.dir/H5build_settings.c.o [2/356] Building C object src/CMakeFiles/hdf5-static.dir/H5mpi.c.o [3/356] Building C object src/CMakeFiles/hdf5-static.dir/H5dbg.c.o [4/356] Building C object src/CMakeFiles/hdf5-static.dir/H5ACmpio.c.o [5/356] Building C object src/CMakeFiles/hdf5-static.dir/H5B2stat.c.o [6/356] Building C object 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[228/356] Building C object src/CMakeFiles/hdf5-static.dir/H5Oshmesg.c.o [229/356] Building C object src/CMakeFiles/hdf5-static.dir/H5Ounknown.c.o [230/356] Building C object src/CMakeFiles/hdf5-static.dir/H5Ocopy.c.o [231/356] Building C object src/CMakeFiles/hdf5-static.dir/H5Ostab.c.o [232/356] Building C object src/CMakeFiles/hdf5-static.dir/H5Oshared.c.o [233/356] Building C object src/CMakeFiles/hdf5-static.dir/H5O.c.o [234/356] Building C object src/CMakeFiles/hdf5-static.dir/H5Pfmpl.c.o [235/356] Building C object src/CMakeFiles/hdf5-static.dir/H5Opline.c.o [236/356] Building C object src/CMakeFiles/hdf5-static.dir/H5Osdspace.c.o [237/356] Building C object src/CMakeFiles/hdf5-static.dir/H5MF.c.o /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/b/src/src/H5MF.c:2078:84: warning: arithmetic between different enumeration types ('H5F_mem_page_t' (aka 'enum H5F_mem_page_t') and 'enum H5F_mem_t') [-Wenum-enum-conversion] 2078 | : ((ptype % H5FD_MEM_NTYPES) + 1)); | ~~~~~ ^ ~~~~~~~~~~~~~~~ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/b/src/src/H5MF.c:2318:50: warning: arithmetic between different enumeration types ('H5F_mem_page_t' (aka 'enum H5F_mem_page_t') and 'enum H5F_mem_t') [-Wenum-enum-conversion] 2318 | end_type = (H5F_mem_page_t)(end_type + H5FD_MEM_NTYPES); | ~~~~~~~~ ^ ~~~~~~~~~~~~~~~ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/b/src/src/H5MF.c:2372:38: warning: arithmetic between different enumeration types ('H5F_mem_page_t' (aka 'enum H5F_mem_page_t') and 'enum H5F_mem_t') [-Wenum-enum-conversion] 2372 | ty = (H5F_mem_page_t)(ty + H5FD_MEM_NTYPES - 2); | ~~ ^ ~~~~~~~~~~~~~~~ 3 warnings generated. 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src/CMakeFiles/hdf5-static.dir/H5VLnative_dataset.c.o [333/356] Building C object src/CMakeFiles/hdf5-static.dir/H5Zfletcher32.c.o [334/356] Building C object src/CMakeFiles/hdf5-static.dir/H5VL.c.o [335/356] Building C object src/CMakeFiles/hdf5-static.dir/H5VLpassthru.c.o [336/356] Building C object utils/mirror_vfd/CMakeFiles/mirror_server.dir/mirror_remote.c.o [337/356] Building C object src/CMakeFiles/hdf5-static.dir/H5Zshuffle.c.o [338/356] Building C object utils/mirror_vfd/CMakeFiles/mirror_server.dir/mirror_writer.c.o [339/356] Building C object src/CMakeFiles/hdf5-static.dir/H5Zszip.c.o [340/356] Building C object utils/mirror_vfd/CMakeFiles/mirror_server.dir/mirror_server.c.o [341/356] Building C object src/CMakeFiles/hdf5-static.dir/H5Pfapl.c.o [342/356] Building C object src/CMakeFiles/hdf5-static.dir/H5VM.c.o [343/356] Building C object src/CMakeFiles/hdf5-static.dir/H5VLint.c.o [344/356] Building C object src/CMakeFiles/hdf5-static.dir/H5Z.c.o [345/356] Building C object src/CMakeFiles/hdf5-static.dir/H5Znbit.c.o [346/356] Building C object src/CMakeFiles/hdf5-static.dir/H5T.c.o [347/356] Building C object src/CMakeFiles/hdf5-static.dir/H5SL.c.o [348/356] Building C object src/CMakeFiles/hdf5-static.dir/H5VLcallback.c.o [349/356] Building C object src/CMakeFiles/hdf5-static.dir/H5Zscaleoffset.c.o [350/356] Building C object src/CMakeFiles/hdf5-static.dir/H5Ztrans.c.o [351/356] Building C object src/CMakeFiles/hdf5-static.dir/H5Shyper.c.o [352/356] Building C object src/CMakeFiles/hdf5-static.dir/H5Tconv_float.c.o [353/356] Building C object src/CMakeFiles/hdf5-static.dir/H5Tconv_integer.c.o [354/356] Linking C static library src/libhdf5.a [355/356] Linking C executable utils/mirror_vfd/mirror_server [356/356] Linking C executable utils/mirror_vfd/mirror_server_stop hdf5/1.14.6: Package '459c23bd7d939071d1d944c503840db7579be036' built hdf5/1.14.6: Build folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/b/build/Release hdf5/1.14.6: Generating the package hdf5/1.14.6: Packaging in folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p hdf5/1.14.6: Calling package() hdf5/1.14.6: Running CMake.install() hdf5/1.14.6: RUN: cmake --install "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/b/build/Release" --prefix "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p" -- Install configuration: "Release" -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/hdf5.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5api_adpt.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5encode.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5public.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5Apublic.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5ACpublic.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5Cpublic.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5Dpublic.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5Epubgen.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5Epublic.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5ESdevelop.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5ESpublic.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5Fpublic.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5FDcore.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5FDdevelop.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5FDdirect.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5FDfamily.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5FDhdfs.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5FDlog.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5FDmirror.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5FDmpi.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5FDmpio.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5FDmulti.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5FDonion.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5FDpublic.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5FDros3.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5FDs3comms.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5FDsec2.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5FDsplitter.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5FDstdio.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5FDwindows.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5FDsubfiling.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5FDioc.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5Gpublic.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5Idevelop.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5Ipublic.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5Ldevelop.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5Lpublic.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5Mpublic.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5MMpublic.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5Opublic.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5Ppublic.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5PLextern.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5PLpublic.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5Rpublic.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5Spublic.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5Tdevelop.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5Tpublic.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5TSdevelop.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5VLconnector.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5VLconnector_passthru.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5VLnative.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5VLpassthru.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5VLpublic.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5Zdevelop.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5Zpublic.h -- Up-to-date: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5Epubgen.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5version.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5overflow.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/include/hdf5/H5pubconf.