R Under development (unstable) (2025-07-05 r88387 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(hbsaems)
Loading required package: brms
Loading required package: Rcpp
Loading 'brms' package (version 2.22.0). Useful instructions
can be found by typing help('brms'). A more detailed introduction
to the package is available through vignette('brms_overview').

Attaching package: 'brms'

The following object is masked from 'package:stats':

    ar

> 
> test_check("hbsaems")
Compiling Stan program...
Start sampling

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 6.8e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.68 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
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Chain 1: 
Chain 1:  Elapsed Time: 0.916 seconds (Warm-up)
Chain 1:                0.888 seconds (Sampling)
Chain 1:                1.804 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2).
Chain 2: 
Chain 2: Gradient evaluation took 1.6e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds.
Chain 2: Adjust your expectations accordingly!
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Chain 2: 
Chain 2:  Elapsed Time: 0.677 seconds (Warm-up)
Chain 2:                1.912 seconds (Sampling)
Chain 2:                2.589 seconds (Total)
Chain 2: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 3).
Chain 3: 
Chain 3: Gradient evaluation took 1.8e-05 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.18 seconds.
Chain 3: Adjust your expectations accordingly!
Chain 3: 
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Chain 3: 
Chain 3:  Elapsed Time: 0.807 seconds (Warm-up)
Chain 3:                1.038 seconds (Sampling)
Chain 3:                1.845 seconds (Total)
Chain 3: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 4).
Chain 4: 
Chain 4: Gradient evaluation took 2e-05 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.2 seconds.
Chain 4: Adjust your expectations accordingly!
Chain 4: 
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Chain 4: 
Chain 4:  Elapsed Time: 1.035 seconds (Warm-up)
Chain 4:                0.74 seconds (Sampling)
Chain 4:                1.775 seconds (Total)
Chain 4: 

Attaching package: 'mice'

The following object is masked from 'package:stats':

    filter

The following objects are masked from 'package:base':

    cbind, rbind

Compiling Stan program...
Start sampling

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 7.5e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.75 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
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Chain 1: 
Chain 1:  Elapsed Time: 1.035 seconds (Warm-up)
Chain 1:                1.513 seconds (Sampling)
Chain 1:                2.548 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2).
Chain 2: 
Chain 2: Gradient evaluation took 1.7e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.17 seconds.
Chain 2: Adjust your expectations accordingly!
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Chain 2: 
Chain 2:  Elapsed Time: 0.821 seconds (Warm-up)
Chain 2:                0.711 seconds (Sampling)
Chain 2:                1.532 seconds (Total)
Chain 2: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 3).
Chain 3: 
Chain 3: Gradient evaluation took 1.6e-05 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds.
Chain 3: Adjust your expectations accordingly!
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Chain 3: 
Chain 3:  Elapsed Time: 0.825 seconds (Warm-up)
Chain 3:                1.232 seconds (Sampling)
Chain 3:                2.057 seconds (Total)
Chain 3: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 4).
Chain 4: 
Chain 4: Gradient evaluation took 1.6e-05 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds.
Chain 4: Adjust your expectations accordingly!
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Chain 4: 
Chain 4:  Elapsed Time: 0.908 seconds (Warm-up)
Chain 4:                0.902 seconds (Sampling)
Chain 4:                1.81 seconds (Total)
Chain 4: 
Compiling Stan program...
Start sampling

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 6.3e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.63 seconds.
Chain 1: Adjust your expectations accordingly!
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Chain 1: 
Chain 1:  Elapsed Time: 0.821 seconds (Warm-up)
Chain 1:                0.898 seconds (Sampling)
Chain 1:                1.719 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2).
Chain 2: 
Chain 2: Gradient evaluation took 1.6e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds.
Chain 2: Adjust your expectations accordingly!
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Chain 2: 
Chain 2:  Elapsed Time: 0.84 seconds (Warm-up)
Chain 2:                0.799 seconds (Sampling)
Chain 2:                1.639 seconds (Total)
Chain 2: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 3).
Chain 3: 
Chain 3: Gradient evaluation took 1.6e-05 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds.
Chain 3: Adjust your expectations accordingly!
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Chain 3: 
Chain 3:  Elapsed Time: 0.956 seconds (Warm-up)
Chain 3:                0.634 seconds (Sampling)
Chain 3:                1.59 seconds (Total)
Chain 3: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 4).
Chain 4: 
Chain 4: Gradient evaluation took 1.6e-05 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds.
Chain 4: Adjust your expectations accordingly!
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Chain 4: 
Chain 4:  Elapsed Time: 0.734 seconds (Warm-up)
Chain 4:                0.509 seconds (Sampling)
Chain 4:                1.243 seconds (Total)
Chain 4: 
Compiling Stan program...
Start sampling

