* using log directory ‘/srv/hornik/tmp/CRAN/hesim.Rcheck’
* using R Under development (unstable) (2024-02-09 r85879)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (5)
    Debian flang-new version 17.0.6 (5)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘hesim/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘hesim’ version ‘0.5.4’
* checking CRAN incoming feasibility ... [5s/7s] Note_to_CRAN_maintainers
Maintainer: ‘Devin Incerti <devin.incerti@gmail.com>’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘hesim’ can be installed ... [129s/129s] OK
* used C++ compiler: ‘Debian clang version 17.0.6 (5)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Mismatches for apparent methods not registered:
create_StateVals:
  function(object, ...)
create_StateVals.eval_model:
  function(object, cost, name, init_args)

check:
  function(object, ...)
check.params_lm:
  function(object)

check:
  function(object, ...)
check.params_surv:
  function(object)

check:
  function(object, ...)
check.eval_model:
  function(x)

check:
  function(object, ...)
check.hesim_data:
  function(x)

check:
  function(object, ...)
check.input_mats:
  function(object)

check:
  function(object, ...)
check.tparams_transprobs:
  function(object)

check:
  function(object, ...)
check.id_attributes:
  function(object)

check:
  function(object, ...)
check.params_mlogit:
  function(object)

check:
  function(object, ...)
check.eval_rng:
  function(object)

check:
  function(object, ...)
check.coeflist:
  function(coefs)

check:
  function(object, ...)
check.params_surv_list:
  function(object)

check:
  function(object, ...)
check.model_def:
  function(x)

new_tparams_transprobs:
  function(object, ...)
new_tparams_transprobs.data.table:
  function(object)

new_tparams_transprobs:
  function(object, ...)
new_tparams_transprobs.array:
  function(object, tpmatrix_id, times, grp_id, patient_wt)

Apparent methods for exported generics not registered:
  create_StateVals.eval_model plot_ceac.default sim_ev.NULL
  tparams_transprobs.eval_model
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [9s/9s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [14s/14s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [17s/17s] OK
  Running ‘testthat.R’ [17s/17s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [85s/85s] OK
* checking PDF version of manual ... [5s/5s] OK
* checking HTML version of manual ... [3s/3s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE