* using log directory 'd:/RCompile/CRANincoming/R-devel/hdf5r.Rcheck' * using R Under development (unstable) (2024-01-07 r85787 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'hdf5r/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'hdf5r' version '1.3.9' * checking CRAN incoming feasibility ... [12s] NOTE Maintainer: 'Holger Hoefling ' Found the following (possibly) invalid URLs: URL: https://portal.hdfgroup.org/display/HDF5/H5A_CREATE2 From: man/H5D-class.Rd man/H5File-class.Rd man/H5Group-class.Rd man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5A_CREATE_BY_NAME From: man/H5D-class.Rd man/H5File-class.Rd man/H5Group-class.Rd man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5A_DELETE From: man/H5D-class.Rd man/H5File-class.Rd man/H5Group-class.Rd man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5A_DELETE_BY_IDX From: man/H5D-class.Rd man/H5File-class.Rd man/H5Group-class.Rd man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5A_DELETE_BY_NAME From: man/H5D-class.Rd man/H5File-class.Rd man/H5Group-class.Rd man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5A_EXISTS From: man/H5D-class.Rd man/H5File-class.Rd man/H5Group-class.Rd man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5A_EXISTS_BY_NAME From: man/H5D-class.Rd man/H5File-class.Rd man/H5Group-class.Rd man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5A_GET_INFO From: man/H5A-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5A_GET_INFO_BY_IDX From: man/H5D-class.Rd man/H5File-class.Rd man/H5Group-class.Rd man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5A_GET_INFO_BY_NAME From: man/H5D-class.Rd man/H5File-class.Rd man/H5Group-class.Rd man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5A_GET_NAME From: man/H5A-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5A_GET_NAME_BY_IDX From: man/H5D-class.Rd man/H5File-class.Rd man/H5Group-class.Rd man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5A_GET_SPACE From: man/H5A-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5A_GET_STORAGE_SIZE From: man/H5A-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5A_GET_TYPE From: man/H5A-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5A_OPEN From: man/H5D-class.Rd man/H5File-class.Rd man/H5Group-class.Rd man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5A_OPEN_BY_IDX From: man/H5D-class.Rd man/H5File-class.Rd man/H5Group-class.Rd man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5A_OPEN_BY_NAME From: man/H5D-class.Rd man/H5File-class.Rd man/H5Group-class.Rd man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5A_READ From: man/H5A-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5A_RENAME From: man/H5D-class.Rd man/H5File-class.Rd man/H5Group-class.Rd man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5A_RENAME_BY_NAME From: man/H5D-class.Rd man/H5File-class.Rd man/H5Group-class.Rd man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5A_WRITE From: man/H5A-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5D_CREATE2 From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5D_CREATE_ANON From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5D_GET_ACCESS_PLIST From: man/H5D-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5D_GET_CREATE_PLIST From: man/H5D-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5D_GET_OFFSET From: man/H5D-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5D_GET_SPACE From: man/H5D-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5D_GET_SPACE_STATUS From: man/H5D-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5D_GET_STORAGE_SIZE From: man/H5D-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5D_GET_TYPE From: man/H5D-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5D_OPEN From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5D_READ From: man/H5D-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5D_SET_EXTENT From: man/H5D-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5D_VLEN_GET_BUF_SIZE From: man/H5D-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5D_VLEN_RECLAIM From: man/H5D-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5D_WRITE From: man/H5D-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5F_FLUSH From: man/H5A-class.Rd man/H5D-class.Rd man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5F_GET_FILESIZE From: man/H5File-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5F_GET_INFO2 From: man/H5File-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5F_GET_INTENT From: man/H5File-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5F_GET_NAME From: man/H5A-class.Rd man/H5D-class.Rd man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5F_GET_OBJ_COUNT From: man/H5File-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5F_GET_OBJ_IDS From: man/H5File-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5F_MOUNT From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5F_UNMOUNT From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5G_CREATE2 From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5G_CREATE_ANON From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5G_GET_INFO From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5G_GET_INFO_BY_IDX From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5G_GET_INFO_BY_NAME From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5I_DEC_REF From: man/H5RefClass-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5I_GET_FILE_ID From: man/H5RefClass-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5I_GET_NAME From: man/H5D-class.Rd man/H5File-class.Rd man/H5Group-class.Rd man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5I_GET_REF From: man/H5RefClass-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5I_GET_TYPE From: man/H5RefClass-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5I_INC_REF From: man/H5RefClass-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5I_IS_VALID From: man/H5RefClass-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5LT_DTYPE_TO_TEXT From: man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5LT_TEXT_TO_DTYPE From: man/text_to_dtype.