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/lib/libhdf5.a -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/lib/pkgconfig/hdf5.pc -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/bin/h5cc -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/bin/mirror_server -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/bin/mirror_server_stop -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/bin/h5fuse -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/lib/libhdf5.settings hdf5/1.14.6: package(): Packaged 59 '.h' files hdf5/1.14.6: package(): Packaged 5 files hdf5/1.14.6: package(): Packaged 1 '.a' file: libhdf5.a hdf5/1.14.6: package(): Packaged 2 '.cmake' files: conan-official-hdf5-variables.cmake, conan-official-hdf5-targets.cmake hdf5/1.14.6: Created package revision c10328fcd13fa24866f2e007d39906b6 hdf5/1.14.6: Package '459c23bd7d939071d1d944c503840db7579be036' created hdf5/1.14.6: Full package reference: hdf5/1.14.6#6f1acd01d23d00735fe97300f4d5980c:459c23bd7d939071d1d944c503840db7579be036#c10328fcd13fa24866f2e007d39906b6 hdf5/1.14.6: Package folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p mimalloc/1.7.6: Sources downloaded from 'conancenter' mimalloc/1.7.6: Calling source() in /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/mimal7e4fa21301eb0/s/src mimalloc/1.7.6: Uncompressing v1.7.6.tar.gz to . -------- Installing package mimalloc/1.7.6 (19 of 23) -------- mimalloc/1.7.6: Building from source mimalloc/1.7.6: Package mimalloc/1.7.6:7182e778f8a09f43d949188464662de5f4652380 mimalloc/1.7.6: settings: os=Linux arch=x86_64 compiler=clang compiler.cppstd=17 compiler.libcxx=libstdc++11 compiler.version=19 build_type=Release mimalloc/1.7.6: options: fPIC=True override=False secure=False shared=False mimalloc/1.7.6: Copying sources to build folder mimalloc/1.7.6: Building your package in /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/b mimalloc/1.7.6: Calling generate() mimalloc/1.7.6: Generators folder: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/b/build/Release/generators mimalloc/1.7.6: CMakeToolchain generated: conan_toolchain.cmake mimalloc/1.7.6: CMakeToolchain generated: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/b/build/Release/generators/CMakePresets.json mimalloc/1.7.6: CMakeToolchain generated: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/b/src/CMakeUserPresets.json mimalloc/1.7.6: Generating aggregated env files mimalloc/1.7.6: Generated aggregated env files: ['conanbuild.sh', 'conanrun.sh'] mimalloc/1.7.6: Calling build() mimalloc/1.7.6: Apply patch (conan): fix install paths mimalloc/1.7.6: Running CMake.configure() mimalloc/1.7.6: RUN: cmake -G "Ninja" -DCMAKE_TOOLCHAIN_FILE="generators/conan_toolchain.cmake" -DCMAKE_INSTALL_PREFIX="/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/p" -DCMAKE_POLICY_VERSION_MINIMUM="3.5" -DCMAKE_POLICY_DEFAULT_CMP0091="NEW" -DCMAKE_BUILD_TYPE="Release" "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/b/src" CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Using Conan toolchain: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/b/build/Release/generators/conan_toolchain.cmake -- Conan toolchain: Setting CMAKE_POSITION_INDEPENDENT_CODE=ON (options.fPIC) -- Conan toolchain: Defining architecture flag: -m64 -- Conan toolchain: Defining libcxx as C++ flags: -stdlib=libstdc++ -- Conan toolchain: C++ Standard 17 with extensions OFF -- Conan toolchain: Setting BUILD_SHARED_LIBS = OFF -- The C compiler identification is Clang 19.1.7 -- The CXX compiler identification is Clang 19.1.7 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/clang-19 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/clang++-19 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/b/build/Release/generators/conan_toolchain.cmake:57 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "CMAKE_C_STANDARD" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): CMakeLists.txt:9223372036854775807 (conan_modify_std_watch) CMakeLists.txt:5 (set) This warning is for project developers. Use -Wno-dev to suppress it. -- -- -- Library base name: mimalloc -- Version : 1.7 -- Build type : release -- C Compiler : /usr/bin/clang-19 -- Compiler flags : -Wall;-Wextra;-Wno-unknown-pragmas;-fvisibility=hidden;-Wstrict-prototypes;-Wpedantic;-Wno-static-in-inline;-ftls-model=initial-exec -- Compiler defines : -- Link libraries : /usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/librt.a -- Build targets : static -- -- Configuring done (0.7s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_POLICY_VERSION_MINIMUM -- Build files have been written to: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/b/build/Release mimalloc/1.7.6: Running CMake.build() mimalloc/1.7.6: RUN: cmake --build "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/b/build/Release" -- -j32 [1/15] Building C object CMakeFiles/mimalloc-static.dir/src/alloc-posix.c.o [2/15] Building C object CMakeFiles/mimalloc-static.dir/src/init.c.o [3/15] Building C object CMakeFiles/mimalloc-static.dir/src/random.c.o [4/15] Building C object CMakeFiles/mimalloc-static.dir/src/arena.c.o [5/15] Building C object CMakeFiles/mimalloc-static.dir/src/region.c.o [6/15] Building C object CMakeFiles/mimalloc-static.dir/src/alloc-aligned.c.o [7/15] Building C object CMakeFiles/mimalloc-static.dir/src/stats.c.o [8/15] Building C object CMakeFiles/mimalloc-static.dir/src/heap.c.o /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/b/src/src/heap.c:34:10: warning: variable 'count' set but not used [-Wunused-but-set-variable] 34 | size_t count = 0; | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/b/src/src/heap.c:488:10: warning: variable 'free_count' set but not used [-Wunused-but-set-variable] 488 | size_t free_count = 0; | ^ /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/b/src/src/heap.c:503:10: warning: variable 'used_count' set but not used [-Wunused-but-set-variable] 503 | size_t used_count = 0; | ^ 3 warnings generated. [9/15] Building C object CMakeFiles/mimalloc-static.dir/src/options.c.o /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/b/src/src/options.c:266:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 266 | static void mi_add_stderr_output() { | ^ | void 1 warning generated. [10/15] Building C object CMakeFiles/mimalloc-static.dir/src/bitmap.c.o [11/15] Building C object CMakeFiles/mimalloc-static.dir/src/os.c.o [12/15] Building C object CMakeFiles/mimalloc-static.dir/src/alloc.c.o [13/15] Building C object CMakeFiles/mimalloc-static.dir/src/segment.c.o [14/15] Building C object CMakeFiles/mimalloc-static.dir/src/page.c.o /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/b/src/src/page.c:661:10: warning: variable 'count' set but not used [-Wunused-but-set-variable] 661 | size_t count = 0; | ^ 1 warning generated. [15/15] Linking C static library libmimalloc.a mimalloc/1.7.6: Package '7182e778f8a09f43d949188464662de5f4652380' built mimalloc/1.7.6: Build folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/b/build/Release mimalloc/1.7.6: Generating the package mimalloc/1.7.6: Packaging in folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/p mimalloc/1.7.6: Calling package() mimalloc/1.7.6: Running CMake.install() mimalloc/1.7.6: RUN: cmake --install "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/b/build/Release" --prefix "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/p" -- Install configuration: "Release" -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/p/lib/libmimalloc.a -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/p/lib/cmake/mimalloc/mimalloc.cmake -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/p/lib/cmake/mimalloc/mimalloc-release.cmake -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/p/include/mimalloc.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/p/include/mimalloc-override.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/p/include/mimalloc-new-delete.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/p/lib/cmake/mimalloc/mimalloc-config.cmake -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/p/lib/cmake/mimalloc/mimalloc-config-version.cmake mimalloc/1.7.6: package(): Packaged 3 '.h' files: mimalloc-override.h, mimalloc.h, mimalloc-new-delete.h mimalloc/1.7.6: package(): Packaged 1 file: LICENSE mimalloc/1.7.6: package(): Packaged 1 '.a' file: libmimalloc.a mimalloc/1.7.6: Created package revision 79415f90b747156259a9dbac6dde2982 mimalloc/1.7.6: Package '7182e778f8a09f43d949188464662de5f4652380' created mimalloc/1.7.6: Full package reference: mimalloc/1.7.6#38e7b2fbff43efcae957e6a530a62b76:7182e778f8a09f43d949188464662de5f4652380#79415f90b747156259a9dbac6dde2982 mimalloc/1.7.6: Package folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/p arrow/21.0.0: Sources downloaded from 'conancenter' arrow/21.0.0: Calling source() in /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/arrow185c35e2dc843/s/src arrow/21.0.0: Downloading 17.3MB apache-arrow-21.0.0.tar.gz arrow/21.0.0: Uncompressing apache-arrow-21.0.0.tar.gz to . arrow/21.0.0: Apply patch (conan): use cci package -------- Installing package arrow/21.0.0 (21 of 23) -------- arrow/21.0.0: Building from source arrow/21.0.0: Package arrow/21.0.0:e5ce193aa93a5bceb51120e5bbe66d7b9ac453ed arrow/21.0.0: settings: os=Linux arch=x86_64 compiler=clang compiler.cppstd=17 compiler.libcxx=libstdc++11 compiler.version=19 build_type=Release arrow/21.0.0: options: acero=False cli=False compute=True dataset_modules=False deprecated=True encryption=False fPIC=True filesystem_layer=False gandiva=False hdfs_bridgs=False parquet=False plasma=deprecated runtime_simd_level=max shared=False simd_level=default skyhook=False substrait=False with_backtrace=False with_boost=True with_brotli=False with_bz2=False with_csv=False with_cuda=False with_flight_rpc=False with_flight_sql=False with_gcs=False with_gflags=False with_glog=False with_grpc=False with_jemalloc=False with_json=False with_llvm=False with_lz4=False with_mimalloc=True with_openssl=False with_opentelemetry=False with_orc=False with_protobuf=False with_re2=True with_s3=False with_snappy=False with_thrift=False with_utf8proc=False with_zlib=True with_zstd=False arrow/21.0.0: requires: mimalloc/1.7.Z boost/1.88.Z xsimd/13.0.0#3e7543dc526b0f612fe291e0f198c9dc:da39a3ee5e6b4b0d3255bfef95601890afd80709 zlib/1.3.Z re2/20230301.0.Z arrow/21.0.0: Copying sources to build folder