* using log directory ‘/srv/hornik/tmp/CRAN/healthprediction.Rcheck’
* using R Under development (unstable) (2024-04-24 r86484)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (5)
    Debian flang-new version 17.0.6 (5)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘healthprediction/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘healthprediction’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [2s/3s] NOTE
Maintainer: ‘Neha Dhake <nehadhake@usf.edu>’

New submission

Possibly misspelled words in DESCRIPTION:
  careplan (8:157)
  datapoint (10:72)
  diabeties (7:96)

The Title field should be in title case. Current version is:
‘builds and runs prediction of health data’
In title case that is:
‘Builds and Runs Prediction of Health Data’

The Description field should not start with the package name,
  'This package' or similar.
* checking package namespace information ... NOTE
Found export directive that requires package ‘methods’:
  ‘exportMethods’
Remove all such namespace directives (if obsolete) or ensure that the
DESCRIPTION Depends or Imports field contains ‘methods’.
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘healthprediction’ can be installed ... [4s/4s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard files/directories found at top level:
  ‘HealthPrediction.pdf’ ‘Main.R’ ‘Markdown.Rmd’ ‘Markdown.html’
  ‘Markdown.log’ ‘Markdown.tex’ ‘boxplot.jpeg’ ‘boxplotA-All.jpeg’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
package 'methods' is used but not declared
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [3s/3s] NOTE
generate_output_file,data.frame-data.frame-character-character-character-logical:
  no visible binding for global variable ‘Diabetes_binary’
generate_output_file,data.frame-data.frame-character-character-character-logical:
  no visible binding for global variable ‘Percentage’
Undefined global functions or variables:
  Diabetes_binary Percentage
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘Prediction_data’ ‘Training_data’ ‘output’
Undocumented data sets:
  ‘Prediction_data’ ‘Training_data’ ‘output’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [1s/1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [1s/1s] ERROR
Running examples in ‘healthprediction-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: runprediction
> ### Title: This function orchestrates a prediction pipeline that includes
> ###   reading and cleaning datasets, building a model, making predictions,
> ###   calculating accuracy, and generating output files.
> ### Aliases: runprediction
> ###   runprediction,character,character,character,character,character,character,character-method
> 
> ### ** Examples
> 
> # Assuming the appropriate CSV files and column names are provided:
> runprediction("path/to/training_data.csv", "path/to/prediction_data.csv",
+               columns = c("ID", "Age", "BloodPressure", "Diabetes_binary"),
+               d_column = "Diabetes_binary",
+               m_columns = c("Age", "BloodPressure"),
+               xAxis_column = "Age",
+               xAxis_columnlabel = c("20-30", "31-40", "41-50"))
Error in read_validate_clean_dataset(model_filepath, columns) : 
  File does not exist:path/to/training_data.csv
Calls: runprediction ... read_validate_clean_dataset -> read_validate_clean_dataset
Execution halted
* checking PDF version of manual ... [3s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 5 NOTEs