R Under development (unstable) (2025-07-05 r88387 ucrt) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(hbsaems) Loading required package: brms Loading required package: Rcpp Loading 'brms' package (version 2.22.0). Useful instructions can be found by typing help('brms'). A more detailed introduction to the package is available through vignette('brms_overview'). Attaching package: 'brms' The following object is masked from 'package:stats': ar > > test_check("hbsaems") Compiling Stan program... Start sampling SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 6.8e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.68 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 1: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 1: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 1: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 1: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 1: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 1: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 1: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 1: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 1: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 1: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 1: Iteration: 4000 / 4000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.916 seconds (Warm-up) Chain 1: 0.888 seconds (Sampling) Chain 1: 1.804 seconds (Total) Chain 1: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 1.6e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 2: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 2: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 2: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 2: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 2: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 2: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 2: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 2: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 2: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 2: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 2: Iteration: 4000 / 4000 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.677 seconds (Warm-up) Chain 2: 1.912 seconds (Sampling) Chain 2: 2.589 seconds (Total) Chain 2: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 1.8e-05 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.18 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 3: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 3: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 3: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 3: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 3: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 3: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 3: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 3: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 3: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 3: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 3: Iteration: 4000 / 4000 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 0.807 seconds (Warm-up) Chain 3: 1.038 seconds (Sampling) Chain 3: 1.845 seconds (Total) Chain 3: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 2e-05 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.2 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 4: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 4: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 4: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 4: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 4: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 4: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 4: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 4: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 4: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 4: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 4: Iteration: 4000 / 4000 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 1.035 seconds (Warm-up) Chain 4: 0.74 seconds (Sampling) Chain 4: 1.775 seconds (Total) Chain 4: Attaching package: 'mice' The following object is masked from 'package:stats': filter The following objects are masked from 'package:base': cbind, rbind Compiling Stan program... Start sampling SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 7.5e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.75 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 1: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 1: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 1: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 1: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 1: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 1: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 1: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 1: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 1: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 1: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 1: Iteration: 4000 / 4000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 1.035 seconds (Warm-up) Chain 1: 1.513 seconds (Sampling) Chain 1: 2.548 seconds (Total) Chain 1: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 1.7e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.17 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 2: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 2: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 2: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 2: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 2: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 2: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 2: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 2: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 2: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 2: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 2: Iteration: 4000 / 4000 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.821 seconds (Warm-up) Chain 2: 0.711 seconds (Sampling) Chain 2: 1.532 seconds (Total) Chain 2: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 1.6e-05 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 3: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 3: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 3: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 3: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 3: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 3: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 3: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 3: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 3: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 3: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 3: Iteration: 4000 / 4000 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 0.825 seconds (Warm-up) Chain 3: 1.232 seconds (Sampling) Chain 3: 2.057 seconds (Total) Chain 3: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 1.6e-05 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 4: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 