* installing *source* package 'hdf5r' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 12.3.0' Linking to HDF5 ../windows/hdf5-1.8.16 "D:/RCompile/recent/R/bin/x64/Rscript.exe" "../tools/winlibs.R" 1.8.16 gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c H5Error.c -o H5Error.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c H5ls.c -o H5ls.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Wrapper_manual_H5T.c -o Wrapper_manual_H5T.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c convert.c -o convert.o convert.c: In function 'RToH5_INTEGER': convert.c:261:64: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'R_xlen_t' {aka 'long long int'} [-Wformat=] 261 | error("Length of integer vector not as expected: Actual: %ld; Expected %ld\n", XLENGTH(_Robj), nelem); | ~~^ ~~~~~~~~~~~~~~ | | | | long int R_xlen_t {aka long long int} | %lld convert.c:261:78: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'R_xlen_t' {aka 'long long int'} [-Wformat=] 261 | error("Length of integer vector not as expected: Actual: %ld; Expected %ld\n", XLENGTH(_Robj), nelem); | ~~^ ~~~~~ | | | | long int R_xlen_t {aka long long int} | %lld gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hdf5r_init.c -o hdf5r_init.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/const_export.c -o 1_8_16/const_export.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/datatype_export.c -o 1_8_16/datatype_export.o 1_8_16/datatype_export.c: In function 'print_dtypes_array': 1_8_16/datatype_export.c:67:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'hid_t' {aka 'int'} [-Wformat=] 67 | Rprintf("%d: %ld\n", i, h5_datatype[i]); | ~~^ ~~~~~~~~~~~~~~ | | | | long int hid_t {aka int} | %d gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5A.c -o 1_8_16/Wrapper_auto_H5A.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5.c -o 1_8_16/Wrapper_auto_H5.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5D.c -o 1_8_16/Wrapper_auto_H5D.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5DS.c -o 1_8_16/Wrapper_auto_H5DS.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5E.c -o 1_8_16/Wrapper_auto_H5E.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5F.c -o 1_8_16/Wrapper_auto_H5F.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5G.c -o 1_8_16/Wrapper_auto_H5G.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5I.c -o 1_8_16/Wrapper_auto_H5I.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5IM.c -o 1_8_16/Wrapper_auto_H5IM.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5L.c -o 1_8_16/Wrapper_auto_H5L.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5LT.c -o 1_8_16/Wrapper_auto_H5LT.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5O.c -o 1_8_16/Wrapper_auto_H5O.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5P.c -o 1_8_16/Wrapper_auto_H5P.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5R.c -o 1_8_16/Wrapper_auto_H5R.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5S.c -o 1_8_16/Wrapper_auto_H5S.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5TB.c -o 1_8_16/Wrapper_auto_H5TB.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5T.c -o 1_8_16/Wrapper_auto_H5T.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5Z.c -o 1_8_16/Wrapper_auto_H5Z.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5FDcore.c -o 1_8_16/Wrapper_auto_H5FDcore.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5FDfamily.c -o 1_8_16/Wrapper_auto_H5FDfamily.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5FDlog.c -o 1_8_16/Wrapper_auto_H5FDlog.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5FDsec2.c -o 1_8_16/Wrapper_auto_H5FDsec2.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I../windows/hdf5-1.8.16/include -I1_8_16 -I. -D__USE_MINGW_ANSI_STDIO -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c 1_8_16/Wrapper_auto_H5FDstdio.c -o 1_8_16/Wrapper_auto_H5FDstdio.o ar crs libwrapper.a 1_8_16/const_export.o 1_8_16/datatype_export.o 1_8_16/Wrapper_auto_H5A.o 1_8_16/Wrapper_auto_H5.o 1_8_16/Wrapper_auto_H5D.o 1_8_16/Wrapper_auto_H5DS.o 1_8_16/Wrapper_auto_H5E.o 1_8_16/Wrapper_auto_H5F.o 1_8_16/Wrapper_auto_H5G.o 1_8_16/Wrapper_auto_H5I.o 1_8_16/Wrapper_auto_H5IM.o 1_8_16/Wrapper_auto_H5L.o 1_8_16/Wrapper_auto_H5LT.o 1_8_16/Wrapper_auto_H5O.o 1_8_16/Wrapper_auto_H5P.o 1_8_16/Wrapper_auto_H5R.o 1_8_16/Wrapper_auto_H5S.o 1_8_16/Wrapper_auto_H5TB.o 1_8_16/Wrapper_auto_H5T.o 1_8_16/Wrapper_auto_H5Z.o 1_8_16/Wrapper_auto_H5FDcore.o 1_8_16/Wrapper_auto_H5FDfamily.o 1_8_16/Wrapper_auto_H5FDlog.o 1_8_16/Wrapper_auto_H5FDsec2.o 1_8_16/Wrapper_auto_H5FDstdio.o gcc -shared -s -static-libgcc -o hdf5r.dll tmp.def H5Error.o H5ls.o Wrapper_manual_H5T.o convert.o hdf5r_init.o -L. -lwrapper -L../windows/hdf5-1.8.16/lib/x64-ucrt -lhdf5 -lhdf5_hl -lz -lm -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-hdf5r/00new/hdf5r/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hdf5r)