* installing *source* package 'hdf5lib' ... ** this is package 'hdf5lib' version '1.14.6.5' ** using staged installation --- [hdf5lib] Starting Windows configuration --- --- [hdf5lib] Decompressing HDF5 and zlib tarballs... > utils::untar('hdf5.tar.gz') > > utils::untar('zlib.tar.gz') > --- [hdf5lib] Compiling static zlib... gcc -O3 -Wall -c -o adler32.o adler32.c gcc -O3 -Wall -c -o compress.o compress.c gcc -O3 -Wall -c -o crc32.o crc32.c gcc -O3 -Wall -c -o deflate.o deflate.c gcc -O3 -Wall -c -o gzclose.o gzclose.c gcc -O3 -Wall -c -o gzlib.o gzlib.c gcc -O3 -Wall -c -o gzread.o gzread.c gcc -O3 -Wall -c -o gzwrite.o gzwrite.c gcc -O3 -Wall -c -o infback.o infback.c gcc -O3 -Wall -c -o inffast.o inffast.c gcc -O3 -Wall -c -o inflate.o inflate.c gcc -O3 -Wall -c -o inftrees.o inftrees.c gcc -O3 -Wall -c -o trees.o trees.c gcc -O3 -Wall -c -o uncompr.o uncompr.c gcc -O3 -Wall -c -o zutil.o zutil.c ar rcs libz.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o --- [hdf5lib] Starting HDF5 build... --- [hdf5lib] Configuring bundled HDF5 library... checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for x86_64-w64-mingw32-strip... no checking for strip... strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... x86_64-pc-msys checking host system type... x86_64-w64-mingw32 checking shell variables initial values... done checking if basename works... yes checking if xargs works... yes checking for cached host... none checking enable warnings as errors... no checking for config x86_64-w64-mingw32... no checking for config x86_64-w64-mingw32... no checking for config w64-mingw32... no checking for config w64-mingw32... no checking for config x86_64-mingw32... no checking for config x86_64-mingw32... no checking for config x86_64-w64... no checking for config mingw32... no checking for config mingw32... no checking for config w64... no checking for config x86_64... no checking for config ./config/site-specific/host-CRANwin3... no checking for clang sanitizer checks... checking build mode... production checking for x86_64-w64-mingw32-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.exe checking for suffix of executables... .exe checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking if unsupported combinations of configure options are allowed... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for off_t... yes checking for ssize_t... yes checking whether byte ordering is bigendian... no checking size of char... 1 checking size of short... 2 checking size of int... 4 checking size of unsigned... 4 checking size of long... 4 checking size of long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking if non-standard feature support is enabled... yes checking if _Float16 support is enabled... yes configure: checking if _Float16 support is available checking size of _Float16... 2 checking for gcc options needed to detect all undeclared functions... none needed checking whether FLT16_EPSILON is declared... yes checking whether FLT16_MIN is declared... yes checking whether FLT16_MAX is declared... yes checking whether FLT16_MIN_10_EXP is declared... yes checking whether FLT16_MAX_10_EXP is declared... yes checking whether FLT16_MANT_DIG is declared... yes checking if compiler can correctly compile and run a test program which converts _Float16 to other types with casts... yes checking if compiler can correctly compile and run a test program which converts _Float16 to other types with casts (without CFLAGS)... yes checking if compiler can correctly convert long double values to _Float16... yes checking if compiler can correctly convert long double values to _Float16 (without CFLAGS)... yes checking for fabsf16... no checking if _Float16 support is enabled... yes checking if Fortran interface enabled... no checking whether the compiler supports GNU C++... yes checking whether g++ -std=gnu++17 accepts -g... yes checking for g++ -std=gnu++17 option to enable C++11 features... none needed checking