4: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 4: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 4: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 4: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 4: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 4: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 4: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 4: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 4: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 4: Iteration: 4000 / 4000 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 0.908 seconds (Warm-up) Chain 4: 0.902 seconds (Sampling) Chain 4: 1.81 seconds (Total) Chain 4: Compiling Stan program... Start sampling SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 6.3e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.63 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 1: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 1: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 1: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 1: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 1: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 1: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 1: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 1: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 1: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 1: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 1: Iteration: 4000 / 4000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.821 seconds (Warm-up) Chain 1: 0.898 seconds (Sampling) Chain 1: 1.719 seconds (Total) Chain 1: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 1.6e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 2: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 2: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 2: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 2: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 2: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 2: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 2: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 2: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 2: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 2: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 2: Iteration: 4000 / 4000 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.84 seconds (Warm-up) Chain 2: 0.799 seconds (Sampling) Chain 2: 1.639 seconds (Total) Chain 2: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 1.6e-05 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 3: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 3: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 3: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 3: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 3: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 3: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 3: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 3: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 3: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 3: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 3: Iteration: 4000 / 4000 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 0.956 seconds (Warm-up) Chain 3: 0.634 seconds (Sampling) Chain 3: 1.59 seconds (Total) Chain 3: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 1.6e-05 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 4: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 4: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 4: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 4: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 4: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 4: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 4: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 4: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 4: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 4: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 4: Iteration: 4000 / 4000 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 0.734 seconds (Warm-up) Chain 4: 0.509 seconds (Sampling) Chain 4: 1.243 seconds (Total) Chain 4: Compiling Stan program... Start sampling SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 6.7e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.67 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 1: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 1: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 1: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 1: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 1: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 1: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 1: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 1: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 1: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 1: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 1: Iteration: 4000 / 4000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.921 seconds (Warm-up) Chain 1: 0.734 seconds (Sampling) Chain 1: 1.655 seconds (Total) Chain 1: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 1.7e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.17 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 2: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 2: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 2: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 2: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 2: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 2: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 2: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 2: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 2: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 2: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 2: Iteration: 4000 / 4000 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 1.169 seconds (Warm-up) Chain 2: 1.896 seconds (Sampling) Chain 2: 3.065 seconds (Total) Chain 2: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 1.7e-05 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.17 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 3: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 3: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 3: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 3: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 3: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 3: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 3: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 3: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 3: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 3: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 3: Iteration: 4000 / 4000 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 0.919 seconds (Warm-up) Chain 3: 0.714 seconds (Sampling) Chain 3: 1.633 seconds (Total) Chain 3: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 1.3e-05 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.13 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 