arrow/21.0.0: Building your package in /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/b arrow/21.0.0: Calling generate() arrow/21.0.0: Generators folder: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/b/build/Release/generators arrow/21.0.0: CMakeToolchain generated: conan_toolchain.cmake arrow/21.0.0: CMakeToolchain generated: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/b/build/Release/generators/CMakePresets.json arrow/21.0.0: Generating aggregated env files arrow/21.0.0: Generated aggregated env files: ['conanbuild.sh', 'conanrun.sh'] arrow/21.0.0: Calling build() arrow/21.0.0: Running CMake.configure() arrow/21.0.0: RUN: cmake -G "Ninja" -DCMAKE_TOOLCHAIN_FILE="generators/conan_toolchain.cmake" -DCMAKE_INSTALL_PREFIX="/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p" -DCMAKE_PROJECT_arrow_INCLUDE="/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/b/src/conan_cmake_project_include.cmake" -DCMAKE_POLICY_DEFAULT_CMP0091="NEW" -DCMAKE_BUILD_TYPE="Release" "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/b/src/cpp" -- Building using CMake version: 3.31.8 -- Using Conan toolchain: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/b/build/Release/generators/conan_toolchain.cmake -- Conan toolchain: Setting CMAKE_POSITION_INDEPENDENT_CODE=ON (options.fPIC) -- Conan toolchain: Defining architecture flag: -m64 -- Conan toolchain: Defining libcxx as C++ flags: -stdlib=libstdc++ -- Conan toolchain: C++ Standard 17 with extensions OFF -- Conan toolchain: Setting BUILD_SHARED_LIBS = OFF -- The C compiler identification is Clang 19.1.7 -- The CXX compiler identification is Clang 19.1.7 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/clang-19 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/clang++-19 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Arrow version: 21.0.0 (full: '21.0.0') -- Arrow SO version: 2100 (full: 2100.0.0) -- clang-tidy 14 not found -- clang-format 14 not found -- Could NOT find ClangTools (missing: CLANG_FORMAT_BIN CLANG_TIDY_BIN) -- infer not found -- Found Python3: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/venv/bin/python3.13 (found version "3.13.5") found components: Interpreter fatal: not a git repository (or any of the parent directories): .git -- System processor: x86_64 -- Performing Test CXX_SUPPORTS_SSE4_2 -- Performing Test CXX_SUPPORTS_SSE4_2 - Success -- Performing Test CXX_SUPPORTS_AVX2 -- Performing Test CXX_SUPPORTS_AVX2 - Success -- Performing Test CXX_SUPPORTS_AVX512 -- Performing Test CXX_SUPPORTS_AVX512 - Success -- Arrow build warning level: PRODUCTION -- Using ld linker -- Build Type: Release -- Performing Test CXX_LINKER_SUPPORTS_VERSION_SCRIPT -- Performing Test CXX_LINKER_SUPPORTS_VERSION_SCRIPT - Success -- Using SYSTEM approach to find dependencies -- ARROW_ABSL_BUILD_VERSION: 20211102.0 -- ARROW_ABSL_BUILD_SHA256_CHECKSUM: dcf71b9cba8dc0ca9940c4b316a0c796be8fab42b070bb6b7cab62b48f0e66c4 -- ARROW_AWS_C_AUTH_BUILD_VERSION: v0.9.0 -- ARROW_AWS_C_AUTH_BUILD_SHA256_CHECKSUM: aa6e98864fefb95c249c100da4ae7aed36ba13a8a91415791ec6fad20bec0427 -- ARROW_AWS_C_CAL_BUILD_VERSION: v0.9.2 -- ARROW_AWS_C_CAL_BUILD_SHA256_CHECKSUM: f9f3bc6a069e2efe25fcdf73e4d2b16b5608c327d2eb57c8f7a8524e9e1fcad0 -- ARROW_AWS_C_COMMON_BUILD_VERSION: v0.12.3 -- ARROW_AWS_C_COMMON_BUILD_SHA256_CHECKSUM: a4e7ac6c6f840cb6ab56b8ee0bcd94a61c59d68ca42570bca518432da4c94273 -- ARROW_AWS_C_COMPRESSION_BUILD_VERSION: v0.3.1 -- ARROW_AWS_C_COMPRESSION_BUILD_SHA256_CHECKSUM: d89fca17a37de762dc34f332d2da402343078da8dbd2224c46a11a88adddf754 -- ARROW_AWS_C_EVENT_STREAM_BUILD_VERSION: v0.5.4 -- ARROW_AWS_C_EVENT_STREAM_BUILD_SHA256_CHECKSUM: cef8b78e362836d15514110fb43a0a0c7a86b0a210d5fe25fd248a82027a7272 -- ARROW_AWS_C_HTTP_BUILD_VERSION: v0.10.2 -- ARROW_AWS_C_HTTP_BUILD_SHA256_CHECKSUM: 048d9d683459ade363fd7cc448c2b6329c78f67a2a0c0cb61c16de4634a2fc6b -- ARROW_AWS_C_IO_BUILD_VERSION: v0.19.1 -- ARROW_AWS_C_IO_BUILD_SHA256_CHECKSUM: f2fea0c066924f7fe3c2b1c7b2fa9be640f5b16a6514854226330e63a1faacd0 -- ARROW_AWS_C_MQTT_BUILD_VERSION: v0.13.1 -- ARROW_AWS_C_MQTT_BUILD_SHA256_CHECKSUM: c54d02c1e46f55bae8d5e6f9c4b0d78d84c1c9d9ac16ba8d78c3361edcd8b5bb -- ARROW_AWS_C_S3_BUILD_VERSION: v0.8.1 -- ARROW_AWS_C_S3_BUILD_SHA256_CHECKSUM: c8b09780691d2b94e50d101c68f01fa2d1c3debb0ff3aed313d93f0d3c9af663 -- ARROW_AWS_C_SDKUTILS_BUILD_VERSION: v0.2.4 -- ARROW_AWS_C_SDKUTILS_BUILD_SHA256_CHECKSUM: 493cbed4fa57e0d4622fcff044e11305eb4fc12445f32c8861025597939175fc -- ARROW_AWS_CHECKSUMS_BUILD_VERSION: v0.2.7 -- ARROW_AWS_CHECKSUMS_BUILD_SHA256_CHECKSUM: 178e8398d98111f29150f7813a70c20ad97ab30be0de02525440355fe84ccb1d -- ARROW_AWS_CRT_CPP_BUILD_VERSION: v0.32.8 -- ARROW_AWS_CRT_CPP_BUILD_SHA256_CHECKSUM: db44260452a0296341fb8e7b987e4c328f08f7829b9f1c740fed9c963e081e93 -- ARROW_AWS_LC_BUILD_VERSION: v1.52.1 -- ARROW_AWS_LC_BUILD_SHA256_CHECKSUM: fe552e3c3522f73afc3c30011745c431c633f7b4e25dcd7b38325f194a7b3b75 -- ARROW_AWSSDK_BUILD_VERSION: 1.11.587 -- ARROW_AWSSDK_BUILD_SHA256_CHECKSUM: b9944ba9905a68d6e53abb4f36ab2b3bd18ac88d8571647bb9f2b8026b76f8cd -- ARROW_AZURE_SDK_BUILD_VERSION: azure-identity_1.9.0 -- ARROW_AZURE_SDK_BUILD_SHA256_CHECKSUM: 97065bfc971ac8df450853ce805f820f52b59457bd7556510186a1569502e4a1 -- ARROW_BOOST_BUILD_VERSION: 1.88.0 -- ARROW_BOOST_BUILD_SHA256_CHECKSUM: dcea50f40ba1ecfc448fdf886c0165cf3e525fef2c9e3e080b9804e8117b9694 -- ARROW_BROTLI_BUILD_VERSION: v1.0.9 -- ARROW_BROTLI_BUILD_SHA256_CHECKSUM: f9e8d81d0405ba66d181529af42a3354f838c939095ff99930da6aa9cdf6fe46 -- ARROW_BZIP2_BUILD_VERSION: 1.0.8 -- ARROW_BZIP2_BUILD_SHA256_CHECKSUM: ab5a03176ee106d3f0fa90e381da478ddae405918153cca248e682cd0c4a2269 -- ARROW_CARES_BUILD_VERSION: 1.17.2 -- ARROW_CARES_BUILD_SHA256_CHECKSUM: 4803c844ce20ce510ef0eb83f8ea41fa24ecaae9d280c468c582d2bb25b3913d -- ARROW_CRC32C_BUILD_VERSION: 1.1.2 -- ARROW_CRC32C_BUILD_SHA256_CHECKSUM: ac07840513072b7fcebda6e821068aa04889018f24e10e46181068fb214d7e56 -- ARROW_GBENCHMARK_BUILD_VERSION: v1.8.3 -- ARROW_GBENCHMARK_BUILD_SHA256_CHECKSUM: 6bc180a57d23d4d9515519f92b0c83d61b05b5bab188961f36ac7b06b0d9e9ce -- ARROW_GFLAGS_BUILD_VERSION: v2.2.2 -- ARROW_GFLAGS_BUILD_SHA256_CHECKSUM: 34af2f15cf7367513b352bdcd2493ab14ce43692d2dcd9dfc499492966c64dcf -- ARROW_GLOG_BUILD_VERSION: v0.5.0 -- ARROW_GLOG_BUILD_SHA256_CHECKSUM: eede71f28371bf39aa69b45de23b329d37214016e2055269b3b5e7cfd40b59f5 -- ARROW_GOOGLE_CLOUD_CPP_BUILD_VERSION: v2.22.0 -- ARROW_GOOGLE_CLOUD_CPP_BUILD_SHA256_CHECKSUM: 0c68782e57959c82e0c81def805c01460a042c1aae0c2feee905acaa2a2dc9bf -- ARROW_GRPC_BUILD_VERSION: v1.46.3 -- ARROW_GRPC_BUILD_SHA256_CHECKSUM: d6cbf22cb5007af71b61c6be316a79397469c58c82a942552a62e708bce60964 -- 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11330d850f5e24d34c4246bc8cb21fcd311e7565d219195713455a576bb11bed -- ARROW_ORC_BUILD_VERSION: 2.1.2 -- ARROW_ORC_BUILD_SHA256_CHECKSUM: 55451e65dea6ed42afb39fe33a88f9dcea8928dca0a0c9c23ef5545587810b4c -- ARROW_PROTOBUF_BUILD_VERSION: v21.3 -- ARROW_PROTOBUF_BUILD_SHA256_CHECKSUM: 2f723218f6cb709ae4cdc4fb5ed56a5951fc5d466f0128ce4c946b8c78c8c49f -- ARROW_RAPIDJSON_BUILD_VERSION: 232389d4f1012dddec4ef84861face2d2ba85709 -- ARROW_RAPIDJSON_BUILD_SHA256_CHECKSUM: b9290a9a6d444c8e049bd589ab804e0ccf2b05dc5984a19ed5ae75d090064806 -- ARROW_RE2_BUILD_VERSION: 2022-06-01 -- ARROW_RE2_BUILD_SHA256_CHECKSUM: f89c61410a072e5cbcf8c27e3a778da7d6fd2f2b5b1445cd4f4508bee946ab0f -- ARROW_SNAPPY_BUILD_VERSION: 1.2.2 -- ARROW_SNAPPY_BUILD_SHA256_CHECKSUM: 90f74bc1fbf78a6c56b3c4a082a05103b3a56bb17bca1a27e052ea11723292dc -- ARROW_SUBSTRAIT_BUILD_VERSION: v0.44.0 -- ARROW_SUBSTRAIT_BUILD_SHA256_CHECKSUM: f989a862f694e7dbb695925ddb7c4ce06aa6c51aca945105c075139aed7e55a2 -- ARROW_S2N_TLS_BUILD_VERSION: v1.5.21 -- 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[225/232] Building CXX object src/arrow/CMakeFiles/arrow_compute_objlib.dir/compute/kernels/scalar_arithmetic.cc.o [226/232] Building CXX object src/arrow/CMakeFiles/arrow_compute_objlib.dir/compute/kernels/scalar_temporal_binary.cc.o [227/232] Building CXX object src/arrow/CMakeFiles/arrow_objlib.dir/scalar.cc.o [228/232] Linking CXX static library release/libarrow.a [229/232] Building CXX object src/arrow/CMakeFiles/arrow_compute_objlib.dir/compute/kernels/scalar_temporal_unary.cc.o [230/232] Building CXX object src/arrow/CMakeFiles/arrow_compute_objlib.dir/compute/kernels/vector_swizzle.cc.o [231/232] Building CXX object src/arrow/CMakeFiles/arrow_compute_objlib.dir/compute/kernels/scalar_round.cc.o [232/232] Linking CXX static library release/libarrow_compute.a arrow/21.0.0: Package 'e5ce193aa93a5bceb51120e5bbe66d7b9ac453ed' built arrow/21.0.0: Build folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/b/build/Release arrow/21.0.0: Generating the package arrow/21.0.0: Packaging in folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p arrow/21.0.0: Calling package() arrow/21.0.0: Running CMake.install() arrow/21.0.0: RUN: cmake --install "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/b/build/Release" --prefix "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p" -- Install configuration: "Release" -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/lib/cmake/Arrow/Findre2Alt.cmake -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/util/config.