dependency style of g++ -std=gnu++17... none checking how to run the C++ preprocessor... g++ -std=gnu++17 -E checking if c++ interface enabled... no checking if the high-level library is enabled... yes checking whether to use new references with dimension scales... no checking for ar... ar checking whether make sets $(MAKE)... (cached) yes checking for tr... /usr/bin/tr checking if srcdir= and time commands work together... no checking if Java JNI interface enabled... no checking if building tests is disabled... no checking if HDF5 testing intensity level is set... 3 checking if building tools is enabled... no checking if the high-level GIF tools are enabled... no checking if building doxygen is enabled... no checking if doxygen warnings as errors is enabled... FAIL_ON_WARNINGS checking how to print strings... printf checking for a sed that does not truncate output... sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /x86_64-w64-mingw32.static.posix/bin/ld checking if the linker (/x86_64-w64-mingw32.static.posix/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... no checking for x86_64-w64-mingw32-dumpbin... no checking for x86_64-w64-mingw32-link... no checking for dumpbin... no checking for link... link -dump checking the name lister (nm) interface... BSD nm checking whether ln -s works... no, using cp -pR checking the maximum length of command line arguments... 262144 checking how to convert x86_64-pc-msys file names to x86_64-w64-mingw32 format... func_convert_file_nix_to_w32 checking how to convert x86_64-pc-msys file names to toolchain format... func_convert_file_noop checking for /x86_64-w64-mingw32.static.posix/bin/ld option to reload object files... -r checking for x86_64-w64-mingw32-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL checking for x86_64-w64-mingw32-dlltool... no checking for dlltool... dlltool checking how to associate runtime and link libraries... func_cygming_dll_for_implib checking for x86_64-w64-mingw32-ar... (cached) ar checking for archiver @FILE support... @ checking for x86_64-w64-mingw32-strip... strip checking for x86_64-w64-mingw32-ranlib... no checking for ranlib... ranlib checking command to parse nm output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for x86_64-w64-mingw32-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... (cached) no checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -DDLL_EXPORT -DPIC checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/x86_64-w64-mingw32.static.posix/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking if we should install only statically linked executables... no checking if -Wl,-rpath should be used to link shared libs in nondefault directories... yes checking for ceil in -lm... yes checking for dlopen in -ldl... (cached) no checking for dirent.h... yes checking for features.h... no checking for pwd.h... no checking for unistd.h... (cached) yes checking for sys/file.h... yes checking for sys/ioctl.h... no checking for sys/resource.h... no checking for sys/stat.h... (cached) yes checking for sys/time.h... yes checking for sys/types.h... (cached) yes checking for htons in -lws2_32... yes checking for arpa/inet.h... no checking for netdb.h... no checking for netinet/in.h... no checking for sys/socket.h... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking size of int8_t... 1 checking size of uint8_t... 1 checking size of int_least8_t... 1 checking size of uint_least8_t... 1 checking size of int_fast8_t... 1 checking size of uint_fast8_t... 1 checking size of int16_t... 2 checking size of uint16_t... 2 checking size of int_least16_t... 2 checking size of uint_least16_t... 2 checking size of int_fast16_t... 2 checking size of uint_fast16_t... 2 checking size of int32_t... 4 checking size of uint32_t... 4 checking size of int_least32_t... 4 checking size of uint_least32_t... 4 checking size of int_fast32_t... 4 checking size of uint_fast32_t... 4 checking size of int64_t... 8 checking