4: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 4: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 4: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 4: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 4: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 4: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 4: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 4: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 4: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 4: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 4: Iteration: 4000 / 4000 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 0.697 seconds (Warm-up) Chain 4: 0.445 seconds (Sampling) Chain 4: 1.142 seconds (Total) Chain 4: Compiling Stan program... Start sampling SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 7.3e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.73 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 1: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 1: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 1: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 1: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 1: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 1: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 1: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 1: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 1: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 1: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 1: Iteration: 4000 / 4000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.991 seconds (Warm-up) Chain 1: 0.819 seconds (Sampling) Chain 1: 1.81 seconds (Total) Chain 1: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 1.4e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.14 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 2: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 2: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 2: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 2: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 2: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 2: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 2: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 2: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 2: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 2: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 2: Iteration: 4000 / 4000 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 1.1 seconds (Warm-up) Chain 2: 4.254 seconds (Sampling) Chain 2: 5.354 seconds (Total) Chain 2: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 1.7e-05 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.17 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 3: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 3: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 3: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 3: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 3: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 3: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 3: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 3: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 3: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 3: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 3: Iteration: 4000 / 4000 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 0.907 seconds (Warm-up) Chain 3: 0.866 seconds (Sampling) Chain 3: 1.773 seconds (Total) Chain 3: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 1.6e-05 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 4: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 4: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 4: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 4: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 4: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 4: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 4: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 4: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 4: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 4: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 4: Iteration: 4000 / 4000 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 1.135 seconds (Warm-up) Chain 4: 0.477 seconds (Sampling) Chain 4: 1.612 seconds (Total) Chain 4: Compiling Stan program... Start sampling SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 9.8e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.98 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 1: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 1: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 1: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 1: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 1: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 1: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 1: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 1: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 1: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 1: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 1: Iteration: 4000 / 4000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 1.292 seconds (Warm-up) Chain 1: 1.311 seconds (Sampling) Chain 1: 2.603 seconds (Total) Chain 1: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 3.4e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.34 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 2: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 2: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 2: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 2: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 2: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 2: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 2: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 2: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 2: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 2: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 2: Iteration: 4000 / 4000 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 1.216 seconds (Warm-up) Chain 2: 1.351 seconds (Sampling) Chain 2: 2.567 seconds (Total) Chain 2: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 4.9e-05 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.49 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 3: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 3: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 3: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 3: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 3: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 3: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 3: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 3: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 3: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 3: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 3: Iteration: 4000 / 4000 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 1.179 seconds (Warm-up) Chain 3: 1.416 seconds (Sampling) Chain 3: 2.595 seconds (Total) Chain 3: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 