* installing *source* package ‘hbamr’ ... ** using staged installation ** libs using C++ compiler: ‘Debian clang version 17.0.6 (3)’ using C++17 clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 239 | int count = 0; | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ 24 warnings generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -c stanExports_BAM.cc -o stanExports_BAM.o In file included from stanExports_BAM.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from stanExports_BAM.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:48:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 48 | Rprintf("%.*s", n, s); | ~~^~ ~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:71:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 71 | REprintf("%.*s", n, s); | ~~^~ ~ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 239 | int count = 0; | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_cholesky_factor_corr.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_unit_vector.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/abs.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypot.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/apply_scalar_binary.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_matching_dims.hpp:33:8: warning: unused variable 'error' [-Wunused-variable] 33 | bool error = false; | ^~~~~ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:50: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/hmm_check.hpp:33:7: warning: unused variable 'n_transitions' [-Wunused-variable] 33 | int n_transitions = log_omegas.cols() - 1; | ^~~~~~~~~~~~~ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:118: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/gp_matern52_cov.hpp:275:10: warning: unused variable 'neg_root_5' [-Wunused-variable] 275 | double neg_root_5 = -root_5; | ^~~~~~~~~~ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:183: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/log_mix.hpp:86:13: warning: unused variable 'N' [-Wunused-variable] 86 | const int N = stan::math::size(theta); | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:87: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_cdf.hpp:82:10: warning: unused variable 'N' [-Wunused-variable] 82 | size_t N = max_size(y, mu, sigma); | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:128: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:98:7: warning: unused variable 'n' [-Wunused-variable] 98 | int n = G.rows(); // number of states | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:139: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/hmm_marginal.hpp:26:13: warning: unused variable 'n_states' [-Wunused-variable] 26 | const int n_states = omegas.rows(); | ^~~~~~~~ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:315: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/std_normal_rng.hpp:23:22: warning: unused variable 'function' [-Wunused-variable] 23 | static const char* function = "std_normal_rng"; | ^~~~~~~~ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:335: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:72:10: warning: unused variable 'ck' [-Wunused-variable] 72 | double ck = 50; | ^~ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 1252 | int ret = stan::services::error_codes::CONFIG; | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:610:13: warning: unused variable 'cols' [-Wunused-variable] 610 | const int cols = rvalue_index_size(idxs.tail_.head_, x_ref.cols()); | ^~~~ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:10: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:241:22: warning: unused variable 'x_cols' [-Wunused-variable] 241 | const Eigen::Index x_cols = x.cols(); | ^~~~~~ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:29: note: while substituting into a lambda expression here 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_minus_equal.hpp:24:16: note: in instantiation of function template specialization 'stan::math::operator-' requested here 24 | vi_ = (*this - b).vi_; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/complex_base.hpp:136:9: note: in instantiation of member function 'stan::math::var_value::operator-=' requested here 136 | re_ -= x; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:24:5: note: in instantiation of function template specialization 'stan::math::complex_base>::operator-=' requested here 24 | y -= rhs; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:55:20: note: in instantiation of function template specialization 'stan::math::internal::complex_subtract, int>' requested here 55 | return internal::complex_subtract(x, y); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/acosh.hpp:105:31: note: in instantiation of function template specialization 'stan::math::operator-, int>' requested here 105 | auto y = log(z + sqrt(z * z - 1)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/acosh.hpp:94:32: note: in instantiation of function template specialization 'stan::math::internal::complex_acosh>' requested here 94 | return stan::math::internal::complex_acosh(z); | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/grad_inc_beta.hpp:45:43: note: in instantiation of function template specialization 'stan::math::operator+' requested here 45 | grad_2F1(dF1, dF2, a + b, var(1.0), a + 1, z); | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/trigamma.hpp:63:31: note: in instantiation of function template specialization 'stan::math::operator+' requested here 63 | value = -trigamma_impl(-x + 1.0) + square(pi() / sin(-pi() * x)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/trigamma.hpp:23:44: note: in instantiation of function template specialization 'stan::math::trigamma_impl>' requested here 23 | inline var trigamma(const var& u) { return trigamma_impl(u); } | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:115:24: note: in instantiation of function template specialization 'stan::math::operator-' requested here 115 | lp += log(ub - lb) - x - 2 * log1p(exp_minus_x); | ^ ./stanExports_BAM.h:450:30: note: in instantiation of function template specialization 'stan::math::lub_constrain, double, double, stan::math::var_value>' requested here 450 | thetal = stan::math::lub_constrain(thetal, -1.1, -.9, lp__); | ^ ./stanExports_BAM.h:1158:14: note: in instantiation of function template specialization 'model_BAM_namespace::model_BAM::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1158 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_BAM_namespace::model_BAM::log_prob>' requested here 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_BAM.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/ub_constrain.hpp:77:13: note: in instantiation of function template specialization 'stan::math::operator-' requested here 77 | return ub - exp(x); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:107:12: note: in instantiation of function template specialization 'stan::math::ub_constrain, int, stan::math::var_value>' requested here 107 | return ub_constrain(x, ub, lp); | ^ ./stanExports_BAM.h:484:26: note: in instantiation of function template specialization 'stan::math::lub_constrain, int, int, stan::math::var_value>' requested here 484 | nu = stan::math::lub_constrain(nu, 3, 30, lp__); | ^ ./stanExports_BAM.h:1158:14: note: in instantiation of function template specialization 'model_BAM_namespace::model_BAM::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1158 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_BAM.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:59: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:55: note: while substituting into a lambda expression here 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_BAM.h:567:11: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 567 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_BAM.h:1158:14: note: in instantiation of function template specialization 'model_BAM_namespace::model_BAM::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1158 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_BAM.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:60: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:56: note: while substituting into a lambda expression here 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_BAM.h:567:11: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 567 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_BAM.h:1158:14: note: in instantiation of function template specialization 'model_BAM_namespace::model_BAM::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1158 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_BAM.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:59: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: 'static' function 'set_zero_all_adjoints' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration] 14 | static void set_zero_all_adjoints() { | ^~~~~~~~~~~~~~~~~~~~~ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:110: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/generalized_inverse.hpp:34:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 34 | using value_t = value_type_t; | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:319: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/tail.hpp:46:9: warning: unused type alias 'idx_t' [-Wunused-local-typedef] 46 | using idx_t = index_type_t>; | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_lpmf.hpp:59:9: warning: unused type alias 'T_y_val' [-Wunused-local-typedef] 59 | using T_y_val = | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_lpdf.hpp:50:9: warning: unused type alias 'T_partials_matrix' [-Wunused-local-typedef] 50 | using T_partials_matrix = Eigen::Matrix; | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_lpdf.hpp:55:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 55 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:63: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_lpdf.hpp:45:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 45 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:74: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef] 60 | using T_partials_vec = typename Eigen::Matrix; | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:91: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_lpdf.hpp:44:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 44 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:111: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/frechet_cdf.hpp:30:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 30 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:245: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_lpmf.hpp:76:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 76 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:277: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_lpmf.hpp:62:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef] 62 | using T_alpha_val = typename std::conditional_t< | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:32: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:83:11: warning: unused type alias 'Block_' [-Wunused-local-typedef] 83 | using Block_ = Eigen::Block; | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:32:9: warning: unused type alias 'T_scalar' [-Wunused-local-typedef] 32 | using T_scalar = value_type_t; | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:64:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 64 | using value_t = value_type_t; | ^ In file included from stanExports_BAM.cc:5: In file included from ./stanExports_BAM.