size of uint64_t... 8 checking size of int_least64_t... 8 checking size of uint_least64_t... 8 checking size of int_fast64_t... 8 checking size of uint_fast64_t... 8 checking size of bool... 1 checking size of off_t... 8 checking size of ptrdiff_t... 8 checking size of size_t... 8 checking size of ssize_t... 8 checking size of time_t... 8 checking if dev_t is scalar... yes checking for zlib.h... yes checking for compress2 in -lz... yes checking for compress2... yes checking for szlib... suppressed checking for thread safe support... yes checking whether CLOCK_MONOTONIC is declared... yes checking for tm_gmtoff in struct tm... no checking for global timezone variable... yes checking for st_blocks in struct stat... no checking for _getvideoconfig... no checking for gettextinfo... no checking for GetConsoleScreenBufferInfo... yes checking for _scrsize... no checking for ioctl... no checking for struct videoconfig... no checking for struct text_info... no checking for TIOCGWINSZ... no checking for TIOCGETD... no checking for library containing clock_gettime... none required checking for asprintf... yes checking for clock_gettime... yes checking for fcntl... no checking for flock... no checking for fork... no checking for gethostname... yes checking for getrusage... no checking for gettimeofday... yes checking for rand_r... no checking for random... no checking for strcasestr... no checking for strdup... yes checking for symlink... no checking for tmpfile... yes checking for vasprintf... yes checking for waitpid... no checking for __attribute__ extension... yes checking if compiler supports the __builtin_expect() extension... yes checking enable build diagnostics... no checking enable debugging symbols... no checking enable asserts... no checking enable developer warnings... no checking whether showing all compiler warnings is enabled... no checking profiling... no checking optimization level... high checking enable file locking... best-effort checking for internal debug output... none checking for API tracing... no checking whether a memory checking tool will be used... no checking for parallel support files... skipped checking parallel tools... no checking if the map API (H5M) is enabled... no checking if the subfiling I/O virtual file driver (VFD) is enabled... no checking whether O_DIRECT is declared... no checking for posix_memalign... no checking if the direct I/O virtual file driver (VFD) is enabled... no checking if the Mirror virtual file driver (VFD) is enabled... no checking if the Read-Only S3 virtual file driver (VFD) is enabled... no checking for libhdfs... suppressed checking for custom examples path definition... ${prefix}/share/hdf5_examples checking for custom plugin default path definition... /usr/local/hdf5/lib/plugin checking whether exception handling functions are checked during data conversions... yes checking whether data accuracy is guaranteed during data conversions... yes checking if the machine has window style path name... yes checking if using special algorithm to convert long double to (unsigned) long values... no checking if using special algorithm to convert (unsigned) long to long double values... no checking if correctly converting long double to (unsigned) long long values... yes checking if correctly converting (unsigned) long long to long double values... yes checking if the system is IBM ppc64le and cannot correctly convert some long double values... no checking additional programs should be built... no checking if deprecated public symbols are available... yes checking which version of public symbols to use by default... v114 checking whether to perform strict file format checks... no checking for pread... no checking for pwrite... no checking whether to use pread/pwrite instead of read/write in certain VFDs... no checking whether to have library information embedded in the executables... yes configure: creating ./config.lt config.lt: creating libtool checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating doxygen/Doxyfile config.status: creating src/Makefile config.status: creating src/libhdf5.settings config.status: creating src/H5build_settings.c config.status: creating test/Makefile config.status: creating test/H5srcdir_str.h config.status: creating test/test_abort_fail.sh config.status: creating test/test_check_version.sh config.status: creating test/test_error.sh config.status: creating test/test_external_env.sh config.status: creating test/test_flush_refresh.sh config.status: creating test/test_libinfo.sh config.status: creating test/test_links_env.sh config.status: creating test/test_mirror.sh config.status: creating test/test_plugin.sh config.status: creating test/test_swmr.sh config.status: creating test/test_use_cases.sh config.status: creating test/test_vds_env.sh config.status: creating test/test_vds_swmr.sh config.status: creating testpar/Makefile config.status: creating testpar/testpflush.sh config.status: creating utils/Makefile config.status: creating utils/mirror_vfd/Makefile config.status: creating utils/test/Makefile config.status: creating utils/tools/Makefile config.status: creating utils/tools/h5dwalk/Makefile config.status: creating utils/tools/test/Makefile config.status: creating utils/tools/test/h5dwalk/Makefile config.status: creating utils/tools/test/h5dwalk/copy_demo_files.sh config.status: creating utils/tools/test/h5dwalk/testh5dwalk.sh config.status: creating tools/Makefile config.status: creating tools/lib/Makefile config.status: creating tools/libtest/Makefile config.status: creating tools/src/Makefile config.status: creating tools/src/h5dump/Makefile config.status: creating tools/src/h5import/Makefile config.status: creating tools/src/h5diff/Makefile config.status: creating tools/src/h5jam/Makefile config.status: creating tools/src/h5repack/Makefile config.status: creating tools/src/h5ls/Makefile config.status: creating tools/src/h5copy/Makefile config.status: creating tools/src/misc/Makefile config.status: creating tools/src/h5stat/Makefile config.status: creating tools/test/Makefile config.status: creating tools/test/h5dump/Makefile config.status: creating tools/test/h5dump/h5dump_plugin.sh config.status: creating tools/test/h5dump/testh5dump.sh config.status: creating tools/test/h5dump/testh5dumppbits.sh config.status: creating tools/test/h5dump/testh5dumpvds.sh config.status: creating tools/test/h5dump/testh5dumpxml.sh config.status: creating tools/test/h5ls/Makefile config.status: creating tools/test/h5ls/h5ls_plugin.sh config.status: creating tools/test/h5ls/testh5ls.sh config.status: creating tools/test/h5ls/testh5lsvds.sh config.status: creating tools/test/h5import/Makefile config.status: creating tools/test/h5import/h5importtestutil.sh config.status: creating tools/test/h5diff/Makefile config.status: creating tools/test/h5diff/h5diff_plugin.sh config.status: creating tools/test/h5diff/testh5diff.sh config.status: creating tools/test/h5diff/testph5diff.sh config.status: creating tools/src/h5format_convert/Makefile config.status: creating tools/test/h5format_convert/Makefile config.status: creating tools/test/h5format_convert/testh5fc.sh config.status: creating tools/test/h5jam/Makefile config.status: creating tools/test/h5jam/testh5jam.sh config.status: creating tools/test/h5repack/Makefile config.status: creating tools/test/h5repack/h5repack.sh config.status: creating tools/test/h5repack/h5repack_plugin.sh config.status: creating tools/test/h5copy/Makefile config.status: creating tools/test/h5copy/testh5copy.sh config.status: creating tools/test/misc/Makefile config.status: creating tools/test/misc/testh5clear.sh config.status: creating tools/test/misc/testh5mkgrp.sh config.status: creating tools/test/misc/testh5repart.sh config.status: creating tools/test/misc/vds/Makefile config.status: creating tools/test/h5stat/Makefile config.status: creating tools/test/h5stat/testh5stat.sh config.status: creating tools/src/h5perf/Makefile config.status: creating tools/test/perform/Makefile config.status: creating bin/h5cc config.status: creating bin/Makefile config.status: creating c++/Makefile config.status: creating c++/src/Makefile config.status: creating c++/src/h5c++ config.status: creating c++/test/Makefile config.status: creating c++/test/H5srcdir_str.h config.status: creating fortran/Makefile config.status: creating fortran/src/h5fc config.status: creating fortran/src/Makefile config.status: creating fortran/src/H5fort_type_defines.h config.status: creating fortran/test/Makefile config.status: creating fortran/testpar/Makefile config.status: creating java/Makefile config.status: creating java/src/Makefile config.status: creating java/src/jni/Makefile config.status: creating java/test/Makefile config.status: creating java/test/junit.sh config.status: creating hl/Makefile config.status: creating hl/src/Makefile config.status: creating hl/test/Makefile config.status: creating hl/test/H5srcdir_str.h config.status: creating hl/tools/Makefile config.status: creating hl/tools/gif2h5/Makefile config.status: creating hl/tools/gif2h5/h52giftest.sh config.status: creating hl/tools/h5watch/Makefile config.status: creating hl/tools/h5watch/testh5watch.sh config.status: creating hl/examples/Makefile config.status: creating hl/examples/run-hlc-ex.sh config.status: creating hl/c++/Makefile config.status: creating hl/c++/src/Makefile config.status: creating hl/c++/test/Makefile config.status: creating hl/c++/examples/Makefile config.status: creating hl/c++/examples/run-hlc++-ex.sh config.status: creating hl/fortran/Makefile config.status: creating hl/fortran/src/Makefile config.status: creating hl/fortran/test/Makefile config.status: creating hl/fortran/examples/Makefile config.status: creating hl/fortran/examples/run-hlfortran-ex.sh config.status: creating utils/subfiling_vfd/h5fuse config.status: creating src/H5config.h config.status: executing pubconf commands creating src/H5pubconf.h Post process src/libhdf5.settings Post process src/H5build_settings.c config.status: executing depfiles commands config.status: executing libtool commands SUMMARY OF THE HDF5 CONFIGURATION ================================= General Information: ------------------- HDF5 Version: 1.14.6 Configured on: Mon Nov 10 20:37:06 2025 Configured by: CRANWIN3+CRAN@CRANwin3 Host system: x86_64-w64-mingw32 Uname information: MSYS_NT-10.0-20348 CRANwin3 3.6.5-0eeda3e1.x86_64 2025-10-10 14:51 UTC x86_64 Msys Byte sex: little-endian Installation point: /d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/hdf5/hdf5 Compiling Options: ------------------ Build Mode: production Debugging Symbols: no Asserts: no Profiling: no Optimization Level: high Linking Options: ---------------- Libraries: static Statically Linked Executables: LDFLAGS: -L/d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/zlib H5_LDFLAGS: AM_LDFLAGS: Extra libraries: -lz -lws2_32 -lm Archiver: ar AR_FLAGS: cr Ranlib: ranlib Languages: ---------- C: yes C Compiler: /x86_64-w64-mingw32.static.posix/bin/gcc CPPFLAGS: -ID:/RCompile/recent/R/include -ID:/RCompile/recent/R/include/x64 -I/d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/zlib H5_CPPFLAGS: -D_GNU_SOURCE -D__USE_MINGW_ANSI_STDIO -DNDEBUG -UH5_DEBUG_API -I/d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/hdf5/src/H5FDsubfiling AM_CPPFLAGS: -D_FILE_OFFSET_BITS=64 C Flags: -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -fPIC H5 C Flags: AM C Flags: Shared C Library: no Static C Library: yes Fortran: no C++: no Java: no Features: --------- Parallel HDF5: no Parallel Filtered Dataset Writes: no Large Parallel I/O: no High-level library: yes Dimension scales w/ new references: no Build HDF5 Tests: no Build HDF5 Tools: no Build GIF Tools: no Threadsafety: yes Default API mapping: v114 With deprecated public symbols: yes I/O filters (external): deflate(zlib) _Float16 support: yes Map (H5M) API: no Direct VFD: no Mirror VFD: no Subfiling