* using log directory ‘/srv/hornik/tmp/CRAN_pretest/hdrm.Rcheck’ * using R Under development (unstable) (2025-09-23 r88869) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (3+b1) Debian flang-new version 19.1.7 (3+b1) * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * checking for file ‘hdrm/DESCRIPTION’ ... OK * this is package ‘hdrm’ version ‘1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/4s] NOTE Maintainer: ‘Nils Hichert ’ New submission * checking package namespace information ... OK * checking package dependencies ... INFO Package in Depends/Imports which should probably only be in LinkingTo: ‘RcppArmadillo’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘hdrm’ can be installed ... [17s/17s] WARNING Found the following significant warnings: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages] See ‘/srv/hornik/tmp/CRAN_pretest/hdrm.Rcheck/00install.out’ for details. * used C++ compiler: ‘Debian clang version 19.1.7 (3+b2)’ * checking C++ specification ... NOTE Specified C++11: please drop specification unless essential * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE Non-standard files/directories found at top level: ‘2d-materials.csl’ ‘examples’ * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s/3s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE Documented arguments not in \usage in Rd file 'hdrm_grouped_eq_cov_internal.Rd': ‘subject’ ‘subsampling’ Documented arguments not in \usage in Rd file 'hdrm_grouped_internal.Rd': ‘subject’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... [1s/1s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [5s/5s] ERROR Running ‘testthat.R’ [5s/5s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(hdrm) > > test_check("hdrm") [ FAIL 17 | WARN 0 | SKIP 0 | PASS 176 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-hdrm_grouped.R:870:3'): hdrm_grouped f ─────────────────────── ...$f (`actual`) not equal to 1.68699687 (`expected`). `actual`: 1.666 `expected`: 1.687 ── Failure ('test-hdrm_grouped.R:1627:3'): hdrm_grouped test statistics ──────── ...$statistic (`actual`) not equal to 0.841567185 (`expected`). `actual`: 0.84118 `expected`: 0.84157 ── Failure ('test-hdrm_grouped.R:1679:3'): hdrm_grouped p.value ──────────────── ...$p.value (`actual`) not equal to 0.180241264 (`expected`). `actual`: 0.17970 `expected`: 0.18024 ── Failure ('test-hdrm_grouped.R:1707:3'): hdrm_grouped p.value ──────────────── ...$p.value (`actual`) not equal to 0.022748138 (`expected`). `actual`: 0.02289 `expected`: 0.02275 ── Failure ('test-hdrm_grouped.R:1721:3'): hdrm_grouped p.value ──────────────── ...$p.value (`actual`) not equal to 0.03141055 (`expected`). `actual`: 0.03156 `expected`: 0.03141 ── Failure ('test-hdrm_grouped.R:1749:3'): hdrm_grouped p.value ──────────────── ...$p.value (`actual`) not equal to 0.160879089 (`expected`). `actual`: 0.16119 `expected`: 0.16088 ── Failure ('test-hdrm_grouped.R:1763:3'): hdrm_grouped p.value ──────────────── ...$p.value (`actual`) not equal to 0.160879089 (`expected`). `actual`: 0.16119 `expected`: 0.16088 ── Failure ('test-hdrm_grouped.R:1778:3'): hdrm_grouped p.value ──────────────── ...$p.value (`actual`) not equal to 0.180241264 (`expected`). `actual`: 0.17970 `expected`: 0.18024 ── Failure ('test-hdrm_grouped.R:1793:3'): hdrm_grouped p.value ──────────────── ...$p.value (`actual`) not equal to 0.184825068 (`expected`). `actual`: 0.18482428 `expected`: 0.18482507 ── Failure ('test-hdrm_grouped.R:1813:3'): hdrm_grouped f ────────────────────── ...$f (`actual`) not equal to 3.49425193 (`expected`). `actual`: 3.401 `expected`: 3.494 ── Failure ('test-hdrm_grouped.R:1827:3'): hdrm_grouped f ────────────────────── ...$f (`actual`) not equal to 1.30419398 (`expected`). `actual`: 1.289 `expected`: 1.304 ── Failure ('test-hdrm_grouped.R:1841:3'): hdrm_grouped f ────────────────────── ...$f (`actual`) not equal to 3.73918263 (`expected`). `actual`: 3.658 `expected`: 3.739 ── Failure ('test-hdrm_grouped.R:1855:3'): hdrm_grouped f ────────────────────── ...$f (`actual`) not equal to 3.675343 (`expected`). `actual`: 3.591 `expected`: 3.675 ── Failure ('test-hdrm_grouped.R:1869:3'): hdrm_grouped f ────────────────────── ...$f (`actual`) not equal to 4.68698151 (`expected`). `actual`: 4.59 `expected`: 4.69 ── Failure ('test-hdrm_grouped.R:1883:3'): hdrm_grouped f ────────────────────── ...$f (`actual`) not equal to 2.20681838 (`expected`). `actual`: 2.231 `expected`: 2.207 ── Failure ('test-hdrm_grouped.R:1897:3'): hdrm_grouped f ────────────────────── ...$f (`actual`) not equal to 3.49425193 (`expected`). `actual`: 3.401 `expected`: 3.494 ── Failure ('test-hdrm_grouped.R:1912:3'): hdrm_grouped f ────────────────────── ...$f (`actual`) not equal to 1.6660986 (`expected`). `actual`: 1.666061 `expected`: 1.666099 [ FAIL 17 | WARN 0 | SKIP 0 | PASS 176 ] Error: Test failures Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 WARNING, 4 NOTEs