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:8: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/lvalue_varmat.hpp:349:9: warning: unused type alias 'pair_type' [-Wunused-local-typedef] 349 | using pair_type = std::pair; | ^ 69 warnings generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -c stanExports_FBAM_MINI.cc -o stanExports_FBAM_MINI.o In file included from stanExports_FBAM_MINI.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from stanExports_FBAM_MINI.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:48:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 48 | Rprintf("%.*s", n, s); | ~~^~ ~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:71:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 71 | REprintf("%.*s", n, s); | ~~^~ ~ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 239 | int count = 0; | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_cholesky_factor_corr.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_unit_vector.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/abs.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypot.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/apply_scalar_binary.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_matching_dims.hpp:33:8: warning: unused variable 'error' [-Wunused-variable] 33 | bool error = false; | ^~~~~ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:50: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/hmm_check.hpp:33:7: warning: unused variable 'n_transitions' [-Wunused-variable] 33 | int n_transitions = log_omegas.cols() - 1; | ^~~~~~~~~~~~~ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:118: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/gp_matern52_cov.hpp:275:10: warning: unused variable 'neg_root_5' [-Wunused-variable] 275 | double neg_root_5 = -root_5; | ^~~~~~~~~~ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:183: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/log_mix.hpp:86:13: warning: unused variable 'N' [-Wunused-variable] 86 | const int N = stan::math::size(theta); | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:87: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_cdf.hpp:82:10: warning: unused variable 'N' [-Wunused-variable] 82 | size_t N = max_size(y, mu, sigma); | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:128: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:98:7: warning: unused variable 'n' [-Wunused-variable] 98 | int n = G.rows(); // number of states | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:139: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/hmm_marginal.hpp:26:13: warning: unused variable 'n_states' [-Wunused-variable] 26 | const int n_states = omegas.rows(); | ^~~~~~~~ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:315: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/std_normal_rng.hpp:23:22: warning: unused variable 'function' [-Wunused-variable] 23 | static const char* function = "std_normal_rng"; | ^~~~~~~~ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:335: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:72:10: warning: unused variable 'ck' [-Wunused-variable] 72 | double ck = 50; | ^~ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 1252 | int ret = stan::services::error_codes::CONFIG; | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:610:13: warning: unused variable 'cols' [-Wunused-variable] 610 | const int cols = rvalue_index_size(idxs.tail_.head_, x_ref.cols()); | ^~~~ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:10: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:241:22: warning: unused variable 'x_cols' [-Wunused-variable] 241 | const Eigen::Index x_cols = x.cols(); | ^~~~~~ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:29: note: while substituting into a lambda expression here 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_minus_equal.hpp:24:16: note: in instantiation of function template specialization 'stan::math::operator-' requested here 24 | vi_ = (*this - b).vi_; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/complex_base.hpp:136:9: note: in instantiation of member function 'stan::math::var_value::operator-=' requested here 136 | re_ -= x; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:24:5: note: in instantiation of function template specialization 'stan::math::complex_base>::operator-=' requested here 24 | y -= rhs; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:55:20: note: in instantiation of function template specialization 'stan::math::internal::complex_subtract, int>' requested here 55 | return internal::complex_subtract(x, y); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/acosh.hpp:105:31: note: in instantiation of function template specialization 'stan::math::operator-, int>' requested here 105 | auto y = log(z + sqrt(z * z - 1)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/acosh.hpp:94:32: note: in instantiation of function template specialization 'stan::math::internal::complex_acosh>' requested here 94 | return stan::math::internal::complex_acosh(z); | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/grad_inc_beta.hpp:45:43: note: in instantiation of function template specialization 'stan::math::operator+' requested here 45 | grad_2F1(dF1, dF2, a + b, var(1.0), a + 1, z); | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/trigamma.hpp:63:31: note: in instantiation of function template specialization 'stan::math::operator+' requested here 63 | value = -trigamma_impl(-x + 1.0) + square(pi() / sin(-pi() * x)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/trigamma.hpp:23:44: note: in instantiation of function template specialization 'stan::math::trigamma_impl>' requested here 23 | inline var trigamma(const var& u) { return trigamma_impl(u); } | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/ub_constrain.hpp:77:13: note: in instantiation of function template specialization 'stan::math::operator-' requested here 77 | return ub - exp(x); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:107:12: note: in instantiation of function template specialization 'stan::math::ub_constrain, int, stan::math::var_value>' requested here 107 | return ub_constrain(x, ub, lp); | ^ ./stanExports_FBAM_MINI.h:537:25: note: in instantiation of function template specialization 'stan::math::lub_constrain, int, int, stan::math::var_value>' requested here 537 | stan::math::lub_constrain(lambda[(sym1__ - 1)], 0, 1, lp__), | ^ ./stanExports_FBAM_MINI.h:1454:14: note: in instantiation of function template specialization 'model_FBAM_MINI_namespace::model_FBAM_MINI::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1454 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_FBAM_MINI.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:115:24: note: in instantiation of function template specialization 'stan::math::operator-' requested here 115 | lp += log(ub - lb) - x - 2 * log1p(exp_minus_x); | ^ ./stanExports_FBAM_MINI.h:537:25: note: in instantiation of function template specialization 'stan::math::lub_constrain, int, int, stan::math::var_value>' requested here 537 | stan::math::lub_constrain(lambda[(sym1__ - 1)], 0, 1, lp__), | ^ ./stanExports_FBAM_MINI.h:1454:14: note: in instantiation of function template specialization 'model_FBAM_MINI_namespace::model_FBAM_MINI::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1454 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_FBAM_MINI_namespace::model_FBAM_MINI::log_prob>' requested here 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_FBAM_MINI.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:59: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:55: note: while substituting into a lambda expression here 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_FBAM_MINI.h:636:13: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 636 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_FBAM_MINI.h:1454:14: note: in instantiation of function template specialization 'model_FBAM_MINI_namespace::model_FBAM_MINI::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1454 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_FBAM_MINI.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:60: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:56: note: while substituting into a lambda expression here 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_FBAM_MINI.h:636:13: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 636 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_FBAM_MINI.h:1454:14: note: in instantiation of function template specialization 'model_FBAM_MINI_namespace::model_FBAM_MINI::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1454 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_FBAM_MINI.