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 6.7e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.67 seconds.
Chain 1: Adjust your expectations accordingly!
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Chain 1: 
Chain 1:  Elapsed Time: 0.921 seconds (Warm-up)
Chain 1:                0.734 seconds (Sampling)
Chain 1:                1.655 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2).
Chain 2: 
Chain 2: Gradient evaluation took 1.7e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.17 seconds.
Chain 2: Adjust your expectations accordingly!
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Chain 2: 
Chain 2:  Elapsed Time: 1.169 seconds (Warm-up)
Chain 2:                1.896 seconds (Sampling)
Chain 2:                3.065 seconds (Total)
Chain 2: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 3).
Chain 3: 
Chain 3: Gradient evaluation took 1.7e-05 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.17 seconds.
Chain 3: Adjust your expectations accordingly!
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Chain 3: 
Chain 3:  Elapsed Time: 0.919 seconds (Warm-up)
Chain 3:                0.714 seconds (Sampling)
Chain 3:                1.633 seconds (Total)
Chain 3: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 4).
Chain 4: 
Chain 4: Gradient evaluation took 1.3e-05 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.13 seconds.
Chain 4: Adjust your expectations accordingly!
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Chain 4: 
Chain 4:  Elapsed Time: 0.697 seconds (Warm-up)
Chain 4:                0.445 seconds (Sampling)
Chain 4:                1.142 seconds (Total)
Chain 4: 
Compiling Stan program...
Start sampling

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 7.3e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.73 seconds.
Chain 1: Adjust your expectations accordingly!
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Chain 1:  Elapsed Time: 0.991 seconds (Warm-up)
Chain 1:                0.819 seconds (Sampling)
Chain 1:                1.81 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2).
Chain 2: 
Chain 2: Gradient evaluation took 1.4e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.14 seconds.
Chain 2: Adjust your expectations accordingly!
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Chain 2:  Elapsed Time: 1.1 seconds (Warm-up)
Chain 2:                4.254 seconds (Sampling)
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Chain 2: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 3).
Chain 3: 
Chain 3: Gradient evaluation took 1.7e-05 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.17 seconds.
Chain 3: Adjust your expectations accordingly!
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Chain 3:  Elapsed Time: 0.907 seconds (Warm-up)
Chain 3:                0.866 seconds (Sampling)
Chain 3:                1.773 seconds (Total)
Chain 3: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 4).
Chain 4: 
Chain 4: Gradient evaluation took 1.6e-05 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds.
Chain 4: Adjust your expectations accordingly!
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Chain 4:                1.612 seconds (Total)
Chain 4: 
Compiling Stan program...
Start sampling

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 9.8e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.98 seconds.
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Chain 1:  Elapsed Time: 1.292 seconds (Warm-up)
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Chain 1:                2.603 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2).
Chain 2: 
Chain 2: Gradient evaluation took 3.4e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.34 seconds.
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Chain 2: 
Chain 2:  Elapsed Time: 1.216 seconds (Warm-up)
Chain 2:                1.351 seconds (Sampling)
Chain 2:                2.567 seconds (Total)
Chain 2: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 3).
Chain 3: 
Chain 3: Gradient evaluation took 4.9e-05 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.49 seconds.
Chain 3: Adjust your expectations accordingly!
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Chain 3: 
Chain 3:  Elapsed Time: 1.179 seconds (Warm-up)
Chain 3:                1.416 seconds (Sampling)
Chain 3:                2.595 seconds (Total)
Chain 3: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 4).
Chain 4: 
Chain 4: Gradient evaluation took 4.9e-05 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.49 seconds.
Chain 4: Adjust your expectations accordingly!
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Chain 4: 
Chain 4:  Elapsed Time: 1.388 seconds (Warm-up)
Chain 4:                0.802 seconds (Sampling)
Chain 4:                2.19 seconds (Total)
Chain 4: 
Compiling Stan program...
Start sampling

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 5.8e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.58 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
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Chain 1: 
Chain 1:  Elapsed Time: 0.178 seconds (Warm-up)
Chain 1:                0.093 seconds (Sampling)
Chain 1:                0.271 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2).
Chain 2: 
Chain 2: Gradient evaluation took 1.6e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2: 
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Chain 2: 
Chain 2:  Elapsed Time: 0.173 seconds (Warm-up)
Chain 2:                0.112 seconds (Sampling)
Chain 2:                0.285 seconds (Total)
Chain 2: 
Setting 'rescor' to TRUE by default for this model
Compiling Stan program...
Start sampling

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.000186 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.86 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
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Chain 1: 
Chain 1:  Elapsed Time: 2.641 seconds (Warm-up)
Chain 1:                0.917 seconds (Sampling)
Chain 1:                3.558 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2).
Chain 2: 
Chain 2: Gradient evaluation took 7.3e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.73 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2: 
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Chain 2: 
Chain 2:  Elapsed Time: 1.279 seconds (Warm-up)
Chain 2:                0.934 seconds (Sampling)
Chain 2:                2.213 seconds (Total)
Chain 2: 
[ FAIL 0 | WARN 0 | SKIP 102 | PASS 2 ]