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/lib/libarrow_compute.a -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/lib/cmake/ArrowCompute/ArrowComputeConfig.cmake -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/lib/cmake/ArrowCompute/ArrowComputeConfigVersion.cmake -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/lib/cmake/ArrowCompute/ArrowComputeTargets.cmake -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/lib/cmake/ArrowCompute/ArrowComputeTargets-release.cmake -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/lib/pkgconfig/arrow-compute.pc -- Installing: 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/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/util/task_group.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/util/test_common.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/util/thread_pool.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/util/time.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/util/tracing.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/util/type_fwd.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/util/type_traits.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/util/ubsan.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/util/union_util.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/util/unreachable.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/util/uri.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/util/utf8.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/util/value_parsing.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/util/vector.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/util/visibility.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/util/windows_compatibility.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/util/windows_fixup.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/ProducerConsumerQueue.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/datetime.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/strptime.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/xxhash.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/datetime/date.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/datetime/ios.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/datetime/tz.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/datetime/tz_private.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/datetime/visibility.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/double-conversion/bignum-dtoa.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/double-conversion/bignum.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/double-conversion/cached-powers.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/double-conversion/diy-fp.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/double-conversion/double-conversion.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/double-conversion/double-to-string.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/double-conversion/fast-dtoa.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/double-conversion/fixed-dtoa.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/double-conversion/ieee.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/double-conversion/string-to-double.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/double-conversion/strtod.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/double-conversion/utils.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/pcg/pcg_extras.hpp -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/pcg/pcg_random.hpp -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/pcg/pcg_uint128.hpp -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/portable-snippets/debug-trap.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/portable-snippets/safe-math.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/vendored/xxhash/xxhash.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/ipc/api.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/ipc/dictionary.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/ipc/feather.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/ipc/message.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/ipc/options.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/ipc/reader.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/ipc/test_common.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/ipc/type_fwd.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/ipc/util.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/include/arrow/ipc/writer.h -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/share/doc/arrow/LICENSE.txt -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/share/doc/arrow/NOTICE.txt -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/share/doc/arrow/README.md -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p/share/arrow/gdb/gdb_arrow.py arrow/21.0.0: package(): Packaged 235 '.h' files arrow/21.0.0: package(): Packaged 3 '.hpp' files: pcg_uint128.hpp, pcg_extras.hpp, pcg_random.hpp arrow/21.0.0: package(): Packaged 2 '.txt' files: LICENSE.txt, NOTICE.txt arrow/21.0.0: package(): Packaged 2 '.a' files: libarrow.a, libarrow_compute.a arrow/21.0.0: Created package revision 22a3bf42467fb9b1b75ccb8cc87f24fc arrow/21.0.0: Package 'e5ce193aa93a5bceb51120e5bbe66d7b9ac453ed' created arrow/21.0.0: Full package reference: arrow/21.0.0#228b4b648a5100809cd7d17451d87233:e5ce193aa93a5bceb51120e5bbe66d7b9ac453ed#22a3bf42467fb9b1b75ccb8cc87f24fc arrow/21.0.0: Package folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p hictk/2.1.4: Calling source() in /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/hictkf2814bce4efa4/s/src hictk/2.1.4: Uncompressing v2.1.4.tar.gz to . -------- Installing package hictk/2.1.4 (23 of 23) -------- hictk/2.1.4: Building from source hictk/2.1.4: Package hictk/2.1.4:da39a3ee5e6b4b0d3255bfef95601890afd80709 hictk/2.1.4: Copying sources to build folder hictk/2.1.4: Building your package in /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/b hictk/2.1.4: Calling generate() hictk/2.1.4: Generators folder: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/b/build/Release/generators hictk/2.1.4: CMakeToolchain generated: conan_toolchain.cmake hictk/2.1.4: CMakeToolchain generated: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/b/build/Release/generators/CMakePresets.json hictk/2.1.4: CMakeToolchain generated: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/b/src/CMakeUserPresets.json hictk/2.1.4: CMakeDeps necessary find_package() and targets for your CMakeLists.txt find_package(Arrow) find_package(Boost) find_package(bshoshany-thread-pool) find_package(concurrentqueue) find_package(Eigen3) find_package(FastFloat) find_package(HighFive) find_package(HDF5) find_package(libdeflate) find_package(phmap) find_package(readerwriterqueue) find_package(span-lite) find_package(spdlog) find_package(fmt) find_package(zstd) target_link_libraries(... arrow::arrow boost::boost bshoshany-thread-pool::bshoshany-thread-pool concurrentqueue::concurrentqueue Eigen3::Eigen FastFloat::fast_float HighFive HDF5::HDF5 libdeflate::libdeflate_static phmap readerwriterqueue::readerwriterqueue nonstd::span-lite spdlog::spdlog_header_only fmt::fmt-header-only zstd::libzstd_static) hictk/2.1.4: Generating aggregated env files hictk/2.1.4: Generated aggregated env files: ['conanbuild.sh', 'conanrun.sh'] hictk/2.1.4: Calling build() hictk/2.1.4: Apply patch (portabiliy): Support including Eigen headers located under eigen3/ hictk/2.1.4: Running CMake.configure() hictk/2.1.4: RUN: cmake -G "Ninja" -DCMAKE_TOOLCHAIN_FILE="generators/conan_toolchain.cmake" -DCMAKE_INSTALL_PREFIX="/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/p" -DCMAKE_POLICY_DEFAULT_CMP0091="NEW" -DCMAKE_BUILD_TYPE="Release" "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/b/src" -- Using Conan toolchain: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/b/build/Release/generators/conan_toolchain.cmake -- Conan toolchain: Defining architecture flag: -m64 -- Conan toolchain: Defining libcxx as C++ flags: -stdlib=libstdc++ -- Conan toolchain: C++ Standard 17 with extensions OFF -- The C compiler identification is Clang 19.1.7 -- The CXX compiler identification is Clang 19.1.7 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/clang-19 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/clang++-19 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- project_options: skipping msvc_toolchain as CMAKE_TOOLCHAIN_FILE is set -- Developer mode is OFF. For developement, use `-DENABLE_DEVELOPER_MODE:BOOL=ON`. Building the project for the end-user... -- Interprocedural optimization is enabled. In other projects, linking with the compiled libraries of this project might require `set(CMAKE_INTERPROCEDURAL_OPTIMIZATION ON)` CMake Warning at /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/b/build/Release/_deps/_hictk_project_options-src/src/Cache.cmake:23 (message): ccache is enabled but was not found. Not using it Call Stack (most recent call first): /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/b/build/Release/_deps/_hictk_project_options-src/src/Index.cmake:247 (enable_cache) /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/b/build/Release/_deps/_hictk_project_options-src/src/DynamicProjectOptions.cmake:250 (project_options) CMakeLists.txt:107 (dynamic_project_options) -- Detected LITTLE_ENDIAN architecture -- Configuring done (1.3s) -- Generating done (0.0s) -- Build files have been written to: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/b/build/Release hictk/2.1.4: Running CMake.build() hictk/2.1.4: RUN: cmake --build "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/b/build/Release" -- -j32 ninja: no work to do. hictk/2.1.4: Package 'da39a3ee5e6b4b0d3255bfef95601890afd80709' built hictk/2.1.4: Build folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/b/build/Release hictk/2.1.4: Generating the package hictk/2.1.4: Packaging in folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/p hictk/2.1.4: Calling package() hictk/2.1.4: Running CMake.install() hictk/2.1.4: RUN: cmake --install "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/b/build/Release" --prefix "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/p" -- Install configuration: "Release" -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/p/include/hictk/balancing/common.hpp -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/p/include/hictk/balancing/ice.hpp -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/p/include/hictk/balancing/methods.hpp -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/p/include/hictk/balancing/scale.hpp -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/p/include/hictk/balancing/sparse_matrix.hpp -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/p/include/hictk/balancing/vc.hpp -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/p/include/hictk/balancing/weights.hpp -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/p/include/hictk/balancing/impl/ice_impl.hpp -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/p/include/hictk/balancing/impl/scale_impl.hpp -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/p/include/hictk/balancing/impl/sparse_matrix_impl.hpp -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/p/include/hictk/balancing/impl/vc_impl.hpp -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/p/include/hictk/balancing/impl/weights_impl.hpp -- Installing: /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/p/include/hictk/bin.hpp -- Installing: 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package(): Packaged 1 file: LICENSE hictk/2.1.4: Created package revision 0f46f4f4f4828f0559f10320457f9afc hictk/2.1.4: Package 'da39a3ee5e6b4b0d3255bfef95601890afd80709' created hictk/2.1.4: Full package reference: hictk/2.1.4#99a93950b1f41becaac3cc1942c584d1:da39a3ee5e6b4b0d3255bfef95601890afd80709#0f46f4f4f4828f0559f10320457f9afc hictk/2.1.4: Package folder /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/p WARN: deprecated: Usage of deprecated Conan 1.X features that will be removed in Conan 2.X: WARN: deprecated: 'env_info' used in: b2/5.3.3, boost/1.88.0 WARN: deprecated: 'cpp_info.names' used in: eigen/3.4.0, libdeflate/1.23, boost/1.88.0, fast_float/8.0.2, hdf5/1.14.6, zlib/1.3.1, parallel-hashmap/2.0.0, span-lite/0.11.0 WARN: deprecated: 'cpp_info.build_modules' used in: xsimd/13.0.0, parallel-hashmap/2.0.0, hdf5/1.14.6 WARN: deprecated: 'cpp_info.filenames' used in: boost/1.88.0, span-lite/0.11.0 WARN: deprecated: 'user_info' used in: boost/1.88.0 ======== Input profiles ======== Profile host: [settings] arch=x86_64 build_type=Release compiler=clang compiler.cppstd=17 compiler.libcxx=libstdc++11 compiler.version=19 os=Linux [conf] tools.cmake.cmaketoolchain:generator=Ninja Profile build: [settings] arch=x86_64 build_type=Release compiler=clang compiler.cppstd=gnu17 compiler.libcxx=libstdc++11 compiler.version=19 os=Linux ======== Computing dependency graph ======== Graph root cli Requirements arrow/21.0.0#228b4b648a5100809cd7d17451d87233 - Cache boost/1.88.0#14ecfc01dd5a690f15e1318e56a6b78c - Cache bshoshany-thread-pool/5.0.0#d94da300363f0c35b8f41b2c5490c94d - Cache concurrentqueue/1.0.4#1e48e1c712bcfd892087c9c622a51502 - Cache eigen/3.4.0#2e192482a8acff96fe34766adca2b24c - Cache fast_float/8.0.2#846ad0ebab16bc265c511095c3b490e9 - Cache fmt/11.2.0#579bb2cdf4a7607621beea4eb4651e0f - Cache hdf5/1.14.6#6f1acd01d23d00735fe97300f4d5980c - Cache hictk/2.1.4#99a93950b1f41becaac3cc1942c584d1 - Cache highfive/2.10.0#75c849a0d940b2d4dae6055915132690 - Cache libdeflate/1.23#4994bea7cf7e93789da161fac8e26a53 - Cache mimalloc/1.7.6#38e7b2fbff43efcae957e6a530a62b76 - Cache parallel-hashmap/2.0.0#82acae64ffe2693fff5fb3f9df8e1746 - Cache re2/20230301#dfd6e2bf050eb90ddd8729cfb4c844a4 - Cache readerwriterqueue/1.0.6#aaa5ff6fac60c2aee591e9e51b063b83 - Cache span-lite/0.11.0#519fd49fff711674cfed8cd17d4ed422 - Cache spdlog/1.15.3#3ca0e9e6b83af4d0151e26541d140c86 - Cache xsimd/13.0.0#3e7543dc526b0f612fe291e0f198c9dc - Cache zlib/1.3.1#b8bc2603263cf7eccbd6e17e66b0ed76 - Cache zstd/1.5.7#fde461c0d847a22f16d3066774f61b11 - Cache Build requirements b2/5.3.3#107c15377719889654eb9a162a673975 - Cache cmake/3.31.8#dde3bde00bb843687e55aea5afa0e220 - Cache cmake/4.1.0#c45377ac8029e0a1738a0c40269991c3 - Cache Resolved version ranges b2/[>=5.2 <6]: b2/5.3.3 cmake/[>=3.18 <4]: cmake/3.31.8 cmake/[>=3.25 <4]: cmake/3.31.8 cmake/[>=3.25]: cmake/4.1.0 zlib/[>=1.2.11 <2]: zlib/1.3.1 Overrides fmt/11.2.0#579bb2cdf4a7607621beea4eb4651e0f: [None, 'fmt/11.2.0#579bb2cdf4a7607621beea4eb4651e0f'] boost/1.85.0: ['boost/1.88.0#14ecfc01dd5a690f15e1318e56a6b78c'] hdf5/1.14.3: ['hdf5/1.14.6#6f1acd01d23d00735fe97300f4d5980c'] ======== Computing necessary packages ======== Requirements arrow/21.0.0#228b4b648a5100809cd7d17451d87233:e5ce193aa93a5bceb51120e5bbe66d7b9ac453ed#22a3bf42467fb9b1b75ccb8cc87f24fc - Cache boost/1.88.0#14ecfc01dd5a690f15e1318e56a6b78c:dc1725223e6d4655bf67314e4d4a203fb776cdd7#5a6023f1c65439d64514a828c77956ad - Cache bshoshany-thread-pool/5.0.0#d94da300363f0c35b8f41b2c5490c94d:da39a3ee5e6b4b0d3255bfef95601890afd80709#97739a2d693ef762e87869abb6ee8f74 - Cache concurrentqueue/1.0.4#1e48e1c712bcfd892087c9c622a51502:da39a3ee5e6b4b0d3255bfef95601890afd80709#d76553f653b5b8bdf7b424d83820fea4 - Cache eigen/3.4.0#2e192482a8acff96fe34766adca2b24c:da39a3ee5e6b4b0d3255bfef95601890afd80709#b2e7c2d86c5d1dbefc534889aa72e12c - Cache fast_float/8.0.2#846ad0ebab16bc265c511095c3b490e9:da39a3ee5e6b4b0d3255bfef95601890afd80709#71fc9357d5e2977298ff6419eed246d0 - Cache fmt/11.2.0#579bb2cdf4a7607621beea4eb4651e0f:da39a3ee5e6b4b0d3255bfef95601890afd80709#2d083f45b55c6afb8ec50fb67dd3c16e - Cache hdf5/1.14.6#6f1acd01d23d00735fe97300f4d5980c:459c23bd7d939071d1d944c503840db7579be036#c10328fcd13fa24866f2e007d39906b6 - Cache hictk/2.1.4#99a93950b1f41becaac3cc1942c584d1:da39a3ee5e6b4b0d3255bfef95601890afd80709#0f46f4f4f4828f0559f10320457f9afc - Cache highfive/2.10.0#75c849a0d940b2d4dae6055915132690:da39a3ee5e6b4b0d3255bfef95601890afd80709#858d2e0aff49c826f1f2da54c7bd5435 - Cache libdeflate/1.23#4994bea7cf7e93789da161fac8e26a53:035983102d94f5d9d7256017a5fd89651d1294c3#b63d7735fae5f4112ed6a7aaf7fbe32f - Cache mimalloc/1.7.6#38e7b2fbff43efcae957e6a530a62b76:7182e778f8a09f43d949188464662de5f4652380#79415f90b747156259a9dbac6dde2982 - Cache parallel-hashmap/2.0.0#82acae64ffe2693fff5fb3f9df8e1746:da39a3ee5e6b4b0d3255bfef95601890afd80709#4e55822c19c91463e20e418d07bb83c0 - Cache re2/20230301#dfd6e2bf050eb90ddd8729cfb4c844a4:dc5068ba5fe1b6dbc8bed0d8e329d7004b0a76d9#a4492afd194affa67168da42eaaa29de - Cache readerwriterqueue/1.0.6#aaa5ff6fac60c2aee591e9e51b063b83:da39a3ee5e6b4b0d3255bfef95601890afd80709#ecdfc46fa6d77a9ac39568d286082d22 - Cache span-lite/0.11.0#519fd49fff711674cfed8cd17d4ed422:da39a3ee5e6b4b0d3255bfef95601890afd80709#4688663223fa1898bdb770089ef588f0 - Cache spdlog/1.15.3#3ca0e9e6b83af4d0151e26541d140c86:da39a3ee5e6b4b0d3255bfef95601890afd80709#cd9a0d7c5d05bf77172be45346efa8c3 - Cache zlib/1.3.1#b8bc2603263cf7eccbd6e17e66b0ed76:035983102d94f5d9d7256017a5fd89651d1294c3#75d20e646ea239177503cdaa59cf1637 - Cache zstd/1.5.7#fde461c0d847a22f16d3066774f61b11:9308e58c41ad3f278ab5d5003e836d4248b52a61#278588a674dd1de616622652b7216cee - Cache Build requirements Skipped binaries xsimd/13.0.0, b2/5.3.3, cmake/3.31.8, cmake/4.1.0 ======== Installing packages ======== bshoshany-thread-pool/5.0.0: Already installed! (1 of 19) concurrentqueue/1.0.4: Already installed! (2 of 19) eigen/3.4.0: Already installed! (3 of 19) fast_float/8.0.2: Already installed! (4 of 19) fmt/11.2.0: Already installed! (5 of 19) libdeflate/1.23: Already installed! (6 of 19) parallel-hashmap/2.0.0: Already installed! (7 of 19) re2/20230301: Already installed! (8 of 19) readerwriterqueue/1.0.6: Already installed! (9 of 19) span-lite/0.11.0: Already installed! (10 of 19) zlib/1.3.1: Already installed! (11 of 19) zstd/1.5.7: Already installed! (12 of 19) boost/1.88.0: Already installed! (13 of 19) mimalloc/1.7.6: Already installed! (14 of 19) hdf5/1.14.6: Already installed! (15 of 19) spdlog/1.15.3: Already installed! (16 of 19) arrow/21.0.0: Already installed! (17 of 19) highfive/2.10.0: Already installed! (18 of 19) hictk/2.1.4: Already installed! (19 of 19) WARN: deprecated: Usage of deprecated Conan 1.X features that will be removed in Conan 2.X: WARN: deprecated: 'cpp_info.names' used in: boost/1.88.0, parallel-hashmap/2.0.0, libdeflate/1.23, eigen/3.4.0, zlib/1.3.1, fast_float/8.0.2, span-lite/0.11.0, hdf5/1.14.6 WARN: deprecated: 'cpp_info.build_modules' used in: parallel-hashmap/2.0.0, hdf5/1.14.6 WARN: deprecated: 