VFD: no (Read-Only) S3 VFD: no (Read-Only) HDFS VFD: no Packages w/ extra debug output: none API tracing: no Using memory checker: no Use file locking: best-effort Strict file format checks: no Optimization instrumentation: no --- [hdf5lib] Compiling HDF5 static library... Making all in src make[1]: Entering directory '/d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/hdf5/src' make all-am make[2]: Entering directory '/d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/hdf5/src' CC H5.lo CC H5build_settings.lo CC H5checksum.lo CC H5dbg.lo CC H5system.lo CC H5timer.lo CC H5trace.lo CC H5A.lo CC H5Abtree2.lo CC H5Adense.lo CC H5Adeprec.lo CC H5Aint.lo CC H5Atest.lo CC H5AC.lo CC H5ACdbg.lo CC H5ACproxy_entry.lo CC H5B.lo CC H5Bcache.lo CC H5Bdbg.lo CC H5B2.lo CC H5B2cache.lo CC H5B2dbg.lo CC H5B2hdr.lo CC H5B2int.lo CC H5B2internal.lo CC H5B2leaf.lo CC H5B2stat.lo CC H5B2test.lo CC H5C.lo CC H5Cdbg.lo CC H5Centry.lo CC H5Cepoch.lo CC H5Cimage.lo CC H5Cint.lo CC H5Clog.lo CC H5Clog_json.lo CC H5Clog_trace.lo CC H5Cprefetched.lo CC H5Cquery.lo CC H5Ctag.lo CC H5Ctest.lo CC H5CX.lo CC H5D.lo CC H5Dbtree.lo CC H5Dbtree2.lo CC H5Dchunk.lo CC H5Dcompact.lo CC H5Dcontig.lo CC H5Ddbg.lo CC H5Ddeprec.lo CC H5Dearray.lo CC H5Defl.lo CC H5Dfarray.lo CC H5Dfill.lo CC H5Dint.lo CC H5Dio.lo CC H5Dlayout.lo CC H5Dnone.lo CC H5Doh.lo CC H5Dscatgath.lo CC H5Dselect.lo CC H5Dsingle.lo CC H5Dtest.lo CC H5Dvirtual.lo CC H5E.lo CC H5Edeprec.lo CC H5Eint.lo CC H5EA.lo CC H5EAcache.lo CC H5EAdbg.lo CC H5EAdblkpage.lo CC H5EAdblock.lo CC H5EAhdr.lo CC H5EAiblock.lo CC H5EAint.lo CC H5EAsblock.lo CC H5EAstat.lo CC H5EAtest.lo CC H5ES.lo CC H5ESevent.lo CC H5ESint.lo CC H5ESlist.lo CC H5F.lo CC H5Faccum.lo CC H5Fcwfs.lo CC H5Fdbg.lo CC H5Fdeprec.lo CC H5Fefc.lo CC H5Ffake.lo CC H5Fint.lo CC H5Fio.lo CC H5Fmount.lo CC H5Fquery.lo CC H5Fsfile.lo CC H5Fspace.lo CC H5Fsuper.lo CC H5Fsuper_cache.lo CC H5Ftest.lo CC H5FA.lo CC H5FAcache.lo CC H5FAdbg.lo CC H5FAdblock.lo CC H5FAdblkpage.lo CC H5FAhdr.lo CC H5FAint.lo CC H5FAstat.lo CC H5FAtest.lo CC H5FD.lo CC H5FDcore.lo CC H5FDfamily.lo CC H5FDint.lo CC H5FDlog.lo CC H5FDmulti.lo CC H5FDonion.lo CC H5FDonion_header.lo CC H5FDonion_history.lo CC H5FDonion_index.lo CC H5FDperform.lo CC H5FDsec2.lo CC H5FDspace.lo CC H5FDsplitter.lo CC H5FDstdio.lo CC H5FDtest.lo CC H5FDwindows.lo CC H5FL.lo CC H5FO.lo CC H5FS.lo CC H5FScache.lo CC H5FSdbg.lo CC H5FSint.lo CC H5FSsection.lo CC H5FSstat.lo CC H5FStest.lo CC H5G.lo CC H5Gbtree2.lo CC H5Gcache.lo CC H5Gcompact.lo CC H5Gdense.lo CC H5Gdeprec.lo CC H5Gent.lo CC H5Gint.lo CC H5Glink.lo CC H5Gloc.lo CC H5Gname.lo CC H5Gnode.lo CC H5Gobj.lo CC H5Goh.lo CC H5Groot.lo CC H5Gstab.lo CC H5Gtest.lo CC H5Gtraverse.lo CC H5HF.lo CC H5HFbtree2.lo CC H5HFcache.lo CC H5HFdbg.lo CC H5HFdblock.lo CC H5HFdtable.lo CC H5HFhdr.lo CC H5HFhuge.lo CC H5HFiblock.lo CC H5HFiter.lo CC H5HFman.lo CC H5HFsection.lo CC H5HFspace.lo CC H5HFstat.lo CC H5HFtest.lo CC H5HFtiny.lo CC H5HG.lo CC H5HGcache.lo CC H5HGdbg.lo CC H5HGquery.lo CC H5HL.lo CC H5HLcache.lo CC H5HLdbg.lo CC H5HLint.lo CC H5HLprfx.lo CC H5HLdblk.lo CC H5I.lo CC H5Idbg.lo CC H5Iint.lo CC H5Itest.lo CC H5L.lo CC H5Ldeprec.lo CC H5Lexternal.lo CC H5Lint.lo CC H5M.lo CC H5MF.lo CC H5MFaggr.lo CC H5MFdbg.lo CC H5MFsection.lo CC H5MM.lo CC H5O.lo CC H5Odeprec.lo CC H5Oainfo.lo CC H5Oalloc.lo CC H5Oattr.lo CC H5Oattribute.lo CC H5Obogus.lo CC H5Obtreek.lo CC H5Ocache.lo CC H5Ocache_image.lo CC H5Ochunk.lo CC H5Ocont.lo CC H5Ocopy.lo CC H5Ocopy_ref.lo CC H5Odbg.lo CC H5Odrvinfo.lo CC H5Odtype.lo CC H5Oefl.lo CC H5Ofill.lo CC H5Oflush.lo CC H5Ofsinfo.lo CC H5Oginfo.lo CC H5Oint.lo CC H5Olayout.lo CC H5Olinfo.lo CC H5Olink.lo CC H5Omessage.lo CC H5Omtime.lo CC H5Oname.lo CC H5Onull.lo CC H5Opline.lo CC H5Orefcount.lo CC H5Osdspace.lo CC H5Oshared.lo CC H5Oshmesg.lo CC H5Ostab.lo CC H5Otest.lo CC H5Ounknown.lo CC H5P.lo CC H5Pacpl.lo CC H5Pdapl.lo CC H5Pdcpl.lo CC H5Pdeprec.lo CC H5Pdxpl.lo CC H5Pencdec.lo CC