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5L_COPY From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5L_CREATE_EXTERNAL From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5L_CREATE_HARD From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5L_CREATE_SOFT From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5L_DELETE From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5L_DELETE_BY_IDX From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5L_EXISTS From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5L_GET_INFO From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5L_GET_INFO_BY_IDX From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5L_GET_NAME_BY_IDX From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5L_GET_VAL From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5L_GET_VAL_BY_IDX From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5L_MOVE From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5O_COPY From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5O_GET_INFO From: man/H5D-class.Rd man/H5File-class.Rd man/H5Group-class.Rd man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5O_GET_INFO_BY_IDX From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5O_GET_INFO_BY_NAME From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5O_LINK From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5O_OPEN From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5O_OPEN_BY_IDX From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_ALL_FILTERS_AVAIL From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_COPY From: man/H5P-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_EQUAL From: man/H5P-class.Rd man/H5P_CLASS-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_ALLOC_TIME From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_ATTR_CREATION_ORDER From: man/H5P_OBJECT_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_ATTR_PHASE_CHANGE From: man/H5P_OBJECT_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_BTREE_RATIOS From: man/H5P_DATASET_XFER-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_CHAR_ENCODING From: man/H5P_ATTRIBUTE_CREATE-class.Rd man/H5P_LINK_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_CHUNK From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_CHUNK_CACHE From: man/H5P_DATASET_ACCESS-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_CLASS From: man/H5P-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_CLASS_NAME From: man/H5P-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_COPY_OBJECT From: man/H5P_OBJECT_COPY-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_CREATE_INTERMEDIATE_GROUP From: man/H5P_LINK_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_EDC_CHECK From: man/H5P_DATASET_XFER-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_ELINK_ACC_FLAGS From: man/H5P_LINK_ACCESS-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_ELINK_PREFIX From: man/H5P_LINK_ACCESS-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_EXTERNAL From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_EXTERNAL_COUNT From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_FILE_SPACE_STRATEGY From: man/H5P_FILE_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_FILL_TIME From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_FILL_VALUE From: man/H5D-class.Rd man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_FILTER2 From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_HYPER_VECTOR_SIZE From: man/H5P_DATASET_XFER-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_ISTORE_K From: man/H5P_FILE_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_LAYOUT From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_NFILTERS From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_NLINKS From: man/H5P_LINK_ACCESS-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_OBJ_TRACK_TIMES From: man/H5P_OBJECT_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_SIZES From: man/H5P_FILE_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_SYM_K From: man/H5P_FILE_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_GET_USERBLOCK From: man/H5P_FILE_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_MODIFY_FILTER From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_REMOVE_FILTER From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_ALLOC_TIME From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_ATTR_CREATION_ORDER From: man/H5P_OBJECT_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_ATTR_PHASE_CHANGE From: man/H5P_OBJECT_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_BTREE_RATIOS From: man/H5P_DATASET_XFER-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_BUFFER From: man/H5P_DATASET_XFER-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_CACHE From: man/H5P_FILE_ACCESS-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_CHAR_ENCODING From: man/H5P_ATTRIBUTE_CREATE-class.Rd man/H5P_LINK_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_CHUNK From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_CHUNK_CACHE From: man/H5P_DATASET_ACCESS-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_COPY_OBJECT From: man/H5P_OBJECT_COPY-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_CREATE_INTERMEDIATE_GROUP From: man/H5P_LINK_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_DEFLATE From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_EDC_CHECK From: man/H5P_DATASET_XFER-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_ELINK_ACC_FLAGS From: man/H5P_LINK_ACCESS-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_ELINK_PREFIX From: man/H5P_LINK_ACCESS-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_EXTERNAL From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_FILE_SPACE_STRATEGY From: man/H5P_FILE_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_FILL_TIME From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_FILL_VALUE From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_FILTER From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_FLETCHER32 From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_HYPER_VECTOR_SIZE From: man/H5P_DATASET_XFER-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_ISTORE_K From: man/H5P_FILE_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_LAYOUT From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_NBIT From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_NLINKS From: man/H5P_LINK_ACCESS-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_OBJ_TRACK_TIMES From: man/H5P_OBJECT_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_SCALEOFFSET From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_SHUFFLE From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_SIZES From: man/H5P_FILE_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_SYM_K From: man/H5P_FILE_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_SZIP From: man/H5P_DATASET_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5P_SET_USERBLOCK From: man/H5P_FILE_CREATE-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5R_CREATE From: man/H5D-class.Rd man/H5File-class.Rd man/H5Group-class.Rd man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5R_DEREFERENCE From: man/H5R_DATASET_REGION-class.Rd man/H5R_OBJECT-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_COPY From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_ENCODE From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_EXTENT_COPY From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_EXTENT_EQUAL From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_GET_SELECT_BOUNDS From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_GET_SELECT_ELEM_NPOINTS