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:59: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: 'static' function 'set_zero_all_adjoints' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration] 14 | static void set_zero_all_adjoints() { | ^~~~~~~~~~~~~~~~~~~~~ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:110: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/generalized_inverse.hpp:34:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 34 | using value_t = value_type_t; | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:319: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/tail.hpp:46:9: warning: unused type alias 'idx_t' [-Wunused-local-typedef] 46 | using idx_t = index_type_t>; | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_lpmf.hpp:59:9: warning: unused type alias 'T_y_val' [-Wunused-local-typedef] 59 | using T_y_val = | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_lpdf.hpp:50:9: warning: unused type alias 'T_partials_matrix' [-Wunused-local-typedef] 50 | using T_partials_matrix = Eigen::Matrix; | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_lpdf.hpp:55:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 55 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:63: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_lpdf.hpp:45:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 45 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:74: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef] 60 | using T_partials_vec = typename Eigen::Matrix; | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:91: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_lpdf.hpp:44:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 44 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:111: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/frechet_cdf.hpp:30:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 30 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:245: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_lpmf.hpp:76:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 76 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:277: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_lpmf.hpp:62:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef] 62 | using T_alpha_val = typename std::conditional_t< | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:32: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:83:11: warning: unused type alias 'Block_' [-Wunused-local-typedef] 83 | using Block_ = Eigen::Block; | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:32:9: warning: unused type alias 'T_scalar' [-Wunused-local-typedef] 32 | using T_scalar = value_type_t; | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:64:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 64 | using value_t = value_type_t; | ^ In file included from stanExports_FBAM_MINI.cc:5: In file included from ./stanExports_FBAM_MINI.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:8: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/lvalue_varmat.hpp:349:9: warning: unused type alias 'pair_type' [-Wunused-local-typedef] 349 | using pair_type = std::pair; | ^ 69 warnings generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -c stanExports_FBAM_MULTI.cc -o stanExports_FBAM_MULTI.o In file included from stanExports_FBAM_MULTI.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from stanExports_FBAM_MULTI.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:48:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 48 | Rprintf("%.*s", n, s); | ~~^~ ~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:71:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 71 | REprintf("%.*s", n, s); | ~~^~ ~ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 239 | int count = 0; | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_cholesky_factor_corr.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_unit_vector.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/abs.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypot.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/apply_scalar_binary.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_matching_dims.hpp:33:8: warning: unused variable 'error' [-Wunused-variable] 33 | bool error = false; | ^~~~~ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:50: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/hmm_check.hpp:33:7: warning: unused variable 'n_transitions' [-Wunused-variable] 33 | int n_transitions = log_omegas.cols() - 1; | ^~~~~~~~~~~~~ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:118: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/gp_matern52_cov.hpp:275:10: warning: unused variable 'neg_root_5' [-Wunused-variable] 275 | double neg_root_5 = -root_5; | ^~~~~~~~~~ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:183: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/log_mix.hpp:86:13: warning: unused variable 'N' [-Wunused-variable] 86 | const int N = stan::math::size(theta); | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:87: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_cdf.hpp:82:10: warning: unused variable 'N' [-Wunused-variable] 82 | size_t N = max_size(y, mu, sigma); | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:128: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:98:7: warning: unused variable 'n' [-Wunused-variable] 98 | int n = G.rows(); // number of states | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:139: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/hmm_marginal.hpp:26:13: warning: unused variable 'n_states' [-Wunused-variable] 26 | const int n_states = omegas.rows(); | ^~~~~~~~ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:315: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/std_normal_rng.hpp:23:22: warning: unused variable 'function' [-Wunused-variable] 23 | static const char* function = "std_normal_rng"; | ^~~~~~~~ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:335: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:72:10: warning: unused variable 'ck' [-Wunused-variable] 72 | double ck = 50; | ^~ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 1252 | int ret = stan::services::error_codes::CONFIG; | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:610:13: warning: unused variable 'cols' [-Wunused-variable] 610 | const int cols = rvalue_index_size(idxs.tail_.head_, x_ref.cols()); | ^~~~ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:10: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:241:22: warning: unused variable 'x_cols' [-Wunused-variable] 241 | const Eigen::Index x_cols = x.cols(); | ^~~~~~ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:29: note: while substituting into a lambda expression here 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_minus_equal.hpp:24:16: note: in instantiation of function template specialization 'stan::math::operator-' requested here 24 | vi_ = (*this - b).vi_; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/complex_base.hpp:136:9: note: in instantiation of member function 'stan::math::var_value::operator-=' requested here 136 | re_ -= x; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:24:5: note: in instantiation of function template specialization 'stan::math::complex_base>::operator-=' requested here 24 | y -= rhs; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:55:20: note: in instantiation of function template specialization 'stan::math::internal::complex_subtract, int>' requested here 55 | return internal::complex_subtract(x, y); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/acosh.hpp:105:31: note: in instantiation of function template specialization 'stan::math::operator-, int>' requested here 105 | auto y = log(z + sqrt(z * z - 1)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/acosh.hpp:94:32: note: in instantiation of function template specialization 'stan::math::internal::complex_acosh>' requested here 94 | return stan::math::internal::complex_acosh(z); | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/grad_inc_beta.hpp:45:43: note: in instantiation of function template specialization 'stan::math::operator+' requested here 45 | grad_2F1(dF1, dF2, a + b, var(1.0), a + 1, z); | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/trigamma.hpp:63:31: note: in instantiation of function template specialization 'stan::math::operator+' requested here 63 | value = -trigamma_impl(-x + 1.0) + square(pi() / sin(-pi() * x)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/trigamma.hpp:23:44: note: in instantiation of function template specialization 'stan::math::trigamma_impl>' requested here 23 | inline var trigamma(const var& u) { return trigamma_impl(u); } | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/ub_constrain.hpp:77:13: note: in instantiation of function template specialization 'stan::math::operator-' requested here 77 | return ub - exp(x); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:107:12: note: in instantiation of function template specialization 'stan::math::ub_constrain, int, stan::math::var_value>' requested here 107 | return ub_constrain(x, ub, lp); | ^ ./stanExports_FBAM_MULTI.h:674:25: note: in instantiation of function template specialization 'stan::math::lub_constrain, int, int, stan::math::var_value>' requested here 674 | stan::math::lub_constrain(lambda[(sym1__ - 1)], 0, 1, lp__), | ^ ./stanExports_FBAM_MULTI.h:1775:14: note: in instantiation of function template specialization 'model_FBAM_MULTI_namespace::model_FBAM_MULTI::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1775 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_FBAM_MULTI.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:115:24: note: in instantiation of function template specialization 'stan::math::operator-' requested here 115 | lp += log(ub - lb) - x - 2 * log1p(exp_minus_x); | ^ ./stanExports_FBAM_MULTI.h:674:25: note: in instantiation of function template specialization 'stan::math::lub_constrain, int, int, stan::math::var_value>' requested here 674 | stan::math::lub_constrain(lambda[(sym1__ - 1)], 0, 1, lp__), | ^ ./stanExports_FBAM_MULTI.h:1775:14: note: in instantiation of function template specialization 'model_FBAM_MULTI_namespace::model_FBAM_MULTI::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1775 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_FBAM_MULTI_namespace::model_FBAM_MULTI::log_prob>' requested here 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_FBAM_MULTI.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:59: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:55: note: while substituting into a lambda expression here 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_FBAM_MULTI.h:791:13: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 791 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_FBAM_MULTI.h:1775:14: note: in instantiation of function template specialization 'model_FBAM_MULTI_namespace::model_FBAM_MULTI::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1775 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_FBAM_MULTI.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:60: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:56: note: while substituting into a lambda expression here 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_FBAM_MULTI.h:791:13: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 791 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_FBAM_MULTI.h:1775:14: note: in instantiation of function template specialization 'model_FBAM_MULTI_namespace::model_FBAM_MULTI::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1775 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_FBAM_MULTI.