'cpp_info.filenames' used in: boost/1.88.0, span-lite/0.11.0 WARN: deprecated: 'env_info' used in: boost/1.88.0 WARN: deprecated: 'user_info' used in: boost/1.88.0 ======== Finalizing install (deploy, generators) ======== cli: Writing generators to /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/tmphovv_wit cli: Generator 'MakeDeps' calling 'generate()' cli: Generated conandeps.mk cli: Generating aggregated env files cli: Generated aggregated env files: ['conanbuild.sh', 'conanrun.sh'] Install finished successfully [2025-08-18 23:39:08,359] INFO: Makevars file has been written to "/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/src/Makevars"... ### BEGIN Makevars export CC := /usr/bin/clang export CXX := /usr/bin/clang++ export CXX17 := /usr/bin/clang++ ### BEGINNING OF conandeps.mk # This Makefile has been generated by Conan. DO NOT EDIT! CONAN_DEPS = \ hictk \ arrow \ mimalloc \ re2 \ boost \ bshoshany-thread-pool \ concurrentqueue \ eigen \ fast_float \ highfive \ hdf5 \ zlib \ libdeflate \ parallel-hashmap \ readerwriterqueue \ span-lite \ spdlog \ fmt \ zstd # hictk/2.1.4 CONAN_NAME_HICTK = hictk CONAN_VERSION_HICTK = 2.1.4 CONAN_REFERENCE_HICTK = hictk/2.1.4 CONAN_ROOT_HICTK = /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hictkcdc929905372b/p CONAN_INCLUDE_DIRS_HICTK = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_HICTK)/include CONAN_DEFINES_HICTK = \ $(CONAN_DEFINE_FLAG)HICTK_WITH_ARROW \ $(CONAN_DEFINE_FLAG)HICTK_WITH_EIGEN CONAN_PROPERTY_HICTK_CMAKE_FILE_NAME = hictk CONAN_PROPERTY_HICTK_CMAKE_TARGET_NAME = hictk::libhictk # arrow/21.0.0 (indirect dependency) CONAN_NAME_ARROW = arrow CONAN_VERSION_ARROW = 21.0.0 CONAN_REFERENCE_ARROW = arrow/21.0.0 CONAN_ROOT_ARROW = /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/arrowc4814efca3774/p CONAN_INCLUDE_DIRS_ARROW = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_ARROW)/include CONAN_LIB_DIRS_ARROW = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_ARROW)/lib CONAN_BIN_DIRS_ARROW = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_ARROW)/bin CONAN_LIBS_ARROW = \ $(CONAN_LIBS_ARROW_LIBARROW) \ $(CONAN_LIBS_ARROW_LIBARROW_COMPUTE) CONAN_DEFINES_ARROW = $(CONAN_DEFINES_ARROW_LIBARROW) CONAN_REQUIRES_ARROW = \ $(CONAN_REQUIRES_ARROW_LIBARROW) \ $(CONAN_REQUIRES_ARROW_LIBARROW_COMPUTE) CONAN_SYSTEM_LIBS_ARROW = $(CONAN_SYSTEM_LIBS_ARROW_LIBARROW) CONAN_COMPONENTS_ARROW = \ libarrow \ libarrow_compute CONAN_PROPERTY_ARROW_CMAKE_FILE_NAME = Arrow # arrow::libarrow CONAN_INCLUDE_DIRS_ARROW_LIBARROW = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_ARROW)/include CONAN_LIB_DIRS_ARROW_LIBARROW = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_ARROW)/lib CONAN_BIN_DIRS_ARROW_LIBARROW = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_ARROW)/bin CONAN_LIBS_ARROW_LIBARROW = $(CONAN_LIB_FLAG)arrow CONAN_DEFINES_ARROW_LIBARROW = $(CONAN_DEFINE_FLAG)ARROW_STATIC CONAN_REQUIRES_ARROW_LIBARROW = \ boost::boost \ mimalloc::mimalloc \ re2::re2 \ xsimd::xsimd \ zlib::zlib CONAN_SYSTEM_LIBS_ARROW_LIBARROW = \ $(CONAN_SYSTEM_LIB_FLAG)pthread \ $(CONAN_SYSTEM_LIB_FLAG)m \ $(CONAN_SYSTEM_LIB_FLAG)dl \ $(CONAN_SYSTEM_LIB_FLAG)rt CONAN_PROPERTY_ARROW_LIBARROW_PKG_CONFIG_NAME = arrow CONAN_PROPERTY_ARROW_LIBARROW_CMAKE_TARGET_NAME = Arrow::arrow_static # arrow::libarrow_compute CONAN_INCLUDE_DIRS_ARROW_LIBARROW_COMPUTE = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_ARROW)/include CONAN_LIB_DIRS_ARROW_LIBARROW_COMPUTE = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_ARROW)/lib CONAN_BIN_DIRS_ARROW_LIBARROW_COMPUTE = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_ARROW)/bin CONAN_LIBS_ARROW_LIBARROW_COMPUTE = $(CONAN_LIB_FLAG)arrow_compute CONAN_REQUIRES_ARROW_LIBARROW_COMPUTE = libarrow CONAN_PROPERTY_ARROW_LIBARROW_COMPUTE_PKG_CONFIG_NAME = arrow_compute CONAN_PROPERTY_ARROW_LIBARROW_COMPUTE_CMAKE_TARGET_NAME = ArrowCompute::arrow_compute_static # mimalloc/1.7.6 (indirect dependency) CONAN_NAME_MIMALLOC = mimalloc CONAN_VERSION_MIMALLOC = 1.7.6 CONAN_REFERENCE_MIMALLOC = mimalloc/1.7.6 CONAN_ROOT_MIMALLOC = /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/mimal00cfd55e7745c/p CONAN_INCLUDE_DIRS_MIMALLOC = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_MIMALLOC)/include CONAN_LIB_DIRS_MIMALLOC = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_MIMALLOC)/lib CONAN_BIN_DIRS_MIMALLOC = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_MIMALLOC)/bin CONAN_LIBS_MIMALLOC = $(CONAN_LIB_FLAG)mimalloc CONAN_SYSTEM_LIBS_MIMALLOC = \ $(CONAN_SYSTEM_LIB_FLAG)pthread \ $(CONAN_SYSTEM_LIB_FLAG)rt CONAN_PROPERTY_MIMALLOC_CMAKE_FILE_NAME = mimalloc CONAN_PROPERTY_MIMALLOC_CMAKE_TARGET_NAME = mimalloc-static # re2/20230301 (indirect dependency) CONAN_NAME_RE2 = re2 CONAN_VERSION_RE2 = 20230301 CONAN_REFERENCE_RE2 = re2/20230301 CONAN_ROOT_RE2 = /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/re2d72cf9b0f781e/p CONAN_INCLUDE_DIRS_RE2 = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_RE2)/include CONAN_LIB_DIRS_RE2 = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_RE2)/lib CONAN_BIN_DIRS_RE2 = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_RE2)/bin CONAN_LIBS_RE2 = $(CONAN_LIB_FLAG)re2 CONAN_SYSTEM_LIBS_RE2 = \ $(CONAN_SYSTEM_LIB_FLAG)m \ $(CONAN_SYSTEM_LIB_FLAG)pthread CONAN_PROPERTY_RE2_CMAKE_FILE_NAME = re2 CONAN_PROPERTY_RE2_CMAKE_TARGET_NAME = re2::re2 CONAN_PROPERTY_RE2_PKG_CONFIG_NAME = re2 # boost/1.88.0 (indirect dependency) CONAN_NAME_BOOST = boost CONAN_VERSION_BOOST = 1.88.0 CONAN_REFERENCE_BOOST = boost/1.88.0 CONAN_ROOT_BOOST = /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/boostc18f657d24ac6/p CONAN_INCLUDE_DIRS_BOOST = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_BOOST)/include CONAN_LIB_DIRS_BOOST = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_BOOST)/lib CONAN_BIN_DIRS_BOOST = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_BOOST)/bin CONAN_LIBS_BOOST = \ $(CONAN_LIBS_BOOST_ATOMIC) \ $(CONAN_LIBS_BOOST_CONTEXT) \ $(CONAN_LIBS_BOOST_DATE_TIME) \ $(CONAN_LIBS_BOOST_FILESYSTEM) CONAN_DEFINES_BOOST = $(CONAN_DEFINES_BOOST_HEADERS) CONAN_REQUIRES_BOOST = \ $(CONAN_REQUIRES_BOOST_HEADERS) \ $(CONAN_REQUIRES_BOOST__BOOST_CMAKE) \ $(CONAN_REQUIRES_BOOST__LIBBOOST) \ $(CONAN_REQUIRES_BOOST_ATOMIC) \ $(CONAN_REQUIRES_BOOST_CONTEXT) \ $(CONAN_REQUIRES_BOOST_DATE_TIME) \ $(CONAN_REQUIRES_BOOST_FILESYSTEM) \ $(CONAN_REQUIRES_BOOST_SYSTEM) CONAN_SYSTEM_LIBS_BOOST = $(CONAN_SYSTEM_LIBS_BOOST__LIBBOOST) CONAN_COMPONENTS_BOOST = \ diagnostic_definitions \ disable_autolinking \ dynamic_linking \ headers \ _boost_cmake \ _libboost \ atomic \ context \ date_time \ system \ filesystem CONAN_PROPERTY_BOOST_CMAKE_FILE_NAME = Boost # boost::diagnostic_definitions CONAN_INCLUDE_DIRS_BOOST_DIAGNOSTIC_DEFINITIONS = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_BOOST)/include CONAN_LIB_DIRS_BOOST_DIAGNOSTIC_DEFINITIONS = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_BOOST)/lib CONAN_BIN_DIRS_BOOST_DIAGNOSTIC_DEFINITIONS = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_BOOST)/bin CONAN_PROPERTY_BOOST_DIAGNOSTIC_DEFINITIONS_CMAKE_TARGET_NAME = Boost::diagnostic_definitions # boost::disable_autolinking CONAN_INCLUDE_DIRS_BOOST_DISABLE_AUTOLINKING = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_BOOST)/include CONAN_LIB_DIRS_BOOST_DISABLE_AUTOLINKING = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_BOOST)/lib CONAN_BIN_DIRS_BOOST_DISABLE_AUTOLINKING = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_BOOST)/bin CONAN_PROPERTY_BOOST_DISABLE_AUTOLINKING_CMAKE_TARGET_NAME = Boost::disable_autolinking # boost::dynamic_linking CONAN_INCLUDE_DIRS_BOOST_DYNAMIC_LINKING = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_BOOST)/include CONAN_LIB_DIRS_BOOST_DYNAMIC_LINKING = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_BOOST)/lib CONAN_BIN_DIRS_BOOST_DYNAMIC_LINKING = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_BOOST)/bin CONAN_PROPERTY_BOOST_DYNAMIC_LINKING_CMAKE_TARGET_NAME = Boost::dynamic_linking # boost::headers CONAN_INCLUDE_DIRS_BOOST_HEADERS = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_BOOST)/include CONAN_BIN_DIRS_BOOST_HEADERS = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_BOOST)/bin CONAN_DEFINES_BOOST_HEADERS = \ $(CONAN_DEFINE_FLAG)BOOST_SYSTEM_NO_DEPRECATED \ $(CONAN_DEFINE_FLAG)BOOST_ASIO_NO_DEPRECATED \ $(CONAN_DEFINE_FLAG)BOOST_FILESYSTEM_NO_DEPRECATED \ $(CONAN_DEFINE_FLAG)BOOST_FILESYSTEM_VERSION=4 CONAN_REQUIRES_BOOST_HEADERS = \ diagnostic_definitions \ disable_autolinking \ dynamic_linking CONAN_PROPERTY_BOOST_HEADERS_CMAKE_TARGET_NAME = Boost::headers # boost::_boost_cmake CONAN_INCLUDE_DIRS_BOOST__BOOST_CMAKE = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_BOOST)/include CONAN_LIB_DIRS_BOOST__BOOST_CMAKE = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_BOOST)/lib CONAN_BIN_DIRS_BOOST__BOOST_CMAKE = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_BOOST)/bin CONAN_REQUIRES_BOOST__BOOST_CMAKE = headers CONAN_PROPERTY_BOOST__BOOST_CMAKE_CMAKE_TARGET_NAME = Boost::boost # boost::_libboost CONAN_INCLUDE_DIRS_BOOST__LIBBOOST = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_BOOST)/include CONAN_LIB_DIRS_BOOST__LIBBOOST = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_BOOST)/lib CONAN_BIN_DIRS_BOOST__LIBBOOST = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_BOOST)/bin CONAN_REQUIRES_BOOST__LIBBOOST = headers CONAN_SYSTEM_LIBS_BOOST__LIBBOOST = \ $(CONAN_SYSTEM_LIB_FLAG)rt \ $(CONAN_SYSTEM_LIB_FLAG)pthread # boost::atomic CONAN_INCLUDE_DIRS_BOOST_ATOMIC = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_BOOST)/include CONAN_LIB_DIRS_BOOST_ATOMIC = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_BOOST)/lib CONAN_BIN_DIRS_BOOST_ATOMIC = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_BOOST)/bin CONAN_LIBS_BOOST_ATOMIC = $(CONAN_LIB_FLAG)boost_atomic CONAN_REQUIRES_BOOST_ATOMIC = _libboost CONAN_PROPERTY_BOOST_ATOMIC_CMAKE_TARGET_NAME = Boost::atomic # boost::context CONAN_INCLUDE_DIRS_BOOST_CONTEXT = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_BOOST)/include CONAN_LIB_DIRS_BOOST_CONTEXT = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_BOOST)/lib CONAN_BIN_DIRS_BOOST_CONTEXT = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_BOOST)/bin CONAN_LIBS_BOOST_CONTEXT = $(CONAN_LIB_FLAG)boost_context CONAN_REQUIRES_BOOST_CONTEXT = _libboost CONAN_PROPERTY_BOOST_CONTEXT_CMAKE_TARGET_NAME = Boost::context # boost::date_time CONAN_INCLUDE_DIRS_BOOST_DATE_TIME = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_BOOST)/include CONAN_LIB_DIRS_BOOST_DATE_TIME = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_BOOST)/lib CONAN_BIN_DIRS_BOOST_DATE_TIME = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_BOOST)/bin CONAN_LIBS_BOOST_DATE_TIME = $(CONAN_LIB_FLAG)boost_date_time CONAN_REQUIRES_BOOST_DATE_TIME = _libboost CONAN_PROPERTY_BOOST_DATE_TIME_CMAKE_TARGET_NAME = Boost::date_time # boost::system CONAN_INCLUDE_DIRS_BOOST_SYSTEM = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_BOOST)/include CONAN_LIB_DIRS_BOOST_SYSTEM = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_BOOST)/lib CONAN_BIN_DIRS_BOOST_SYSTEM = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_BOOST)/bin CONAN_REQUIRES_BOOST_SYSTEM = _libboost CONAN_PROPERTY_BOOST_SYSTEM_CMAKE_TARGET_NAME = Boost::system # boost::filesystem CONAN_INCLUDE_DIRS_BOOST_FILESYSTEM = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_BOOST)/include CONAN_LIB_DIRS_BOOST_FILESYSTEM = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_BOOST)/lib CONAN_BIN_DIRS_BOOST_FILESYSTEM = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_BOOST)/bin CONAN_LIBS_BOOST_FILESYSTEM = $(CONAN_LIB_FLAG)boost_filesystem CONAN_REQUIRES_BOOST_FILESYSTEM = \ atomic \ system \ _libboost CONAN_PROPERTY_BOOST_FILESYSTEM_CMAKE_TARGET_NAME = Boost::filesystem # bshoshany-thread-pool/5.0.0 (indirect dependency) CONAN_NAME_BSHOSHANY_THREAD_POOL = bshoshany-thread-pool CONAN_VERSION_BSHOSHANY_THREAD_POOL = 5.0.0 CONAN_REFERENCE_BSHOSHANY_THREAD_POOL = bshoshany-thread-pool/5.0.0 CONAN_ROOT_BSHOSHANY_THREAD_POOL = /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/bshosf4c24b2e229ea/p CONAN_INCLUDE_DIRS_BSHOSHANY_THREAD_POOL = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_BSHOSHANY_THREAD_POOL)/include CONAN_SYSTEM_LIBS_BSHOSHANY_THREAD_POOL = $(CONAN_SYSTEM_LIB_FLAG)pthread # concurrentqueue/1.0.4 (indirect dependency) CONAN_NAME_CONCURRENTQUEUE = concurrentqueue CONAN_VERSION_CONCURRENTQUEUE = 1.0.4 CONAN_REFERENCE_CONCURRENTQUEUE = concurrentqueue/1.0.4 CONAN_ROOT_CONCURRENTQUEUE = /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/concu0e8c745f17630/p CONAN_INCLUDE_DIRS_CONCURRENTQUEUE = \ $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_CONCURRENTQUEUE)/include \ $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_CONCURRENTQUEUE)/include/moodycamel CONAN_SYSTEM_LIBS_CONCURRENTQUEUE = $(CONAN_SYSTEM_LIB_FLAG)pthread CONAN_PROPERTY_CONCURRENTQUEUE_CMAKE_FILE_NAME = concurrentqueue CONAN_PROPERTY_CONCURRENTQUEUE_CMAKE_TARGET_NAME = concurrentqueue::concurrentqueue # eigen/3.4.0 (indirect dependency) CONAN_NAME_EIGEN = eigen CONAN_VERSION_EIGEN = 3.4.0 CONAN_REFERENCE_EIGEN = eigen/3.4.0 CONAN_ROOT_EIGEN = /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/eigen3d88c0279cc26/p CONAN_INCLUDE_DIRS_EIGEN = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_EIGEN)/include CONAN_LIB_DIRS_EIGEN = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_EIGEN)/lib CONAN_BIN_DIRS_EIGEN = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_EIGEN)/bin CONAN_SYSTEM_LIBS_EIGEN = $(CONAN_SYSTEM_LIBS_EIGEN_EIGEN3) CONAN_COMPONENTS_EIGEN = eigen3 CONAN_PROPERTY_EIGEN_CMAKE_FILE_NAME = Eigen3 CONAN_PROPERTY_EIGEN_CMAKE_TARGET_NAME = Eigen3::Eigen CONAN_PROPERTY_EIGEN_PKG_CONFIG_NAME = eigen3 # eigen::eigen3 CONAN_INCLUDE_DIRS_EIGEN_EIGEN3 = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_EIGEN)/include/eigen3 CONAN_SYSTEM_LIBS_EIGEN_EIGEN3 = $(CONAN_SYSTEM_LIB_FLAG)m CONAN_PROPERTY_EIGEN_EIGEN3_CMAKE_TARGET_NAME = Eigen3::Eigen # fast_float/8.0.2 (indirect dependency) CONAN_NAME_FAST_FLOAT = fast_float CONAN_VERSION_FAST_FLOAT = 8.0.2 CONAN_REFERENCE_FAST_FLOAT = fast_float/8.0.2 CONAN_ROOT_FAST_FLOAT = /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/fast_d5df19a7e0cf9/p CONAN_INCLUDE_DIRS_FAST_FLOAT = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_FAST_FLOAT)/include CONAN_COMPONENTS_FAST_FLOAT = fastfloat CONAN_PROPERTY_FAST_FLOAT_CMAKE_FILE_NAME = FastFloat CONAN_PROPERTY_FAST_FLOAT_CMAKE_TARGET_NAME = FastFloat::fast_float # fast_float::fastfloat CONAN_INCLUDE_DIRS_FAST_FLOAT_FASTFLOAT = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_FAST_FLOAT)/include CONAN_PROPERTY_FAST_FLOAT_FASTFLOAT_CMAKE_TARGET_NAME = FastFloat::fast_float # highfive/2.10.0 (indirect dependency) CONAN_NAME_HIGHFIVE = highfive CONAN_VERSION_HIGHFIVE = 2.10.0 CONAN_REFERENCE_HIGHFIVE = highfive/2.10.0 CONAN_ROOT_HIGHFIVE = /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/highf4cda4c9fda75f/p CONAN_INCLUDE_DIRS_HIGHFIVE = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_HIGHFIVE)/include CONAN_REQUIRES_HIGHFIVE = hdf5::hdf5 CONAN_PROPERTY_HIGHFIVE_CMAKE_FILE_NAME = HighFive CONAN_PROPERTY_HIGHFIVE_CMAKE_TARGET_NAME = HighFive # hdf5/1.14.6 (indirect dependency) CONAN_NAME_HDF5 = hdf5 CONAN_VERSION_HDF5 = 1.14.6 CONAN_REFERENCE_HDF5 = hdf5/1.14.6 CONAN_ROOT_HDF5 = /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p CONAN_INCLUDE_DIRS_HDF5 = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_HDF5)/include CONAN_LIB_DIRS_HDF5 = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_HDF5)/lib CONAN_BIN_DIRS_HDF5 = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_HDF5)/bin CONAN_LIBS_HDF5 = $(CONAN_LIBS_HDF5_HDF5_C) CONAN_REQUIRES_HDF5 = $(CONAN_REQUIRES_HDF5_HDF5_C) CONAN_SYSTEM_LIBS_HDF5 = $(CONAN_SYSTEM_LIBS_HDF5_HDF5_C) CONAN_COMPONENTS_HDF5 = hdf5_c CONAN_PROPERTY_HDF5_CMAKE_FIND_MODE = both CONAN_PROPERTY_HDF5_CMAKE_FILE_NAME = HDF5 CONAN_PROPERTY_HDF5_CMAKE_TARGET_NAME = HDF5::HDF5 CONAN_PROPERTY_HDF5_PKG_CONFIG_NAME = hdf5-all-do-not-use CONAN_PROPERTY_HDF5_CMAKE_BUILD_MODULES = ['/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/hdf53261dd5255dc7/p/lib/cmake/conan-official-hdf5-variables.cmake'] # hdf5::hdf5_c CONAN_INCLUDE_DIRS_HDF5_HDF5_C = \ $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_HDF5)/include \ $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_HDF5)/include/hdf5 \ $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_HDF5)/include/hdf5 CONAN_LIB_DIRS_HDF5_HDF5_C = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_HDF5)/lib CONAN_BIN_DIRS_HDF5_HDF5_C = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_HDF5)/bin CONAN_LIBS_HDF5_HDF5_C = $(CONAN_LIB_FLAG)hdf5 CONAN_REQUIRES_HDF5_HDF5_C = zlib::zlib CONAN_SYSTEM_LIBS_HDF5_HDF5_C = \ $(CONAN_SYSTEM_LIB_FLAG)dl \ $(CONAN_SYSTEM_LIB_FLAG)m CONAN_PROPERTY_HDF5_HDF5_C_CMAKE_TARGET_NAME = hdf5::hdf5 CONAN_PROPERTY_HDF5_HDF5_C_PKG_CONFIG_NAME = hdf5 # zlib/1.3.1 (indirect dependency) CONAN_NAME_ZLIB = zlib CONAN_VERSION_ZLIB = 1.3.1 CONAN_REFERENCE_ZLIB = zlib/1.3.1 CONAN_ROOT_ZLIB = /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zlibf5aa86c47eb13/p CONAN_INCLUDE_DIRS_ZLIB = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_ZLIB)/include CONAN_LIB_DIRS_ZLIB = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_ZLIB)/lib CONAN_BIN_DIRS_ZLIB = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_ZLIB)/bin CONAN_LIBS_ZLIB = $(CONAN_LIB_FLAG)z CONAN_PROPERTY_ZLIB_CMAKE_FIND_MODE = both CONAN_PROPERTY_ZLIB_CMAKE_FILE_NAME = ZLIB CONAN_PROPERTY_ZLIB_CMAKE_TARGET_NAME = ZLIB::ZLIB CONAN_PROPERTY_ZLIB_PKG_CONFIG_NAME = zlib # libdeflate/1.23 (indirect dependency) CONAN_NAME_LIBDEFLATE = libdeflate CONAN_VERSION_LIBDEFLATE = 1.23 CONAN_REFERENCE_LIBDEFLATE = libdeflate/1.23 CONAN_ROOT_LIBDEFLATE = /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/libde05e01d234bdd5/p CONAN_INCLUDE_DIRS_LIBDEFLATE = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_LIBDEFLATE)/include CONAN_LIB_DIRS_LIBDEFLATE = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_LIBDEFLATE)/lib CONAN_BIN_DIRS_LIBDEFLATE = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_LIBDEFLATE)/bin CONAN_LIBS_LIBDEFLATE = $(CONAN_LIBS_LIBDEFLATE__LIBDEFLATE) CONAN_COMPONENTS_LIBDEFLATE = _libdeflate CONAN_PROPERTY_LIBDEFLATE_CMAKE_FILE_NAME = libdeflate CONAN_PROPERTY_LIBDEFLATE_CMAKE_TARGET_NAME = libdeflate::libdeflate_static CONAN_PROPERTY_LIBDEFLATE_CMAKE_TARGET_ALIASES = ['libdeflate::libdeflate'] CONAN_PROPERTY_LIBDEFLATE_PKG_CONFIG_NAME = libdeflate # libdeflate::_libdeflate CONAN_INCLUDE_DIRS_LIBDEFLATE__LIBDEFLATE = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_LIBDEFLATE)/include CONAN_LIB_DIRS_LIBDEFLATE__LIBDEFLATE = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_LIBDEFLATE)/lib CONAN_BIN_DIRS_LIBDEFLATE__LIBDEFLATE = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_LIBDEFLATE)/bin CONAN_LIBS_LIBDEFLATE__LIBDEFLATE = $(CONAN_LIB_FLAG)deflate CONAN_PROPERTY_LIBDEFLATE__LIBDEFLATE_CMAKE_TARGET_NAME = libdeflate::libdeflate_static CONAN_PROPERTY_LIBDEFLATE__LIBDEFLATE_PKG_CONFIG_NAME = libdeflate # parallel-hashmap/2.0.0 (indirect dependency) CONAN_NAME_PARALLEL_HASHMAP = parallel-hashmap CONAN_VERSION_PARALLEL_HASHMAP = 2.0.0 CONAN_REFERENCE_PARALLEL_HASHMAP = parallel-hashmap/2.0.0 CONAN_ROOT_PARALLEL_HASHMAP = /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/paral39ec75baf77f3/p CONAN_INCLUDE_DIRS_PARALLEL_HASHMAP = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_PARALLEL_HASHMAP)/include CONAN_PROPERTY_PARALLEL_HASHMAP_CMAKE_FILE_NAME = phmap CONAN_PROPERTY_PARALLEL_HASHMAP_CMAKE_TARGET_NAME = phmap # readerwriterqueue/1.0.6 (indirect dependency) CONAN_NAME_READERWRITERQUEUE = readerwriterqueue CONAN_VERSION_READERWRITERQUEUE = 1.0.6 CONAN_REFERENCE_READERWRITERQUEUE = readerwriterqueue/1.0.6 CONAN_ROOT_READERWRITERQUEUE = /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/reade50dacf22d86c8/p CONAN_INCLUDE_DIRS_READERWRITERQUEUE = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_READERWRITERQUEUE)/include CONAN_SYSTEM_LIBS_READERWRITERQUEUE = $(CONAN_SYSTEM_LIB_FLAG)pthread # span-lite/0.11.0 (indirect dependency) CONAN_NAME_SPAN_LITE = span-lite CONAN_VERSION_SPAN_LITE = 0.11.0 CONAN_REFERENCE_SPAN_LITE = span-lite/0.11.0 CONAN_ROOT_SPAN_LITE = /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/span-484170b3e63a0/p CONAN_INCLUDE_DIRS_SPAN_LITE = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_SPAN_LITE)/include CONAN_BIN_DIRS_SPAN_LITE = $(CONAN_BIN_DIRS_SPAN_LITE_SPANLITE) CONAN_COMPONENTS_SPAN_LITE = spanlite CONAN_PROPERTY_SPAN_LITE_CMAKE_FILE_NAME = span-lite CONAN_PROPERTY_SPAN_LITE_CMAKE_TARGET_NAME = nonstd::span-lite # span-lite::spanlite CONAN_INCLUDE_DIRS_SPAN_LITE_SPANLITE = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_SPAN_LITE)/include CONAN_BIN_DIRS_SPAN_LITE_SPANLITE = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_SPAN_LITE)/bin CONAN_PROPERTY_SPAN_LITE_SPANLITE_CMAKE_TARGET_NAME = nonstd::span-lite # spdlog/1.15.3 (indirect dependency) CONAN_NAME_SPDLOG = spdlog CONAN_VERSION_SPDLOG = 1.15.3 CONAN_REFERENCE_SPDLOG = spdlog/1.15.3 CONAN_ROOT_SPDLOG = /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/spdlo4ef47a933caac/p CONAN_INCLUDE_DIRS_SPDLOG = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_SPDLOG)/include CONAN_LIB_DIRS_SPDLOG = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_SPDLOG)/lib CONAN_BIN_DIRS_SPDLOG = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_SPDLOG)/bin CONAN_DEFINES_SPDLOG = $(CONAN_DEFINES_SPDLOG_LIBSPDLOG) CONAN_REQUIRES_SPDLOG = $(CONAN_REQUIRES_SPDLOG_LIBSPDLOG) CONAN_SYSTEM_LIBS_SPDLOG = $(CONAN_SYSTEM_LIBS_SPDLOG_LIBSPDLOG) CONAN_COMPONENTS_SPDLOG = libspdlog CONAN_PROPERTY_SPDLOG_CMAKE_FILE_NAME = spdlog CONAN_PROPERTY_SPDLOG_CMAKE_TARGET_NAME = spdlog::spdlog_header_only CONAN_PROPERTY_SPDLOG_PKG_CONFIG_NAME = spdlog # spdlog::libspdlog CONAN_INCLUDE_DIRS_SPDLOG_LIBSPDLOG = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_SPDLOG)/include CONAN_BIN_DIRS_SPDLOG_LIBSPDLOG = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_SPDLOG)/bin CONAN_DEFINES_SPDLOG_LIBSPDLOG = $(CONAN_DEFINE_FLAG)SPDLOG_FMT_EXTERNAL CONAN_REQUIRES_SPDLOG_LIBSPDLOG = fmt::fmt CONAN_SYSTEM_LIBS_SPDLOG_LIBSPDLOG = $(CONAN_SYSTEM_LIB_FLAG)pthread CONAN_PROPERTY_SPDLOG_LIBSPDLOG_CMAKE_TARGET_NAME = spdlog::spdlog_header_only # fmt/11.2.0 (indirect dependency) CONAN_NAME_FMT = fmt CONAN_VERSION_FMT = 11.2.0 CONAN_REFERENCE_FMT = fmt/11.2.0 CONAN_ROOT_FMT = /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/fmt56da882bfd5e6/p CONAN_INCLUDE_DIRS_FMT = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_FMT)/include CONAN_LIB_DIRS_FMT = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_FMT)/lib CONAN_BIN_DIRS_FMT = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_FMT)/bin CONAN_DEFINES_FMT = $(CONAN_DEFINES_FMT__FMT) CONAN_COMPONENTS_FMT = _fmt CONAN_PROPERTY_FMT_CMAKE_FILE_NAME = fmt CONAN_PROPERTY_FMT_CMAKE_TARGET_NAME = fmt::fmt-header-only CONAN_PROPERTY_FMT_CMAKE_CONFIG_VERSION_COMPAT = AnyNewerVersion CONAN_PROPERTY_FMT_PKG_CONFIG_NAME = fmt # fmt::_fmt CONAN_INCLUDE_DIRS_FMT__FMT = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_FMT)/include CONAN_DEFINES_FMT__FMT = $(CONAN_DEFINE_FLAG)FMT_HEADER_ONLY=1 CONAN_PROPERTY_FMT__FMT_CMAKE_TARGET_NAME = fmt::fmt-header-only # zstd/1.5.7 (indirect dependency) CONAN_NAME_ZSTD = zstd CONAN_VERSION_ZSTD = 1.5.7 CONAN_REFERENCE_ZSTD = zstd/1.5.7 CONAN_ROOT_ZSTD = /srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/00_pkg_src/hictkR/scratch/tmp/.conan2/p/b/zstded8954ea1191c/p CONAN_INCLUDE_DIRS_ZSTD = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_ZSTD)/include CONAN_LIB_DIRS_ZSTD = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_ZSTD)/lib CONAN_BIN_DIRS_ZSTD = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_ZSTD)/bin CONAN_LIBS_ZSTD = $(CONAN_LIBS_ZSTD_ZSTDLIB) CONAN_SYSTEM_LIBS_ZSTD = $(CONAN_SYSTEM_LIBS_ZSTD_ZSTDLIB) CONAN_COMPONENTS_ZSTD = zstdlib CONAN_PROPERTY_ZSTD_CMAKE_FILE_NAME = zstd CONAN_PROPERTY_ZSTD_CMAKE_TARGET_NAME = zstd::libzstd_static CONAN_PROPERTY_ZSTD_PKG_CONFIG_NAME = libzstd # zstd::zstdlib CONAN_INCLUDE_DIRS_ZSTD_ZSTDLIB = $(CONAN_INCLUDE_DIR_FLAG)$(CONAN_ROOT_ZSTD)/include CONAN_LIB_DIRS_ZSTD_ZSTDLIB = $(CONAN_LIB_DIR_FLAG)$(CONAN_ROOT_ZSTD)/lib CONAN_BIN_DIRS_ZSTD_ZSTDLIB = $(CONAN_BIN_DIR_FLAG)$(CONAN_ROOT_ZSTD)/bin CONAN_LIBS_ZSTD_ZSTDLIB = $(CONAN_LIB_FLAG)zstd CONAN_SYSTEM_LIBS_ZSTD_ZSTDLIB = $(CONAN_SYSTEM_LIB_FLAG)pthread CONAN_PROPERTY_ZSTD_ZSTDLIB_CMAKE_TARGET_NAME = zstd::libzstd_static CONAN_PROPERTY_ZSTD_ZSTDLIB_PKG_CONFIG_NAME = libzstd # Aggregated global variables CONAN_INCLUDE_DIRS = \ $(CONAN_INCLUDE_DIRS_HICTK) \ $(CONAN_INCLUDE_DIRS_ARROW) \ $(CONAN_INCLUDE_DIRS_MIMALLOC) \ $(CONAN_INCLUDE_DIRS_RE2) \ $(CONAN_INCLUDE_DIRS_BOOST) \ $(CONAN_INCLUDE_DIRS_BSHOSHANY_THREAD_POOL) \ $(CONAN_INCLUDE_DIRS_CONCURRENTQUEUE) \ $(CONAN_INCLUDE_DIRS_EIGEN) \ $(CONAN_INCLUDE_DIRS_FAST_FLOAT) \ $(CONAN_INCLUDE_DIRS_HIGHFIVE) \ $(CONAN_INCLUDE_DIRS_HDF5) \ $(CONAN_INCLUDE_DIRS_ZLIB) \ $(CONAN_INCLUDE_DIRS_LIBDEFLATE) \ $(CONAN_INCLUDE_DIRS_PARALLEL_HASHMAP) \ $(CONAN_INCLUDE_DIRS_READERWRITERQUEUE) \ $(CONAN_INCLUDE_DIRS_SPAN_LITE) \ $(CONAN_INCLUDE_DIRS_SPDLOG) \ $(CONAN_INCLUDE_DIRS_FMT) \ $(CONAN_INCLUDE_DIRS_ZSTD) CONAN_LIB_DIRS = \ $(CONAN_LIB_DIRS_ARROW) \ $(CONAN_LIB_DIRS_MIMALLOC) \ $(CONAN_LIB_DIRS_RE2) \ $(CONAN_LIB_DIRS_BOOST) \ $(CONAN_LIB_DIRS_EIGEN) \ $(CONAN_LIB_DIRS_HDF5) \ $(CONAN_LIB_DIRS_ZLIB) \ $(CONAN_LIB_DIRS_LIBDEFLATE) \ $(CONAN_LIB_DIRS_SPDLOG) \ $(CONAN_LIB_DIRS_FMT) \ $(CONAN_LIB_DIRS_ZSTD) CONAN_BIN_DIRS = \ $(CONAN_BIN_DIRS_ARROW) \ $(CONAN_BIN_DIRS_MIMALLOC) \ $(CONAN_BIN_DIRS_RE2) \ $(CONAN_BIN_DIRS_BOOST) \ $(CONAN_BIN_DIRS_EIGEN) \ $(CONAN_BIN_DIRS_HDF5) \ $(CONAN_BIN_DIRS_ZLIB) \ $(CONAN_BIN_DIRS_LIBDEFLATE) \ $(CONAN_BIN_DIRS_SPAN_LITE) \ $(CONAN_BIN_DIRS_SPDLOG) \ $(CONAN_BIN_DIRS_FMT) \ $(CONAN_BIN_DIRS_ZSTD) CONAN_LIBS = \ $(CONAN_LIBS_ARROW) \ $(CONAN_LIBS_MIMALLOC) \ $(CONAN_LIBS_RE2) \ $(CONAN_LIBS_BOOST) \ $(CONAN_LIBS_HDF5) \ $(CONAN_LIBS_ZLIB) \ $(CONAN_LIBS_LIBDEFLATE) \ $(CONAN_LIBS_ZSTD) CONAN_DEFINES = \ $(CONAN_DEFINES_HICTK) \ $(CONAN_DEFINES_ARROW) \ $(CONAN_DEFINES_BOOST) \ $(CONAN_DEFINES_SPDLOG) \ $(CONAN_DEFINES_FMT) CONAN_REQUIRES = \ $(CONAN_REQUIRES_ARROW) \ $(CONAN_REQUIRES_BOOST) \ $(CONAN_REQUIRES_HIGHFIVE) \ $(CONAN_REQUIRES_HDF5) \ $(CONAN_REQUIRES_SPDLOG) CONAN_SYSTEM_LIBS = \ $(CONAN_SYSTEM_LIBS_ARROW) \ $(CONAN_SYSTEM_LIBS_MIMALLOC) \ $(CONAN_SYSTEM_LIBS_RE2) \ $(CONAN_SYSTEM_LIBS_BOOST) \ $(CONAN_SYSTEM_LIBS_BSHOSHANY_THREAD_POOL) \ $(CONAN_SYSTEM_LIBS_CONCURRENTQUEUE) \ $(CONAN_SYSTEM_LIBS_EIGEN) \ $(CONAN_SYSTEM_LIBS_HDF5) \ $(CONAN_SYSTEM_LIBS_READERWRITERQUEUE) \ $(CONAN_SYSTEM_LIBS_SPDLOG) \ $(CONAN_SYSTEM_LIBS_ZSTD) ### END OF conandeps.mk CXX_STD = CXX17 PKG_CPPFLAGS += $(addprefix -isystem ,$(CONAN_INCLUDE_DIRS)) PKG_CPPFLAGS += $(addprefix -D ,$(CONAN_DEFINES)) PKG_CPPFLAGS += WARNING: ignoring environment value of R_HOME -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include PKG_LIBS += $(addprefix -L ,$(CONAN_LIB_DIRS)) PKG_LIBS += $(addprefix -l ,$(CONAN_LIBS)) PKG_LIBS += $(addprefix -l ,$(CONAN_SYSTEM_LIBS)) PKG_CPPFLAGS += $(addprefix -isystem ,$(CONAN_INCLUDE_DIRS_HDF5_HDF5_C)) PKG_LIBS += -Wl,--strip-debug ### END Makevars ** libs Makevars:804: *** missing separator. Stop. Warning in system(paste(MAKE, p1(paste("-f", shQuote(makefiles))), "compilers"), : running command 'make -f 'Makevars' -f '/home/hornik/tmp/R/etc/Makeconf' -f '/home/hornik/tmp/R/share/make/shlib.mk' -f '/home/hornik/.R/Makevars-clang' compilers' had status 2 Calls: ... do_install_source -> run_shlib -> .shlib_internal -> system Error in if (nzchar(cxx)) { : argument is of length zero * removing ‘/srv/hornik/tmp/CRAN_pretest/hictkR.Rcheck/hictkR’