* using log directory ‘/srv/hornik/tmp/CRAN_pretest/henna.Rcheck’ * using R Under development (unstable) (2025-09-04 r88794) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (3+b1) Debian flang-new version 19.1.7 (3+b1) * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * checking for file ‘henna/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘henna’ version ‘0.1.5’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/4s] NOTE Maintainer: ‘Andrei-Florian Stoica ’ New submission Possibly misspelled words in DESCRIPTION: scRNA (3:34, 11:9) The Title field should be in title case. Current version is: ‘A visualization suite for scRNA-seq analysis and other applications’ In title case that is: ‘A Visualization Suite for scRNA-Seq Analysis and Other Applications’ The Description field should not start with the package name, 'This package' or similar. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘henna’ can be installed ... [4s/4s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [6s/6s] NOTE densityPlot: no visible binding for global variable ‘x’ densityPlot: no visible binding for global variable ‘y’ densityPlot: no visible binding for global variable ‘xend’ densityPlot: no visible binding for global variable ‘yend’ hullPlot: no visible binding for global variable ‘x’ hullPlot: no visible binding for global variable ‘y’ hullPlot: no visible binding for global variable ‘xEnd’ hullPlot: no visible binding for global variable ‘yEnd’ networkPlot: no visible binding for global variable ‘weight’ networkPlot: no visible binding for global variable ‘component’ networkPlot: no visible binding for global variable ‘name’ radialPlot: no visible binding for global variable ‘x’ radialPlot: no visible binding for global variable ‘y’ radialPlot: no visible binding for global variable ‘r’ radialPlot: no visible binding for global variable ‘Degree’ rankPlot: no visible binding for global variable ‘Item’ rankPlot: no visible binding for global variable ‘MeanRank’ riverPlot: no visible binding for global variable ‘stratum’ splitHull: no visible binding for global variable ‘x’ splitHull: no visible binding for global variable ‘y’ splitInFour: no visible binding for global variable ‘x’ splitInFour: no visible binding for global variable ‘y’ splitInTwo: no visible binding for global variable ‘x’ splitInTwo: no visible binding for global variable ‘y’ Undefined global functions or variables: Degree Item MeanRank component name r stratum weight x xEnd xend y yEnd yend * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [4s/4s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [2s/2s] OK Running ‘testthat.R’ [1s/1s] * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 NOTEs