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:59: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: 'static' function 'set_zero_all_adjoints' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration] 14 | static void set_zero_all_adjoints() { | ^~~~~~~~~~~~~~~~~~~~~ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:110: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/generalized_inverse.hpp:34:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 34 | using value_t = value_type_t; | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:319: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/tail.hpp:46:9: warning: unused type alias 'idx_t' [-Wunused-local-typedef] 46 | using idx_t = index_type_t>; | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_lpmf.hpp:59:9: warning: unused type alias 'T_y_val' [-Wunused-local-typedef] 59 | using T_y_val = | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_lpdf.hpp:50:9: warning: unused type alias 'T_partials_matrix' [-Wunused-local-typedef] 50 | using T_partials_matrix = Eigen::Matrix; | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_lpdf.hpp:55:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 55 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:63: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_lpdf.hpp:45:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 45 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:74: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef] 60 | using T_partials_vec = typename Eigen::Matrix; | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:91: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_lpdf.hpp:44:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 44 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:111: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/frechet_cdf.hpp:30:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 30 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:245: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_lpmf.hpp:76:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 76 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:277: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_lpmf.hpp:62:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef] 62 | using T_alpha_val = typename std::conditional_t< | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:32: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:83:11: warning: unused type alias 'Block_' [-Wunused-local-typedef] 83 | using Block_ = Eigen::Block; | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:32:9: warning: unused type alias 'T_scalar' [-Wunused-local-typedef] 32 | using T_scalar = value_type_t; | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:64:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 64 | using value_t = value_type_t; | ^ In file included from stanExports_FBAM_MULTI.cc:5: In file included from ./stanExports_FBAM_MULTI.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:8: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/lvalue_varmat.hpp:349:9: warning: unused type alias 'pair_type' [-Wunused-local-typedef] 349 | using pair_type = std::pair; | ^ 69 warnings generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -c stanExports_FBAM_MULTI_NF.cc -o stanExports_FBAM_MULTI_NF.o In file included from stanExports_FBAM_MULTI_NF.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from stanExports_FBAM_MULTI_NF.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:48:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 48 | Rprintf("%.*s", n, s); | ~~^~ ~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:71:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 71 | REprintf("%.*s", n, s); | ~~^~ ~ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 239 | int count = 0; | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_cholesky_factor_corr.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_unit_vector.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/abs.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypot.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/apply_scalar_binary.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_matching_dims.hpp:33:8: warning: unused variable 'error' [-Wunused-variable] 33 | bool error = false; | ^~~~~ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:50: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/hmm_check.hpp:33:7: warning: unused variable 'n_transitions' [-Wunused-variable] 33 | int n_transitions = log_omegas.cols() - 1; | ^~~~~~~~~~~~~ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:118: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/gp_matern52_cov.hpp:275:10: warning: unused variable 'neg_root_5' [-Wunused-variable] 275 | double neg_root_5 = -root_5; | ^~~~~~~~~~ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:183: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/log_mix.hpp:86:13: warning: unused variable 'N' [-Wunused-variable] 86 | const int N = stan::math::size(theta); | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:87: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_cdf.hpp:82:10: warning: unused variable 'N' [-Wunused-variable] 82 | size_t N = max_size(y, mu, sigma); | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:128: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:98:7: warning: unused variable 'n' [-Wunused-variable] 98 | int n = G.rows(); // number of states | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:139: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/hmm_marginal.hpp:26:13: warning: unused variable 'n_states' [-Wunused-variable] 26 | const int n_states = omegas.rows(); | ^~~~~~~~ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:315: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/std_normal_rng.hpp:23:22: warning: unused variable 'function' [-Wunused-variable] 23 | static const char* function = "std_normal_rng"; | ^~~~~~~~ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:335: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:72:10: warning: unused variable 'ck' [-Wunused-variable] 72 | double ck = 50; | ^~ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 1252 | int ret = stan::services::error_codes::CONFIG; | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:610:13: warning: unused variable 'cols' [-Wunused-variable] 610 | const int cols = rvalue_index_size(idxs.tail_.head_, x_ref.cols()); | ^~~~ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:10: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:241:22: warning: unused variable 'x_cols' [-Wunused-variable] 241 | const Eigen::Index x_cols = x.cols(); | ^~~~~~ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:29: note: while substituting into a lambda expression here 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_minus_equal.hpp:24:16: note: in instantiation of function template specialization 'stan::math::operator-' requested here 24 | vi_ = (*this - b).vi_; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/complex_base.hpp:136:9: note: in instantiation of member function 'stan::math::var_value::operator-=' requested here 136 | re_ -= x; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:24:5: note: in instantiation of function template specialization 'stan::math::complex_base>::operator-=' requested here 24 | y -= rhs; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:55:20: note: in instantiation of function template specialization 'stan::math::internal::complex_subtract, int>' requested here 55 | return internal::complex_subtract(x, y); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/acosh.hpp:105:31: note: in instantiation of function template specialization 'stan::math::operator-, int>' requested here 105 | auto y = log(z + sqrt(z * z - 1)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/acosh.hpp:94:32: note: in instantiation of function template specialization 'stan::math::internal::complex_acosh>' requested here 94 | return stan::math::internal::complex_acosh(z); | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/grad_inc_beta.hpp:45:43: note: in instantiation of function template specialization 'stan::math::operator+' requested here 45 | grad_2F1(dF1, dF2, a + b, var(1.0), a + 1, z); | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/trigamma.hpp:63:31: note: in instantiation of function template specialization 'stan::math::operator+' requested here 63 | value = -trigamma_impl(-x + 1.0) + square(pi() / sin(-pi() * x)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/trigamma.hpp:23:44: note: in instantiation of function template specialization 'stan::math::trigamma_impl>' requested here 23 | inline var trigamma(const var& u) { return trigamma_impl(u); } | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:59: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:55: note: while substituting into a lambda expression here 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_FBAM_MULTI_NF.h:698:11: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 698 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_FBAM_MULTI_NF.h:1345:14: note: in instantiation of function template specialization 'model_FBAM_MULTI_NF_namespace::model_FBAM_MULTI_NF::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1345 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_FBAM_MULTI_NF.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:60: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:56: note: while substituting into a lambda expression here 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_FBAM_MULTI_NF.h:698:11: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 698 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_FBAM_MULTI_NF.h:1345:14: note: in instantiation of function template specialization 'model_FBAM_MULTI_NF_namespace::model_FBAM_MULTI_NF::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1345 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_FBAM_MULTI_NF.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_simplex.hpp:43:18: note: in instantiation of function template specialization 'stan::math::operator-' requested here 43 | if (!