test_that("plot.mixturecure function works correctly", { withr::local_seed(1234) temp <- generate_cure_data(n = 100, j = 10, n_true = 10, a = 1.8) training <- temp$training fit <- curegmifs(Surv(Time, Censor) ~ ., data = training, x_latency = training, model = "weibull", thresh = 1e-4, maxit = 2000, epsilon = 0.01, verbose = FALSE ) expect_invisible(plot(fit, xlab = "Step", ylab = "Log-likelihood", main = "trace")) expect_invisible(plot(fit, type = "AIC")) expect_invisible(plot(fit, type = "BIC")) expect_invisible(plot(fit, type = "logLik")) expect_invisible(plot(fit, type = "mAIC")) expect_invisible(plot(fit, type = "mBIC")) expect_invisible(plot(fit, type = "EBIC")) withr::local_seed(123) temp <- generate_cure_data(n = 100, j = 15, n_true = 3, a = 1.8, rho = 0.2) training <- temp$training fit.cv <- cv_curegmifs(Surv(Time, Censor) ~ ., data = training, x_latency = training, fdr_control = FALSE, maxit = 450, epsilon = 0.01, n_folds = 2, seed = 23, verbose = TRUE ) expect_visible(plot(fit.cv)) fit.cv.fdr <- cv_cureem(Surv(Time, Censor) ~ ., data = training, x_latency = training, model = "weibull", penalty = "lasso", fdr_control = TRUE, grid_tuning = FALSE, nlambda_inc = 10, nlambda_lat = 10, n_folds = 2, seed = 23, verbose = TRUE ) expect_silent(plot(fit.cv.fdr)) fit.em <- cureem(Surv(Time, Censor) ~ ., data = training, x_latency = training, model = "cox", penalty = "lasso", lambda_inc = 0.1, lambda_lat = 0.1, gamma_inc = 6, gamma_lat = 10 ) expect_silent(plot(fit.em)) })