══ Skipped tests (102) ═════════════════════════════════════════════════════════
• On CRAN (102): 'test-hbcc.R:9:3', 'test-hbcc.R:16:3', 'test-hbcc.R:23:3',
  'test-hbcc.R:30:3', 'test-hbm-betalogitnorm.R:7:3',
  'test-hbm-betalogitnorm.R:34:3', 'test-hbm-betalogitnorm.R:135:3',
  'test-hbm-betalogitnorm.R:191:3', 'test-hbm-betalogitnorm.R:202:3',
  'test-hbm-betalogitnorm.R:253:3', 'test-hbm-betalogitnorm.R:294:3',
  'test-hbm-betalogitnorm.R:355:3', 'test-hbm-betalogitnorm.R:399:3',
  'test-hbm-binlogitnorm.R:7:3', 'test-hbm-binlogitnorm.R:19:3',
  'test-hbm-binlogitnorm.R:29:3', 'test-hbm-binlogitnorm.R:39:3',
  'test-hbm-binlogitnorm.R:50:3', 'test-hbm-binlogitnorm.R:62:3',
  'test-hbm-binlogitnorm.R:75:3', 'test-hbm-binlogitnorm.R:88:3',
  'test-hbm-binlogitnorm.R:102:3', 'test-hbm-binlogitnorm.R:117:3',
  'test-hbm-binlogitnorm.R:131:3', 'test-hbm-binlogitnorm.R:144:3',
  'test-hbm-binlogitnorm.R:156:3', 'test-hbm-binlogitnorm.R:172:3',
  'test-hbm-binlogitnorm.R:187:3', 'test-hbm-binlogitnorm.R:202:3',
  'test-hbm-binlogitnorm.R:218:3', 'test-hbm-binlogitnorm.R:234:3',
  'test-hbm-binlogitnorm.R:247:3', 'test-hbm-binlogitnorm.R:261:3',
  'test-hbm-binlogitnorm.R:341:3', 'test-hbm-binlogitnorm.R:360:3',
  'test-hbm-binlogitnorm.R:377:3', 'test-hbm-binlogitnorm.R:395:3',
  'test-hbm-binlogitnorm.R:414:3', 'test-hbm-lnln.R:7:3',
  'test-hbm-lnln.R:21:3', 'test-hbm-lnln.R:33:3', 'test-hbm-lnln.R:46:3',
  'test-hbm-lnln.R:72:3', 'test-hbm-lnln.R:88:3', 'test-hbm-lnln.R:102:3',
  'test-hbm-lnln.R:115:3', 'test-hbm-lnln.R:129:3', 'test-hbm-lnln.R:146:3',
  'test-hbm-lnln.R:162:3', 'test-hbm-lnln.R:178:3', 'test-hbm-lnln.R:197:3',
  'test-hbm-lnln.R:213:3', 'test-hbm-lnln.R:229:3', 'test-hbm-lnln.R:246:3',
  'test-hbm-lnln.R:261:3', 'test-hbm-lnln.R:278:3', 'test-hbm-lnln.R:294:3',
  'test-hbm-lnln.R:310:3', 'test-hbm-lnln.R:327:3', 'test-hbm-lnln.R:425:3',
  'test-hbm.R:8:3', 'test-hbm.R:18:3', 'test-hbm.R:34:3', 'test-hbm.R:72:3',
  'test-hbm.R:95:3', 'test-hbm.R:139:3', 'test-hbm.R:179:3',
  'test-hbm.R:194:3', 'test-hbm.R:224:3', 'test-hbm.R:236:3',
  'test-hbm.R:248:3', 'test-hbm.R:261:3', 'test-hbm.R:275:3',
  'test-hbm.R:286:3', 'test-hbm.R:299:3', 'test-hbm.R:361:3',
  'test-hbm.R:376:3', 'test-hbmc.R:25:3', 'test-hbmc.R:34:3',
  'test-hbmc.R:40:3', 'test-hbmc.R:70:3', 'test-hbpc.R:9:3',
  'test-hbpc.R:19:3', 'test-hbpc.R:29:3', 'test-hbpc.R:38:3',
  'test-hbpc.R:47:3', 'test-hbpc.R:66:3', 'test-hbpc.R:83:3',
  'test-hbpc.R:110:3', 'test-hbsae.R:9:3', 'test-hbsae.R:21:3',
  'test-hbsae.R:27:3', 'test-hbsae.R:35:3', 'test-hbsae.R:61:3',
  'test-hbsae.R:68:3', 'test-hbsae.R:75:3', 'test-run_sae_app.R:4:3',
  'test-run_sae_app.R:22:3', 'test-run_sae_app.R:28:3',
  'test-update_hbm.R:21:3', 'test-update_hbm.R:42:3', 'test-update_hbm.R:67:3'

[ FAIL 0 | WARN 0 | SKIP 102 | PASS 2 ]
> 
> proc.time()
   user  system elapsed 
  95.65    3.06  671.31