(fabs(1.0 - theta_ref.sum()) <= CONSTRAINT_TOLERANCE)) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:77:5: note: in instantiation of function template specialization 'stan::math::check_simplex, -1, 1>, nullptr>' requested here 77 | check_simplex(function, "probabilities", theta_vec[t]); | ^ ./stanExports_FBAM_MULTI_NF.h:713:11: note: in instantiation of function template specialization 'stan::math::dirichlet_lpdf, -1, 1>, Eigen::CwiseNullaryOp, Eigen::Matrix>>' requested here 713 | dirichlet_lpdf(mu_alpha_raw, rep_vector(50, G))); | ^ ./stanExports_FBAM_MULTI_NF.h:1345:14: note: in instantiation of function template specialization 'model_FBAM_MULTI_NF_namespace::model_FBAM_MULTI_NF::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1345 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_FBAM_MULTI_NF.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:59: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: 'static' function 'set_zero_all_adjoints' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration] 14 | static void set_zero_all_adjoints() { | ^~~~~~~~~~~~~~~~~~~~~ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:110: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/generalized_inverse.hpp:34:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 34 | using value_t = value_type_t; | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:319: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/tail.hpp:46:9: warning: unused type alias 'idx_t' [-Wunused-local-typedef] 46 | using idx_t = index_type_t>; | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_lpmf.hpp:59:9: warning: unused type alias 'T_y_val' [-Wunused-local-typedef] 59 | using T_y_val = | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_lpdf.hpp:50:9: warning: unused type alias 'T_partials_matrix' [-Wunused-local-typedef] 50 | using T_partials_matrix = Eigen::Matrix; | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_lpdf.hpp:55:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 55 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:63: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_lpdf.hpp:45:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 45 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:74: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef] 60 | using T_partials_vec = typename Eigen::Matrix; | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:91: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_lpdf.hpp:44:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 44 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:111: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/frechet_cdf.hpp:30:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 30 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:245: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_lpmf.hpp:76:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 76 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:277: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_lpmf.hpp:62:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef] 62 | using T_alpha_val = typename std::conditional_t< | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:32: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:83:11: warning: unused type alias 'Block_' [-Wunused-local-typedef] 83 | using Block_ = Eigen::Block; | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:32:9: warning: unused type alias 'T_scalar' [-Wunused-local-typedef] 32 | using T_scalar = value_type_t; | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:64:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 64 | using value_t = value_type_t; | ^ In file included from stanExports_FBAM_MULTI_NF.cc:5: In file included from ./stanExports_FBAM_MULTI_NF.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:8: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/lvalue_varmat.hpp:349:9: warning: unused type alias 'pair_type' [-Wunused-local-typedef] 349 | using pair_type = std::pair; | ^ 68 warnings generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -c stanExports_HBAM.cc -o stanExports_HBAM.o In file included from stanExports_HBAM.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from stanExports_HBAM.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:48:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 48 | Rprintf("%.*s", n, s); | ~~^~ ~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:71:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 71 | REprintf("%.*s", n, s); | ~~^~ ~ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 239 | int count = 0; | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_cholesky_factor_corr.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_unit_vector.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/abs.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypot.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/apply_scalar_binary.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_matching_dims.hpp:33:8: warning: unused variable 'error' [-Wunused-variable] 33 | bool error = false; | ^~~~~ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:50: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/hmm_check.hpp:33:7: warning: unused variable 'n_transitions' [-Wunused-variable] 33 | int n_transitions = log_omegas.cols() - 1; | ^~~~~~~~~~~~~ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:118: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/gp_matern52_cov.hpp:275:10: warning: unused variable 'neg_root_5' [-Wunused-variable] 275 | double neg_root_5 = -root_5; | ^~~~~~~~~~ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:183: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/log_mix.hpp:86:13: warning: unused variable 'N' [-Wunused-variable] 86 | const int N = stan::math::size(theta); | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:87: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_cdf.hpp:82:10: warning: unused variable 'N' [-Wunused-variable] 82 | size_t N = max_size(y, mu, sigma); | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:128: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:98:7: warning: unused variable 'n' [-Wunused-variable] 98 | int n = G.rows(); // number of states | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:139: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/hmm_marginal.hpp:26:13: warning: unused variable 'n_states' [-Wunused-variable] 26 | const int n_states = omegas.rows(); | ^~~~~~~~ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:315: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/std_normal_rng.hpp:23:22: warning: unused variable 'function' [-Wunused-variable] 23 | static const char* function = "std_normal_rng"; | ^~~~~~~~ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:335: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:72:10: warning: unused variable 'ck' [-Wunused-variable] 72 | double ck = 50; | ^~ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 1252 | int ret = stan::services::error_codes::CONFIG; | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:610:13: warning: unused variable 'cols' [-Wunused-variable] 610 | const int cols = rvalue_index_size(idxs.tail_.head_, x_ref.cols()); | ^~~~ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:10: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:241:22: warning: unused variable 'x_cols' [-Wunused-variable] 241 | const Eigen::Index x_cols = x.cols(); | ^~~~~~ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:29: note: while substituting into a lambda expression here 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_minus_equal.hpp:24:16: note: in instantiation of function template specialization 'stan::math::operator-' requested here 24 | vi_ = (*this - b).vi_; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/complex_base.hpp:136:9: note: in instantiation of member function 'stan::math::var_value::operator-=' requested here 136 | re_ -= x; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:24:5: note: in instantiation of function template specialization 'stan::math::complex_base>::operator-=' requested here 24 | y -= rhs; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:55:20: note: in instantiation of function template specialization 'stan::math::internal::complex_subtract, int>' requested here 55 | return internal::complex_subtract(x, y); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/acosh.hpp:105:31: note: in instantiation of function template specialization 'stan::math::operator-, int>' requested here 105 | auto y = log(z + sqrt(z * z - 1)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/acosh.hpp:94:32: note: in instantiation of function template specialization 'stan::math::internal::complex_acosh>' requested here 94 | return stan::math::internal::complex_acosh(z); | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/grad_inc_beta.hpp:45:43: note: in instantiation of function template specialization 'stan::math::operator+' requested here 45 | grad_2F1(dF1, dF2, a + b, var(1.0), a + 1, z); | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/trigamma.hpp:63:31: note: in instantiation of function template specialization 'stan::math::operator+' requested here 63 | value = -trigamma_impl(-x + 1.0) + square(pi() / sin(-pi() * x)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/trigamma.hpp:23:44: note: in instantiation of function template specialization 'stan::math::trigamma_impl>' requested here 23 | inline var trigamma(const var& u) { return trigamma_impl(u); } | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/ub_constrain.hpp:77:13: note: in instantiation of function template specialization 'stan::math::operator-' requested here 77 | return ub - exp(x); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:107:12: note: in instantiation of function template specialization 'stan::math::ub_constrain, int, stan::math::var_value>' requested here 107 | return ub_constrain(x, ub, lp); | ^ ./stanExports_HBAM.h:549:34: note: in instantiation of function template specialization 'stan::math::lub_constrain, int, int, stan::math::var_value>' requested here 549 | sigma_beta = stan::math::lub_constrain(sigma_beta, 0, 2, lp__); | ^ ./stanExports_HBAM.h:1838:14: note: in instantiation of function template specialization 'model_HBAM_namespace::model_HBAM::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1838 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:115:24: note: in instantiation of function template specialization 'stan::math::operator-' requested here 115 | lp += log(ub - lb) - x - 2 * log1p(exp_minus_x); | ^ ./stanExports_HBAM.h:549:34: note: in instantiation of function template specialization 'stan::math::lub_constrain, int, int, stan::math::var_value>' requested here 549 | sigma_beta = stan::math::lub_constrain(sigma_beta, 0, 2, lp__); | ^ ./stanExports_HBAM.h:1838:14: note: in instantiation of function template specialization 'model_HBAM_namespace::model_HBAM::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1838 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_HBAM_namespace::model_HBAM::log_prob>' requested here 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:59: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:55: note: while substituting into a lambda expression here 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_HBAM.h:744:13: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 744 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_HBAM.h:1838:14: note: in instantiation of function template specialization 'model_HBAM_namespace::model_HBAM::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1838 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:60: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:56: note: while substituting into a lambda expression here 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_HBAM.h:744:13: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 744 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_HBAM.h:1838:14: note: in instantiation of function template specialization 'model_HBAM_namespace::model_HBAM::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1838 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:59: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: 'static' function 'set_zero_all_adjoints' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration] 14 | static void set_zero_all_adjoints() { | ^~~~~~~~~~~~~~~~~~~~~ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:110: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/generalized_inverse.hpp:34:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 34 | using value_t = value_type_t; | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:319: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/tail.hpp:46:9: warning: unused type alias 'idx_t' [-Wunused-local-typedef] 46 | using idx_t = index_type_t>; | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_lpmf.hpp:59:9: warning: unused type alias 'T_y_val' [-Wunused-local-typedef] 59 | using T_y_val = | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_lpdf.hpp:50:9: warning: unused type alias 'T_partials_matrix' [-Wunused-local-typedef] 50 | using T_partials_matrix = Eigen::Matrix; | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_lpdf.hpp:55:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 55 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:63: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_lpdf.hpp:45:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 45 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:74: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef] 60 | using T_partials_vec = typename Eigen::Matrix; | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:91: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_lpdf.hpp:44:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 44 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:111: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/frechet_cdf.hpp:30:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 30 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:245: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_lpmf.hpp:76:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 76 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:277: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_lpmf.hpp:62:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef] 62 | using T_alpha_val = typename std::conditional_t< | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:32: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:83:11: warning: unused type alias 'Block_' [-Wunused-local-typedef] 83 | using Block_ = Eigen::Block; | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:32:9: warning: unused type alias 'T_scalar' [-Wunused-local-typedef] 32 | using T_scalar = value_type_t; | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:64:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 64 | using value_t = value_type_t; | ^ In file included from stanExports_HBAM.cc:5: In file included from ./stanExports_HBAM.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:8: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/lvalue_varmat.hpp:349:9: warning: unused type alias 'pair_type' [-Wunused-local-typedef] 349 | using pair_type = std::pair; | ^ 69 warnings generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -c stanExports_HBAM_MAX.cc -o stanExports_HBAM_MAX.o In file included from stanExports_HBAM_MAX.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from stanExports_HBAM_MAX.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:48:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 48 | Rprintf("%.*s", n, s); | ~~^~ ~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:71:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 71 | REprintf("%.*s", n, s); | ~~^~ ~ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 239 | int count = 0; | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_cholesky_factor_corr.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_unit_vector.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/abs.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypot.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/apply_scalar_binary.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_matching_dims.hpp:33:8: warning: unused variable 'error' [-Wunused-variable] 33 | bool error = false; | ^~~~~ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:50: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/hmm_check.hpp:33:7: warning: unused variable 'n_transitions' [-Wunused-variable] 33 | int n_transitions = log_omegas.cols() - 1; | ^~~~~~~~~~~~~ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:118: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/gp_matern52_cov.hpp:275:10: warning: unused variable 'neg_root_5' [-Wunused-variable] 275 | double neg_root_5 = -root_5; | ^~~~~~~~~~ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:183: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/log_mix.hpp:86:13: warning: unused variable 'N' [-Wunused-variable] 86 | const int N = stan::math::size(theta); | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:87: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_cdf.hpp:82:10: warning: unused variable 'N' [-Wunused-variable] 82 | size_t N = max_size(y, mu, sigma); | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:128: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:98:7: warning: unused variable 'n' [-Wunused-variable] 98 | int n = G.rows(); // number of states | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:139: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/hmm_marginal.hpp:26:13: warning: unused variable 'n_states' [-Wunused-variable] 26 | const int n_states = omegas.rows(); | ^~~~~~~~ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:315: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/std_normal_rng.hpp:23:22: warning: unused variable 'function' [-Wunused-variable] 23 | static const char* function = "std_normal_rng"; | ^~~~~~~~ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:335: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:72:10: warning: unused variable 'ck' [-Wunused-variable] 72 | double ck = 50; | ^~ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 1252 | int ret = stan::services::error_codes::CONFIG; | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:610:13: warning: unused variable 'cols' [-Wunused-variable] 610 | const int cols = rvalue_index_size(idxs.tail_.head_, x_ref.cols()); | ^~~~ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:10: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:241:22: warning: unused variable 'x_cols' [-Wunused-variable] 241 | const Eigen::Index x_cols = x.cols(); | ^~~~~~ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:29: note: while substituting into a lambda expression here 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_minus_equal.hpp:24:16: note: in instantiation of function template specialization 'stan::math::operator-' requested here 24 | vi_ = (*this - b).vi_; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/complex_base.hpp:136:9: note: in instantiation of member function 'stan::math::var_value::operator-=' requested here 136 | re_ -= x; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:24:5: note: in instantiation of function template specialization 'stan::math::complex_base>::operator-=' requested here 24 | y -= rhs; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:55:20: note: in instantiation of function template specialization 'stan::math::internal::complex_subtract, int>' requested here 55 | return internal::complex_subtract(x, y); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/acosh.hpp:105:31: note: in instantiation of function template specialization 'stan::math::operator-, int>' requested here 105 | auto y = log(z + sqrt(z * z - 1)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/acosh.hpp:94:32: note: in instantiation of function template specialization 'stan::math::internal::complex_acosh>' requested here 94 | return stan::math::internal::complex_acosh(z); | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/grad_inc_beta.hpp:45:43: note: in instantiation of function template specialization 'stan::math::operator+' requested here 45 | grad_2F1(dF1, dF2, a + b, var(1.0), a + 1, z); | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/trigamma.hpp:63:31: note: in instantiation of function template specialization 'stan::math::operator+' requested here 63 | value = -trigamma_impl(-x + 1.0) + square(pi() / sin(-pi() * x)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/trigamma.hpp:23:44: note: in instantiation of function template specialization 'stan::math::trigamma_impl>' requested here 23 | inline var trigamma(const var& u) { return trigamma_impl(u); } | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/ub_constrain.hpp:77:13: note: in instantiation of function template specialization 'stan::math::operator-' requested here 77 | return ub - exp(x); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:107:12: note: in instantiation of function template specialization 'stan::math::ub_constrain, int, stan::math::var_value>' requested here 107 | return ub_constrain(x, ub, lp); | ^ ./stanExports_HBAM_MAX.h:573:34: note: in instantiation of function template specialization 'stan::math::lub_constrain, int, int, stan::math::var_value>' requested here 573 | sigma_beta = stan::math::lub_constrain(sigma_beta, 0, 2, lp__); | ^ ./stanExports_HBAM_MAX.h:2001:14: note: in instantiation of function template specialization 'model_HBAM_MAX_namespace::model_HBAM_MAX::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 2001 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_MAX.