* installing *source* package ‘hdf5r’ ...
** using staged installation
checking for a sed that does not truncate output... /usr/bin/sed
checking for gawk... gawk
checking for grep that handles long lines and -e... /usr/bin/grep
checking for gcc... clang-17
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether clang-17 accepts -g... yes
checking for clang-17 option to enable C11 features... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for h5cc... /usr/bin/h5cc
checking for HDF5 libraries... yes (version 1.10.10)
checking for hdf5.h... yes
checking for H5Fcreate in -lhdf5... yes
checking for hdf5_hl.h... yes
checking for H5LTpath_valid in -lhdf5_hl... yes
checking for main in -lhdf5_hl... yes
checking for matching HDF5 Fortran wrapper... /usr/bin/h5fc
Found hdf5 with version: 1.10.10
checking for ggrep... /usr/bin/grep
checking whether /usr/bin/grep accepts -o... yes
checking for ggrep... (cached) /usr/bin/grep
checking whether /usr/bin/grep accepts -o... yes
Using variables:
HDF5_LIBS= -L/usr/lib/x86_64-linux-gnu/hdf5/serial  -lcrypto  -lcurl  -lpthread  -lsz  -lz  -ldl  -lm  -L. -lhdf5_hl -lhdf5 -lz -lm
HDF5_CFLAGS=
HDF5_CPPFLAGS=-I/usr/include/hdf5/serial 
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘Debian clang version 17.0.6 (3)’
cp 1_10_3/*.c 1_10_3/*.h .
if [ "1.10.6" != "" ]; then patch -p2 < patch_1.10.6; fi
patching file datatype_export.c
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c const_export.c -o const_export.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c datatype_export.c -o datatype_export.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5A.c -o Wrapper_auto_H5A.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5.c -o Wrapper_auto_H5.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5D.c -o Wrapper_auto_H5D.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5DS.c -o Wrapper_auto_H5DS.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5E.c -o Wrapper_auto_H5E.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5F.c -o Wrapper_auto_H5F.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5G.c -o Wrapper_auto_H5G.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5I.c -o Wrapper_auto_H5I.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5IM.c -o Wrapper_auto_H5IM.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5L.c -o Wrapper_auto_H5L.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5LT.c -o Wrapper_auto_H5LT.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5O.c -o Wrapper_auto_H5O.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5P.c -o Wrapper_auto_H5P.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5R.c -o Wrapper_auto_H5R.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5S.c -o Wrapper_auto_H5S.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5TB.c -o Wrapper_auto_H5TB.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5T.c -o Wrapper_auto_H5T.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5Z.c -o Wrapper_auto_H5Z.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5FDcore.c -o Wrapper_auto_H5FDcore.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5FDfamily.c -o Wrapper_auto_H5FDfamily.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5FDlog.c -o Wrapper_auto_H5FDlog.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5FDsec2.c -o Wrapper_auto_H5FDsec2.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5FDstdio.c -o Wrapper_auto_H5FDstdio.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c convert.c -o convert.o
convert.c:2700:13: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
 2700 |     warning(issue_string);
      |             ^~~~~~~~~~~~
convert.c:2700:13: note: treat the string as an argument to avoid this
 2700 |     warning(issue_string);
      |             ^
      |             "%s", 
1 warning generated.
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c hdf5r_init.c -o hdf5r_init.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c H5Error.c -o H5Error.o
H5Error.c:115:9: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
  115 |   error(client_data.err_msg);
      |         ^~~~~~~~~~~~~~~~~~~
H5Error.c:115:9: note: treat the string as an argument to avoid this
  115 |   error(client_data.err_msg);
      |         ^
      |         "%s", 
1 warning generated.
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c H5ls.c -o H5ls.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_manual_H5T.c -o Wrapper_manual_H5T.o
clang-17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o hdf5r.so const_export.o datatype_export.o Wrapper_auto_H5A.o Wrapper_auto_H5.o Wrapper_auto_H5D.o Wrapper_auto_H5DS.o Wrapper_auto_H5E.o Wrapper_auto_H5F.o Wrapper_auto_H5G.o Wrapper_auto_H5I.o Wrapper_auto_H5IM.o Wrapper_auto_H5L.o Wrapper_auto_H5LT.o Wrapper_auto_H5O.o Wrapper_auto_H5P.o Wrapper_auto_H5R.o Wrapper_auto_H5S.o Wrapper_auto_H5TB.o Wrapper_auto_H5T.o Wrapper_auto_H5Z.o Wrapper_auto_H5FDcore.o Wrapper_auto_H5FDfamily.o Wrapper_auto_H5FDlog.o Wrapper_auto_H5FDsec2.o Wrapper_auto_H5FDstdio.o convert.o hdf5r_init.o H5Error.o H5ls.o Wrapper_manual_H5T.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -L. -lhdf5_hl -lhdf5 -lz -lm -L/home/hornik/tmp/R-d-clang-17/lib -lR
cp 1_10_3/*.c 1_10_3/*.h .
if [ "1.10.6" != "" ]; then patch -p2 < patch_1.10.6; fi
patching file datatype_export.c
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c const_export.c -o const_export.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c datatype_export.c -o datatype_export.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5A.c -o Wrapper_auto_H5A.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5.c -o Wrapper_auto_H5.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5D.c -o Wrapper_auto_H5D.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5DS.c -o Wrapper_auto_H5DS.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5E.c -o Wrapper_auto_H5E.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5F.c -o Wrapper_auto_H5F.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5G.c -o Wrapper_auto_H5G.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5I.c -o Wrapper_auto_H5I.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5IM.c -o Wrapper_auto_H5IM.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5L.c -o Wrapper_auto_H5L.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5LT.c -o Wrapper_auto_H5LT.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5O.c -o Wrapper_auto_H5O.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5P.c -o Wrapper_auto_H5P.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5R.c -o Wrapper_auto_H5R.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5S.c -o Wrapper_auto_H5S.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5TB.c -o Wrapper_auto_H5TB.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5T.c -o Wrapper_auto_H5T.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5Z.c -o Wrapper_auto_H5Z.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5FDcore.c -o Wrapper_auto_H5FDcore.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5FDfamily.c -o Wrapper_auto_H5FDfamily.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5FDlog.c -o Wrapper_auto_H5FDlog.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5FDsec2.c -o Wrapper_auto_H5FDsec2.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_auto_H5FDstdio.c -o Wrapper_auto_H5FDstdio.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c convert.c -o convert.o
convert.c:2700:13: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
 2700 |     warning(issue_string);
      |             ^~~~~~~~~~~~
convert.c:2700:13: note: treat the string as an argument to avoid this
 2700 |     warning(issue_string);
      |             ^
      |             "%s", 
1 warning generated.
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c hdf5r_init.c -o hdf5r_init.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c H5Error.c -o H5Error.o
H5Error.c:115:9: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
  115 |   error(client_data.err_msg);
      |         ^~~~~~~~~~~~~~~~~~~
H5Error.c:115:9: note: treat the string as an argument to avoid this
  115 |   error(client_data.err_msg);
      |         ^
      |         "%s", 
1 warning generated.
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c H5ls.c -o H5ls.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/include/hdf5/serial   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -D__USE_MINGW_ANSI_STDIO  -fpic  -g -O3 -Wall -pedantic -c Wrapper_manual_H5T.c -o Wrapper_manual_H5T.o
installing to /srv/hornik/tmp/CRAN/hdf5r.Rcheck/00LOCK-hdf5r/00new/hdf5r/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hdf5r)