From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_GET_SELECT_ELEM_POINTLIST From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_GET_SELECT_HYPER_BLOCKLIST From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_GET_SELECT_HYPER_NBLOCKS From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_GET_SELECT_NPOINTS From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_GET_SELECT_TYPE From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_GET_SIMPLE_EXTENT_DIMS From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_GET_SIMPLE_EXTENT_NDIMS From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_GET_SIMPLE_EXTENT_NPOINTS From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_GET_SIMPLE_EXTENT_TYPE From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_IS_SIMPLE From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_OFFSET_SIMPLE From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_SELECT_ALL From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_SELECT_ELEMENTS From: man/H5S-class.Rd man/H5S_H5D_subset_assign.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_SELECT_HYPERSLAB From: man/H5S-class.Rd man/H5S_H5D_subset_assign.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_SELECT_NONE From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_SELECT_VALID From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_SET_EXTENT_NONE From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5S_SET_EXTENT_SIMPLE From: man/H5S-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_COMMIT2 From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_COMMITTED From: man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_COPY From: man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_DETECT_CLASS From: man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_EQUAL From: man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_GET_ARRAY_DIMS2 From: man/H5T_ARRAY-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_GET_ARRAY_NDIMS From: man/H5T_ARRAY-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_GET_CLASS From: man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_GET_CREATE_PLIST From: man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_GET_CSET From: man/H5T_STRING-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_GET_EBIAS From: man/H5T_FLOAT-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_GET_FIELDS From: man/H5T_FLOAT-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_GET_INPAD From: man/H5T_FLOAT-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_GET_NATIVE_TYPE From: man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_GET_NORM From: man/H5T_FLOAT-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_GET_OFFSET From: man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_GET_ORDER From: man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_GET_PAD From: man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_GET_PRECISION From: man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_GET_SIGN From: man/H5T_INTEGER-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_GET_SIZE From: man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_GET_STRPAD From: man/H5T_STRING-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_GET_SUPER From: man/H5T_ARRAY-class.Rd man/H5T_VLEN-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_IS_VARIABLE_STR From: man/H5T_STRING-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_PACK From: man/H5T_COMPOUND-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_SET_CSET From: man/H5T_STRING-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_SET_EBIAS From: man/H5T_FLOAT-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_SET_FIELDS From: man/H5T_FLOAT-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_SET_INPAD From: man/H5T_FLOAT-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_SET_NORM From: man/H5T_FLOAT-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_SET_OFFSET From: man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_SET_ORDER From: man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_SET_PAD From: man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_SET_PRECISION From: man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_SET_SIGN From: man/H5T_INTEGER-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_SET_SIZE From: man/H5T-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/H5T_SET_STRPAD From: man/H5T_STRING-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/HP5_GET_CACHE From: man/H5P_FILE_ACCESS-class.Rd Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/Libraries+and+Tools+Reference From: inst/doc/hdf5r.html Status: 404 Message: Not Found URL: https://portal.hdfgroup.org/display/HDF5/Link+Access+Properties From: man/H5File-class.Rd man/H5Group-class.Rd Status: 404 Message: Not Found * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'hdf5r' can be installed ... WARNING Found the following significant warnings: convert.c:261:64: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'R_xlen_t' {aka 'long long int'} [-Wformat=] convert.c:261:78: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'R_xlen_t' {aka 'long long int'} [-Wformat=] 1_8_16/datatype_export.c:67:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'hid_t' {aka 'int'} [-Wformat=] See 'd:/RCompile/CRANincoming/R-devel/hdf5r.Rcheck/00install.out' for details. * used C compiler: 'gcc.exe (GCC) 12.3.0' * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) H5File-class.Rd:202: Lost braces; missing escapes or markup? 202 | \item{robj}{An R-object to take as a template for creating the dataset. Either \code{robj} or both \code{dtype} and {space} | ^ checkRd: (-1) H5Group-class.Rd:138: Lost braces; missing escapes or markup? 138 | \item{robj}{An R-object to take as a template for creating the dataset. Either \code{robj} or both \code{dtype} and {space} | ^ checkRd: (-1) H5P_factory.Rd:5: Lost braces 5 | \title{Create an \\code{\\link{H5P}} out of an id} | ^ checkRd: (-1) H5P_factory.Rd:5: Lost braces 5 | \title{Create an \\code{\\link{H5P}} out of an id} | ^ checkRd: (-1) H5P_factory.Rd:16: Lost braces 16 | Create an \\code{\\link{H5P}} out of an id | ^ checkRd: (-1) H5P_factory.Rd:16: Lost braces 16 | Create an \\code{\\link{H5P}} out of an id | ^ checkRd: (-1) H5P_factory.Rd:13: Lost braces 13 | An object of class \\code{\\link{H5P}} | ^ checkRd: (-1) H5P_factory.Rd:13: Lost braces 13 | An object of class \\code{\\link{H5P}} | ^ checkRd: (-1) args_regularity_evaluation.Rd:21: Lost braces 21 | \code{needs_reshuffle}, code{reshuffle}, \code{result_dims_pre_shuffle}, \code{result_dims_post_shuffle}, \code{max_dims} | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [14s] OK Running 'testthat.R' [14s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... [17s] OK * checking HTML version of manual ... [14s] OK * DONE Status: 1 WARNING, 2 NOTEs