4.9e-05 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.49 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: Iteration: 1 / 4000 [ 0%] (Warmup) Chain 4: Iteration: 400 / 4000 [ 10%] (Warmup) Chain 4: Iteration: 800 / 4000 [ 20%] (Warmup) Chain 4: Iteration: 1200 / 4000 [ 30%] (Warmup) Chain 4: Iteration: 1600 / 4000 [ 40%] (Warmup) Chain 4: Iteration: 2000 / 4000 [ 50%] (Warmup) Chain 4: Iteration: 2001 / 4000 [ 50%] (Sampling) Chain 4: Iteration: 2400 / 4000 [ 60%] (Sampling) Chain 4: Iteration: 2800 / 4000 [ 70%] (Sampling) Chain 4: Iteration: 3200 / 4000 [ 80%] (Sampling) Chain 4: Iteration: 3600 / 4000 [ 90%] (Sampling) Chain 4: Iteration: 4000 / 4000 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 1.388 seconds (Warm-up) Chain 4: 0.802 seconds (Sampling) Chain 4: 2.19 seconds (Total) Chain 4: Compiling Stan program... Start sampling SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 5.8e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.58 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 500 [ 0%] (Warmup) Chain 1: Iteration: 50 / 500 [ 10%] (Warmup) Chain 1: Iteration: 100 / 500 [ 20%] (Warmup) Chain 1: Iteration: 150 / 500 [ 30%] (Warmup) Chain 1: Iteration: 200 / 500 [ 40%] (Warmup) Chain 1: Iteration: 250 / 500 [ 50%] (Warmup) Chain 1: Iteration: 251 / 500 [ 50%] (Sampling) Chain 1: Iteration: 300 / 500 [ 60%] (Sampling) Chain 1: Iteration: 350 / 500 [ 70%] (Sampling) Chain 1: Iteration: 400 / 500 [ 80%] (Sampling) Chain 1: Iteration: 450 / 500 [ 90%] (Sampling) Chain 1: Iteration: 500 / 500 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.178 seconds (Warm-up) Chain 1: 0.093 seconds (Sampling) Chain 1: 0.271 seconds (Total) Chain 1: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 1.6e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 500 [ 0%] (Warmup) Chain 2: Iteration: 50 / 500 [ 10%] (Warmup) Chain 2: Iteration: 100 / 500 [ 20%] (Warmup) Chain 2: Iteration: 150 / 500 [ 30%] (Warmup) Chain 2: Iteration: 200 / 500 [ 40%] (Warmup) Chain 2: Iteration: 250 / 500 [ 50%] (Warmup) Chain 2: Iteration: 251 / 500 [ 50%] (Sampling) Chain 2: Iteration: 300 / 500 [ 60%] (Sampling) Chain 2: Iteration: 350 / 500 [ 70%] (Sampling) Chain 2: Iteration: 400 / 500 [ 80%] (Sampling) Chain 2: Iteration: 450 / 500 [ 90%] (Sampling) Chain 2: Iteration: 500 / 500 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.173 seconds (Warm-up) Chain 2: 0.112 seconds (Sampling) Chain 2: 0.285 seconds (Total) Chain 2: Setting 'rescor' to TRUE by default for this model Compiling Stan program... Start sampling SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.000186 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.86 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 500 [ 0%] (Warmup) Chain 1: Iteration: 50 / 500 [ 10%] (Warmup) Chain 1: Iteration: 100 / 500 [ 20%] (Warmup) Chain 1: Iteration: 150 / 500 [ 30%] (Warmup) Chain 1: Iteration: 200 / 500 [ 40%] (Warmup) Chain 1: Iteration: 250 / 500 [ 50%] (Warmup) Chain 1: Iteration: 251 / 500 [ 50%] (Sampling) Chain 1: Iteration: 300 / 500 [ 60%] (Sampling) Chain 1: Iteration: 350 / 500 [ 70%] (Sampling) Chain 1: Iteration: 400 / 500 [ 80%] (Sampling) Chain 1: Iteration: 450 / 500 [ 90%] (Sampling) Chain 1: Iteration: 500 / 500 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 2.641 seconds (Warm-up) Chain 1: 0.917 seconds (Sampling) Chain 1: 3.558 seconds (Total) Chain 1: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 7.3e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.73 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 500 [ 0%] (Warmup) Chain 2: Iteration: 50 / 500 [ 10%] (Warmup) Chain 2: Iteration: 100 / 500 [ 20%] (Warmup) Chain 2: Iteration: 150 / 500 [ 30%] (Warmup) Chain 2: Iteration: 200 / 500 [ 40%] (Warmup) Chain 2: Iteration: 250 / 500 [ 50%] (Warmup) Chain 2: Iteration: 251 / 500 [ 50%] (Sampling) Chain 2: Iteration: 300 / 500 [ 60%] (Sampling) Chain 2: Iteration: 350 / 500 [ 70%] (Sampling) Chain 2: Iteration: 400 / 500 [ 80%] (Sampling) Chain 2: Iteration: 450 / 500 [ 90%] (Sampling) Chain 2: Iteration: 500 / 500 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 1.279 seconds (Warm-up) Chain 2: 0.934 seconds (Sampling) Chain 2: 2.213 seconds (Total) Chain 2: [ FAIL 0 | WARN 0 | SKIP 102 | PASS 2 ] ══ Skipped tests (102) ═════════════════════════════════════════════════════════ • On CRAN (102): 'test-hbcc.R:9:3', 'test-hbcc.R:16:3', 'test-hbcc.R:23:3', 'test-hbcc.R:30:3', 'test-hbm-betalogitnorm.R:7:3', 'test-hbm-betalogitnorm.R:34:3', 'test-hbm-betalogitnorm.R:135:3', 'test-hbm-betalogitnorm.R:191:3', 'test-hbm-betalogitnorm.R:202:3', 'test-hbm-betalogitnorm.R:253:3', 'test-hbm-betalogitnorm.R:294:3', 'test-hbm-betalogitnorm.R:355:3', 'test-hbm-betalogitnorm.R:399:3', 'test-hbm-binlogitnorm.R:7:3', 'test-hbm-binlogitnorm.R:19:3', 'test-hbm-binlogitnorm.R:29:3', 'test-hbm-binlogitnorm.R:39:3', 'test-hbm-binlogitnorm.R:50:3', 'test-hbm-binlogitnorm.R:62:3', 'test-hbm-binlogitnorm.R:75:3', 'test-hbm-binlogitnorm.R:88:3', 'test-hbm-binlogitnorm.R:102:3', 'test-hbm-binlogitnorm.R:117:3', 'test-hbm-binlogitnorm.R:131:3', 'test-hbm-binlogitnorm.R:144:3', 'test-hbm-binlogitnorm.R:156:3', 'test-hbm-binlogitnorm.R:172:3', 'test-hbm-binlogitnorm.R:187:3', 'test-hbm-binlogitnorm.R:202:3', 'test-hbm-binlogitnorm.R:218:3', 'test-hbm-binlogitnorm.R:234:3', 'test-hbm-binlogitnorm.R:247:3', 'test-hbm-binlogitnorm.R:261:3', 'test-hbm-binlogitnorm.R:341:3', 'test-hbm-binlogitnorm.R:360:3', 'test-hbm-binlogitnorm.R:377:3', 'test-hbm-binlogitnorm.R:395:3', 'test-hbm-binlogitnorm.R:414:3', 'test-hbm-lnln.R:7:3', 'test-hbm-lnln.R:21:3', 'test-hbm-lnln.R:33:3', 'test-hbm-lnln.R:46:3', 'test-hbm-lnln.R:72:3', 'test-hbm-lnln.R:88:3', 'test-hbm-lnln.R:102:3', 'test-hbm-lnln.R:115:3', 'test-hbm-lnln.R:129:3', 'test-hbm-lnln.R:146:3', 'test-hbm-lnln.R:162:3', 'test-hbm-lnln.R:178:3', 'test-hbm-lnln.R:197:3', 'test-hbm-lnln.R:213:3', 'test-hbm-lnln.R:229:3', 'test-hbm-lnln.R:246:3', 'test-hbm-lnln.R:261:3', 'test-hbm-lnln.R:278:3', 'test-hbm-lnln.R:294:3', 'test-hbm-lnln.R:310:3', 'test-hbm-lnln.R:327:3', 'test-hbm-lnln.R:425:3', 'test-hbm.R:8:3', 'test-hbm.R:18:3', 'test-hbm.R:34:3', 'test-hbm.R:72:3', 'test-hbm.R:95:3', 'test-hbm.R:139:3', 'test-hbm.R:179:3', 'test-hbm.R:194:3', 'test-hbm.R:224:3', 'test-hbm.R:236:3', 'test-hbm.R:248:3', 'test-hbm.R:261:3', 'test-hbm.R:275:3', 'test-hbm.R:286:3', 'test-hbm.R:299:3', 'test-hbm.R:361:3', 'test-hbm.R:376:3', 'test-hbmc.R:25:3', 'test-hbmc.R:34:3', 'test-hbmc.R:40:3', 'test-hbmc.R:70:3', 'test-hbpc.R:9:3', 'test-hbpc.R:19:3', 'test-hbpc.R:29:3', 'test-hbpc.R:38:3', 'test-hbpc.R:47:3', 'test-hbpc.R:66:3', 'test-hbpc.R:83:3', 'test-hbpc.R:110:3', 'test-hbsae.R:9:3', 'test-hbsae.R:21:3', 'test-hbsae.R:27:3', 'test-hbsae.R:35:3', 'test-hbsae.R:61:3', 'test-hbsae.R:68:3', 'test-hbsae.R:75:3', 'test-run_sae_app.R:4:3', 'test-run_sae_app.R:22:3', 'test-run_sae_app.R:28:3', 'test-update_hbm.R:21:3', 'test-update_hbm.R:42:3', 'test-update_hbm.R:67:3' [ FAIL 0 | WARN 0 | SKIP 102 | PASS 2 ] > > proc.time() user system elapsed 95.65 3.06 671.31