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:115:24: note: in instantiation of function template specialization 'stan::math::operator-' requested here 115 | lp += log(ub - lb) - x - 2 * log1p(exp_minus_x); | ^ ./stanExports_HBAM_MAX.h:573:34: note: in instantiation of function template specialization 'stan::math::lub_constrain, int, int, stan::math::var_value>' requested here 573 | sigma_beta = stan::math::lub_constrain(sigma_beta, 0, 2, lp__); | ^ ./stanExports_HBAM_MAX.h:2001:14: note: in instantiation of function template specialization 'model_HBAM_MAX_namespace::model_HBAM_MAX::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 2001 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_HBAM_MAX_namespace::model_HBAM_MAX::log_prob>' requested here 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_MAX.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:59: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:55: note: while substituting into a lambda expression here 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_HBAM_MAX.h:768:13: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 768 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_HBAM_MAX.h:2001:14: note: in instantiation of function template specialization 'model_HBAM_MAX_namespace::model_HBAM_MAX::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 2001 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_MAX.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:60: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:56: note: while substituting into a lambda expression here 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_HBAM_MAX.h:768:13: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 768 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_HBAM_MAX.h:2001:14: note: in instantiation of function template specialization 'model_HBAM_MAX_namespace::model_HBAM_MAX::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 2001 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_MAX.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:59: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: 'static' function 'set_zero_all_adjoints' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration] 14 | static void set_zero_all_adjoints() { | ^~~~~~~~~~~~~~~~~~~~~ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:110: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/generalized_inverse.hpp:34:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 34 | using value_t = value_type_t; | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:319: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/tail.hpp:46:9: warning: unused type alias 'idx_t' [-Wunused-local-typedef] 46 | using idx_t = index_type_t>; | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_lpmf.hpp:59:9: warning: unused type alias 'T_y_val' [-Wunused-local-typedef] 59 | using T_y_val = | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_lpdf.hpp:50:9: warning: unused type alias 'T_partials_matrix' [-Wunused-local-typedef] 50 | using T_partials_matrix = Eigen::Matrix; | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_lpdf.hpp:55:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 55 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:63: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_lpdf.hpp:45:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 45 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:74: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef] 60 | using T_partials_vec = typename Eigen::Matrix; | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:91: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_lpdf.hpp:44:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 44 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:111: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/frechet_cdf.hpp:30:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 30 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:245: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_lpmf.hpp:76:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 76 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:277: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_lpmf.hpp:62:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef] 62 | using T_alpha_val = typename std::conditional_t< | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:32: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:83:11: warning: unused type alias 'Block_' [-Wunused-local-typedef] 83 | using Block_ = Eigen::Block; | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:32:9: warning: unused type alias 'T_scalar' [-Wunused-local-typedef] 32 | using T_scalar = value_type_t; | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:64:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 64 | using value_t = value_type_t; | ^ In file included from stanExports_HBAM_MAX.cc:5: In file included from ./stanExports_HBAM_MAX.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:8: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/lvalue_varmat.hpp:349:9: warning: unused type alias 'pair_type' [-Wunused-local-typedef] 349 | using pair_type = std::pair; | ^ 69 warnings generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -c stanExports_HBAM_MINI.cc -o stanExports_HBAM_MINI.o In file included from stanExports_HBAM_MINI.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from stanExports_HBAM_MINI.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:48:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 48 | Rprintf("%.*s", n, s); | ~~^~ ~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:71:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 71 | REprintf("%.*s", n, s); | ~~^~ ~ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 239 | int count = 0; | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_cholesky_factor_corr.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_unit_vector.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/abs.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypot.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/apply_scalar_binary.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_matching_dims.hpp:33:8: warning: unused variable 'error' [-Wunused-variable] 33 | bool error = false; | ^~~~~ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:50: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/hmm_check.hpp:33:7: warning: unused variable 'n_transitions' [-Wunused-variable] 33 | int n_transitions = log_omegas.cols() - 1; | ^~~~~~~~~~~~~ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:118: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/gp_matern52_cov.hpp:275:10: warning: unused variable 'neg_root_5' [-Wunused-variable] 275 | double neg_root_5 = -root_5; | ^~~~~~~~~~ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:183: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/log_mix.hpp:86:13: warning: unused variable 'N' [-Wunused-variable] 86 | const int N = stan::math::size(theta); | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:87: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_cdf.hpp:82:10: warning: unused variable 'N' [-Wunused-variable] 82 | size_t N = max_size(y, mu, sigma); | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:128: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:98:7: warning: unused variable 'n' [-Wunused-variable] 98 | int n = G.rows(); // number of states | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:139: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/hmm_marginal.hpp:26:13: warning: unused variable 'n_states' [-Wunused-variable] 26 | const int n_states = omegas.rows(); | ^~~~~~~~ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:315: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/std_normal_rng.hpp:23:22: warning: unused variable 'function' [-Wunused-variable] 23 | static const char* function = "std_normal_rng"; | ^~~~~~~~ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:335: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:72:10: warning: unused variable 'ck' [-Wunused-variable] 72 | double ck = 50; | ^~ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 1252 | int ret = stan::services::error_codes::CONFIG; | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:610:13: warning: unused variable 'cols' [-Wunused-variable] 610 | const int cols = rvalue_index_size(idxs.tail_.head_, x_ref.cols()); | ^~~~ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:10: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:241:22: warning: unused variable 'x_cols' [-Wunused-variable] 241 | const Eigen::Index x_cols = x.cols(); | ^~~~~~ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:29: note: while substituting into a lambda expression here 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_minus_equal.hpp:24:16: note: in instantiation of function template specialization 'stan::math::operator-' requested here 24 | vi_ = (*this - b).vi_; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/complex_base.hpp:136:9: note: in instantiation of member function 'stan::math::var_value::operator-=' requested here 136 | re_ -= x; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:24:5: note: in instantiation of function template specialization 'stan::math::complex_base>::operator-=' requested here 24 | y -= rhs; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:55:20: note: in instantiation of function template specialization 'stan::math::internal::complex_subtract, int>' requested here 55 | return internal::complex_subtract(x, y); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/acosh.hpp:105:31: note: in instantiation of function template specialization 'stan::math::operator-, int>' requested here 105 | auto y = log(z + sqrt(z * z - 1)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/acosh.hpp:94:32: note: in instantiation of function template specialization 'stan::math::internal::complex_acosh>' requested here 94 | return stan::math::internal::complex_acosh(z); | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/grad_inc_beta.hpp:45:43: note: in instantiation of function template specialization 'stan::math::operator+' requested here 45 | grad_2F1(dF1, dF2, a + b, var(1.0), a + 1, z); | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/trigamma.hpp:63:31: note: in instantiation of function template specialization 'stan::math::operator+' requested here 63 | value = -trigamma_impl(-x + 1.0) + square(pi() / sin(-pi() * x)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/trigamma.hpp:23:44: note: in instantiation of function template specialization 'stan::math::trigamma_impl>' requested here 23 | inline var trigamma(const var& u) { return trigamma_impl(u); } | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/ub_constrain.hpp:77:13: note: in instantiation of function template specialization 'stan::math::operator-' requested here 77 | return ub - exp(x); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:107:12: note: in instantiation of function template specialization 'stan::math::ub_constrain, int, stan::math::var_value>' requested here 107 | return ub_constrain(x, ub, lp); | ^ ./stanExports_HBAM_MINI.h:533:34: note: in instantiation of function template specialization 'stan::math::lub_constrain, int, int, stan::math::var_value>' requested here 533 | sigma_beta = stan::math::lub_constrain(sigma_beta, 0, 2, lp__); | ^ ./stanExports_HBAM_MINI.h:1599:14: note: in instantiation of function template specialization 'model_HBAM_MINI_namespace::model_HBAM_MINI::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1599 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_MINI.