* installing *source* package 'hdflex' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
using C++ compiler: 'g++.exe (GCC) 13.2.0'
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -fopenmp    -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -fopenmp    -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c dsc.cpp -o dsc.o
dsc.cpp: In function 'arma::field<arma::field<arma::Row<double> > > dsc_init(int, int, int)':
dsc.cpp:21:34: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
   21 |       for (unsigned int i = 0; i < n_gamma; ++i) {
      |                                ~~^~~~~~~~~
dsc.cpp: In function 'void dsc_score_cands(arma::rowvec&, double, const arma::rowvec&, const arma::rowvec&, double, int, double, double, double)':
dsc.cpp:108:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
  108 |       for (unsigned int i=0; i<n_cands; i++) {
      |                              ~^~~~~~~~
dsc.cpp: In function 'void dsc_score_comb(arma::rowvec&, double, const arma::rowvec&, const arma::rowvec&, double, int, double, double, double)':
dsc.cpp:224:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
  224 |       for (unsigned int i=0; i<n_combs; i++) {
      |                              ~^~~~~~~~
dsc.cpp: In function 'arma::field<arma::Row<double> > dsc_loop(arma::field<arma::Row<double> >&, arma::rowvec&, arma::rowvec, arma::irowvec, double, const arma::rowvec&, const arma::rowvec&, double, int, bool, arma::uvec, double, double, double)':
dsc.cpp:366:35: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'const int' [-Wsign-compare]
  366 |             if (active_idx.n_elem > psi_max) {
      |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~
dsc.cpp: In function 'Rcpp::List dsc_(const arma::vec&, const arma::mat&, const arma::mat&, arma::rowvec, arma::irowvec, double, int, int, int, bool, Rcpp::Nullable<Rcpp::Vector<13> >, Rcpp::Nullable<Rcpp::Vector<14, Rcpp::PreserveStorage> >)':
dsc.cpp:538:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
  538 |       for (unsigned int t=0; t<tlength; t++ ) {
      |                              ~^~~~~~~~
dsc.cpp:546:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  546 |          if (t == (burn_in-1)) {
      |              ~~^~~~~~~~~~~~~~
dsc.cpp:558:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  558 |          if (t == (burn_in_dsc-1)) {
      |              ~~^~~~~~~~~~~~~~~~~~
gcc  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c init.c -o init.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -fopenmp    -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c stsc.cpp -o stsc.o
stsc.cpp: In function 'Rcpp::List init_tvc_(const arma::vec&, const arma::mat&, int, int, arma::vec, arma::vec, bool)':
stsc.cpp:33:43: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
   33 |                for (unsigned int j = 0; j < n_signal; j++) {
      |                                         ~~^~~~~~~~~~
stsc.cpp:68:24: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
   68 |                   if(j < n_raw_sig) {
      |                      ~~^~~~~~~~~~~
stsc.cpp: In function 'arma::field<arma::field<arma::Row<double> > > dsc_init_(int, int, int, arma::uvec)':
stsc.cpp:249:34: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  249 |       for (unsigned int i = 0; i < n_gamma; ++i) {
      |                                ~~^~~~~~~~~
stsc.cpp: In function 'void dsc_score_cands_(arma::rowvec&, double, const arma::rowvec&, const arma::rowvec&, double, int, double, double, double)':
stsc.cpp:344:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
  344 |       for (unsigned int i=0; i<n_cands; i++) {
      |                              ~^~~~~~~~
stsc.cpp: In function 'void dsc_score_comb_(arma::rowvec&, double, const arma::rowvec&, const arma::rowvec&, double, int, double, double, double)':
stsc.cpp:466:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
  466 |       for (unsigned int i=0; i<n_combs; i++) {
      |                              ~^~~~~~~~
stsc.cpp: In function 'arma::field<arma::Row<double> > dsc_loop_(arma::field<arma::Row<double> >&, arma::rowvec&, arma::rowvec, arma::irowvec, double, const arma::rowvec&, const arma::rowvec&, double, int, bool, arma::uvec, double, double, double)':
stsc.cpp:612:35: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'const int' [-Wsign-compare]
  612 |             if (active_idx.n_elem > psi_max) {
      |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~
stsc.cpp: In function 'Rcpp::List stsc_loop_(const arma::vec&, Rcpp::Nullable<const Rcpp::Matrix<14>&>, Rcpp::Nullable<const Rcpp::Matrix<14>&>, int, arma::vec, arma::vec, bool, arma::rowvec, arma::irowvec, double, int, int, int, bool, Rcpp::Nullable<Rcpp::Vector<13> >, Rcpp::Nullable<Rcpp::Vector<14, Rcpp::PreserveStorage> >)':
