* using log directory ‘/srv/hornik/tmp/CRAN_pretest/heterocop.Rcheck’
* using R Under development (unstable) (2024-10-28 r87274)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.1 (1)
    Debian flang-new version 19.1.1 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘heterocop/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘heterocop’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/5s] NOTE
Maintainer: ‘Ekaterina Tomilina <ekaterina.tomilina@inrae.fr>’

New submission

Possibly misspelled words in DESCRIPTION:
  independencies (7:187)

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Julie",
                      family = "Cartier",
                      role = "aut"),
               person(given = "Florence",
                      family = "Jaffrezic",
                      role = "aut"),
               person(given = "Gildas",
                      family = "Mazo",
                      role = "aut"),
               person(given = "Ekaterina",
                      family = "Tomilina",
                      role = c("aut", "cre"),
                      email = "ekaterina.tomilina@inrae.fr"))
as necessary.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘heterocop’ can be installed ... [1s/1s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘doSNOW’
A package should be listed in only one of these fields.
* checking top-level files ... NOTE
Non-standard files/directories found at top level:
  ‘README_files’ ‘biblio.bib’ ‘test.txt’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [2s/2s] NOTE
rho_estim: no visible global function definition for ‘txtProgressBar’
rho_estim : progress: no visible global function definition for
  ‘setTxtProgressBar’
Undefined global functions or variables:
  setTxtProgressBar txtProgressBar
Consider adding
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'cor_network_graph.Rd':
  \examples lines wider than 100 characters:
     data <- CopulaSim(20,R,c(rep("qnorm(0,1)",6),rep("qexp(0.5)",4),rep("qbinom(4,0.8)",2)),random=FALSE)[[1]]
     cor_network_graph(R,TS=0.3,binary=TRUE,legend=c(rep("Normal",6),rep("Exponential",4),rep("Binomial",2)))

Rd file 'rho_estim.Rd':
  \examples lines wider than 100 characters:
     data <- CopulaSim(20,M,c(rep("qnorm(0,1)",6),rep("qexp(0.5)",4),rep("qbinom(4,0.8)",2)),random=FALSE)[[1]]

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/1s] ERROR
Running examples in ‘heterocop-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: rho_estim
> ### Title: rho_estim
> ### Aliases: rho_estim
> 
> ### ** Examples
> 
> M <- diag_block_matrix(c(3,4,5),c(0.7,0.8,0.2))
> data <- CopulaSim(20,M,c(rep("qnorm(0,1)",6),rep("qexp(0.5)",4),rep("qbinom(4,0.8)",2)),random=FALSE)[[1]]
> rho_estim(data,c(rep("C",10),rep("D",2)))
Error in .check_ncores(length(names)) : 31 simultaneous processes spawned
Calls: rho_estim -> <Anonymous> -> makePSOCKcluster -> .check_ncores
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [1s/1s] ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘heterocop.Rmd’ using rmarkdown

Quitting from lines 40-42 [unnamed-chunk-2] (heterocop.Rmd)
Error: processing vignette 'heterocop.Rmd' failed with diagnostics:
31 simultaneous processes spawned
--- failed re-building ‘heterocop.Rmd’

SUMMARY: processing the following file failed:
  ‘heterocop.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [3s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 ERRORs, 5 NOTEs