H5Pfapl.lo CC H5Pfcpl.lo CC H5Pfmpl.lo CC H5Pgcpl.lo CC H5Pint.lo CC H5Plapl.lo CC H5Plcpl.lo CC H5Pmapl.lo CC H5Pmcpl.lo CC H5Pocpl.lo CC H5Pocpypl.lo CC H5Pstrcpl.lo CC H5Ptest.lo CC H5PB.lo CC H5PL.lo CC H5PLint.lo CC H5PLpath.lo CC H5PLplugin_cache.lo CC H5R.lo CC H5Rdeprec.lo CC H5Rint.lo CC H5UC.lo CC H5RS.lo CC H5S.lo CC H5Sall.lo CC H5Sdbg.lo CC H5Sdeprec.lo CC H5Shyper.lo CC H5Snone.lo CC H5Spoint.lo CC H5Sselect.lo CC H5Stest.lo CC H5SL.lo CC H5SM.lo CC H5SMbtree2.lo CC H5SMcache.lo CC H5SMmessage.lo CC H5SMtest.lo CC H5T.lo CC H5Tarray.lo CC H5Tbit.lo CC H5Tcommit.lo CC H5Tcompound.lo CC H5Tconv.lo CC H5Tconv_integer.lo CC H5Tconv_float.lo CC H5Tconv_string.lo CC H5Tconv_bitfield.lo CC H5Tconv_compound.lo CC H5Tconv_reference.lo CC H5Tconv_enum.lo CC H5Tconv_vlen.lo CC H5Tconv_array.lo CC H5Tcset.lo CC H5Tdbg.lo CC H5Tdeprec.lo CC H5Tenum.lo CC H5Tfields.lo CC H5Tfixed.lo CC H5Tfloat.lo CC H5Tinit_float.lo CC H5Tnative.lo CC H5Toffset.lo CC H5Toh.lo CC H5Topaque.lo CC H5Torder.lo CC H5Tref.lo CC H5Tpad.lo CC H5Tprecis.lo CC H5Tstrpad.lo CC H5Tvisit.lo CC H5Tvlen.lo CC H5TS.lo CC H5VL.lo CC H5VLcallback.lo CC H5VLdyn_ops.lo CC H5VLint.lo CC H5VLnative.lo CC H5VLnative_attr.lo CC H5VLnative_blob.lo CC H5VLnative_dataset.lo CC H5VLnative_datatype.lo CC H5VLnative_file.lo CC H5VLnative_group.lo CC H5VLnative_link.lo CC H5VLnative_introspect.lo CC H5VLnative_object.lo CC H5VLnative_token.lo CC H5VLpassthru.lo CC H5VLtest.lo CC H5VM.lo CC H5WB.lo CC H5Z.lo CC H5Zdeflate.lo CC H5Zfletcher32.lo CC H5Znbit.lo CC H5Zshuffle.lo CC H5Zscaleoffset.lo CC H5Zszip.lo CC H5Ztrans.lo CCLD libhdf5.la libtool: warning: undefined symbols not allowed in x86_64-w64-mingw32 shared libraries; building static only make[2]: Leaving directory '/d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/hdf5/src' make[1]: Leaving directory '/d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/hdf5/src' Making all in bin make[1]: Entering directory '/d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/hdf5/bin' make[1]: Leaving directory '/d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/hdf5/bin' Making all in utils make[1]: Entering directory '/d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/hdf5/utils' make[2]: Entering directory '/d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/hdf5/utils' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/hdf5/utils' make[1]: Leaving directory '/d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/hdf5/utils' Making all in . make[1]: Entering directory '/d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/hdf5' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/hdf5' Making all in hl make[1]: Entering directory '/d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/hdf5/hl' Making all in src make[2]: Entering directory '/d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/hdf5/hl/src' CC H5DO.lo CC H5DS.lo CC H5IM.lo CC H5LT.lo CC H5LTanalyze.lo CC H5LTparse.lo CC H5PT.lo CC H5TB.lo CC H5LD.lo CCLD libhdf5_hl.la libtool: warning: undefined symbols not allowed in x86_64-w64-mingw32 shared libraries; building static only make[2]: Leaving directory '/d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/hdf5/hl/src' make[2]: Entering directory '/d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/hdf5/hl' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/hdf5/hl' make[1]: Leaving directory '/d/temp/2025_11_10_20_35_16_22754/RtmpSSnBzB/R.INSTALLdda09a7174c/hdf5lib/src/hdf5/hl' --- [hdf5lib] Extracting all object files... --- [hdf5lib] Merging all .o files into libhdf5.a... D:\rtools45\x86_64-w64-mingw32.static.posix\bin\ar.exe: creating libhdf5.a --- [hdf5lib] Stripping static library... --- [hdf5lib] Exposing minified HDF5 headers... --- [hdf5lib] Exposing final merged static library... --- [hdf5lib] Cleaning up build-time directories... --- [hdf5lib] Windows configuration complete. --- ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hdf5lib)