stsc.cpp:868:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  868 |       for (unsigned int t=0; t<(tlength-1); t++ ) {
      |                              ~^~~~~~~~~~~~
stsc.cpp:906:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  906 |          if (t == (burn_in-1)) {
      |              ~~^~~~~~~~~~~~~~
stsc.cpp:918:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  918 |          if (t == (burn_in_dsc-1)) {
      |              ~~^~~~~~~~~~~~~~~~~~
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -fopenmp    -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c stsc_parallel.cpp -o stsc_parallel.o
stsc_parallel.cpp: In function 'Rcpp::List init_tvc_par_(const arma::vec&, const arma::mat&, int, int, arma::vec, arma::vec, bool, int)':
stsc_parallel.cpp:36:38: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
   36 |           for (unsigned int j = 0; j < n_signal; j++) {
      |                                    ~~^~~~~~~~~~
stsc_parallel.cpp: In lambda function:
stsc_parallel.cpp:59:39: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
   59 |            for (unsigned int j = 0; j < n_signal; j++) {
      |                                     ~~^~~~~~~~~~
stsc_parallel.cpp:94:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
   94 |                if(j < n_raw_sig) {
      |                   ~~^~~~~~~~~~~
stsc_parallel.cpp: In function 'arma::field<arma::field<arma::Row<double> > > dsc_init_par_(int, int, int, arma::uvec&)':
stsc_parallel.cpp:290:34: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  290 |       for (unsigned int i = 0; i < n_gamma; ++i) {
      |                                ~~^~~~~~~~~
stsc_parallel.cpp: In function 'void dsc_score_cands_par_(arma::rowvec&, double, const arma::rowvec&, const arma::rowvec&, double, int, double, double, double)':
stsc_parallel.cpp:385:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
  385 |      for (unsigned int i=0; i<n_cands; i++) {
      |                             ~^~~~~~~~
stsc_parallel.cpp: In function 'void dsc_score_comb_par_(arma::rowvec&, double, const arma::rowvec&, const arma::rowvec&, double, int, double, double, double)':
stsc_parallel.cpp:499:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
  499 |       for (unsigned int i=0; i<n_combs; i++) {
      |                              ~^~~~~~~~
stsc_parallel.cpp: In function 'Rcpp::List stsc_loop_par_(const arma::vec&, Rcpp::Nullable<const Rcpp::Matrix<14>&>, Rcpp::Nullable<const Rcpp::Matrix<14>&>, int, arma::vec, arma::vec, bool, arma::rowvec, arma::irowvec, double, int, int, int, bool, Rcpp::Nullable<Rcpp::Vector<13> >, int, Rcpp::Nullable<Rcpp::Vector<14, Rcpp::PreserveStorage> >)':
stsc_parallel.cpp:912:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  912 |       for (unsigned int t=0; t<(tlength-1); t++ ) {
      |                              ~^~~~~~~~~~~~
stsc_parallel.cpp:950:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  950 |          if (t == (burn_in-1)) {
      |              ~~^~~~~~~~~~~~~~
stsc_parallel.cpp:962:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  962 |          if (t == (burn_in_dsc-1)) {
      |              ~~^~~~~~~~~~~~~~~~~~
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppThread/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -fopenmp    -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c tvc.cpp -o tvc.o
tvc.cpp: In function 'Rcpp::List init_tvc(const arma::vec&, const arma::mat&, int, int, arma::vec, arma::vec, bool)':
tvc.cpp:34:43: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
   34 |                for (unsigned int j = 0; j < n_signal; j++) {
      |                                         ~~^~~~~~~~~~
tvc.cpp:64:24: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
   64 |                   if(j < n_raw_sig) {
      |                      ~~^~~~~~~~~~~
tvc.cpp: In function 'Rcpp::List tvc_(const arma::vec&, Rcpp::Nullable<const Rcpp::Matrix<14>&>, Rcpp::Nullable<const Rcpp::Matrix<14>&>, int, const arma::vec&, const arma::vec&, bool)':
tvc.cpp:281:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  281 |       for (unsigned int t=0; t<(tlength-1); t++ ) {
      |                              ~^~~~~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o hdflex.dll tmp.def RcppExports.o dsc.o init.o stsc.o stsc_parallel.o tvc.o -fopenmp -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-hdflex/00new/hdflex/libs/x64
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hdflex)