* using log directory ‘/srv/hornik/tmp/CRAN/hdmed.Rcheck’
* using R Under development (unstable) (2024-01-29 r85841)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (5)
    Debian flang-new version 17.0.6 (5)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘hdmed/DESCRIPTION’ ... OK
* this is package ‘hdmed’ version ‘1.0.1’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/64s] NOTE
Maintainer: ‘Dylan Clark-Boucher <dclarkboucher@fas.harvard.edu>’

Found the following (possibly) invalid URLs:
  URL: https://rdrr.io/github/zhaoyi1026/spcma
    From: man/mediate_pcma.Rd
          man/mediate_spcma.Rd
    Status: Error
    Message: Operation timed out after 60002 milliseconds with 0 bytes received
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘hdmed’ can be installed ... [7s/7s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s/11s] OK
* checking Rd files ... [0s/0s] NOTE
checkRd: (-1) mediate_bslmm.Rd:65-67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_bslmm.Rd:68-69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_hdma.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_hdma.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_hdmm.Rd:65-66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_hdmm.Rd:67-68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_hdmm.Rd:69-70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_hima.Rd:46-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_hima.Rd:48-49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_medfix.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_medfix.Rd:54-55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_pcma.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_pcma.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_pcma.Rd:56-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_pcma.Rd:58-59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_plasso.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_plasso.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_plasso.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_plasso.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_plasso.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_spcma.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_spcma.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_spcma.Rd:82-83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mediate_spcma.Rd:84-85: Lost braces in \itemize; \value handles \item{}{} directly
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [9s/9s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 NOTEs