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:115:24: note: in instantiation of function template specialization 'stan::math::operator-' requested here 115 | lp += log(ub - lb) - x - 2 * log1p(exp_minus_x); | ^ ./stanExports_HBAM_MINI.h:533:34: note: in instantiation of function template specialization 'stan::math::lub_constrain, int, int, stan::math::var_value>' requested here 533 | sigma_beta = stan::math::lub_constrain(sigma_beta, 0, 2, lp__); | ^ ./stanExports_HBAM_MINI.h:1599:14: note: in instantiation of function template specialization 'model_HBAM_MINI_namespace::model_HBAM_MINI::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1599 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_HBAM_MINI_namespace::model_HBAM_MINI::log_prob>' requested here 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_MINI.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:59: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:55: note: while substituting into a lambda expression here 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_HBAM_MINI.h:669:13: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 669 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_HBAM_MINI.h:1599:14: note: in instantiation of function template specialization 'model_HBAM_MINI_namespace::model_HBAM_MINI::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1599 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_MINI.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:60: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:56: note: while substituting into a lambda expression here 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_HBAM_MINI.h:669:13: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 669 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_HBAM_MINI.h:1599:14: note: in instantiation of function template specialization 'model_HBAM_MINI_namespace::model_HBAM_MINI::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1599 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_MINI.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:59: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: 'static' function 'set_zero_all_adjoints' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration] 14 | static void set_zero_all_adjoints() { | ^~~~~~~~~~~~~~~~~~~~~ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:110: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/generalized_inverse.hpp:34:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 34 | using value_t = value_type_t; | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:319: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/tail.hpp:46:9: warning: unused type alias 'idx_t' [-Wunused-local-typedef] 46 | using idx_t = index_type_t>; | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_lpmf.hpp:59:9: warning: unused type alias 'T_y_val' [-Wunused-local-typedef] 59 | using T_y_val = | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_lpdf.hpp:50:9: warning: unused type alias 'T_partials_matrix' [-Wunused-local-typedef] 50 | using T_partials_matrix = Eigen::Matrix; | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_lpdf.hpp:55:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 55 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:63: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_lpdf.hpp:45:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 45 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:74: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef] 60 | using T_partials_vec = typename Eigen::Matrix; | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:91: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_lpdf.hpp:44:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 44 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:111: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/frechet_cdf.hpp:30:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 30 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:245: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_lpmf.hpp:76:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 76 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:277: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_lpmf.hpp:62:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef] 62 | using T_alpha_val = typename std::conditional_t< | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:32: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:83:11: warning: unused type alias 'Block_' [-Wunused-local-typedef] 83 | using Block_ = Eigen::Block; | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:32:9: warning: unused type alias 'T_scalar' [-Wunused-local-typedef] 32 | using T_scalar = value_type_t; | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:64:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 64 | using value_t = value_type_t; | ^ In file included from stanExports_HBAM_MINI.cc:5: In file included from ./stanExports_HBAM_MINI.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:8: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/lvalue_varmat.hpp:349:9: warning: unused type alias 'pair_type' [-Wunused-local-typedef] 349 | using pair_type = std::pair; | ^ 69 warnings generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -c stanExports_HBAM_MULTI.cc -o stanExports_HBAM_MULTI.o In file included from stanExports_HBAM_MULTI.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from stanExports_HBAM_MULTI.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:48:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 48 | Rprintf("%.*s", n, s); | ~~^~ ~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:71:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 71 | REprintf("%.*s", n, s); | ~~^~ ~ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 239 | int count = 0; | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_cholesky_factor_corr.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_unit_vector.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/abs.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypot.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/apply_scalar_binary.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_matching_dims.hpp:33:8: warning: unused variable 'error' [-Wunused-variable] 33 | bool error = false; | ^~~~~ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:50: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/hmm_check.hpp:33:7: warning: unused variable 'n_transitions' [-Wunused-variable] 33 | int n_transitions = log_omegas.cols() - 1; | ^~~~~~~~~~~~~ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:118: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/gp_matern52_cov.hpp:275:10: warning: unused variable 'neg_root_5' [-Wunused-variable] 275 | double neg_root_5 = -root_5; | ^~~~~~~~~~ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:183: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/log_mix.hpp:86:13: warning: unused variable 'N' [-Wunused-variable] 86 | const int N = stan::math::size(theta); | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:87: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_cdf.hpp:82:10: warning: unused variable 'N' [-Wunused-variable] 82 | size_t N = max_size(y, mu, sigma); | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:128: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:98:7: warning: unused variable 'n' [-Wunused-variable] 98 | int n = G.rows(); // number of states | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:139: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/hmm_marginal.hpp:26:13: warning: unused variable 'n_states' [-Wunused-variable] 26 | const int n_states = omegas.rows(); | ^~~~~~~~ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:315: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/std_normal_rng.hpp:23:22: warning: unused variable 'function' [-Wunused-variable] 23 | static const char* function = "std_normal_rng"; | ^~~~~~~~ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:335: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:72:10: warning: unused variable 'ck' [-Wunused-variable] 72 | double ck = 50; | ^~ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 1252 | int ret = stan::services::error_codes::CONFIG; | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:610:13: warning: unused variable 'cols' [-Wunused-variable] 610 | const int cols = rvalue_index_size(idxs.tail_.head_, x_ref.cols()); | ^~~~ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:10: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:241:22: warning: unused variable 'x_cols' [-Wunused-variable] 241 | const Eigen::Index x_cols = x.cols(); | ^~~~~~ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:29: note: while substituting into a lambda expression here 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_minus_equal.hpp:24:16: note: in instantiation of function template specialization 'stan::math::operator-' requested here 24 | vi_ = (*this - b).vi_; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/complex_base.hpp:136:9: note: in instantiation of member function 'stan::math::var_value::operator-=' requested here 136 | re_ -= x; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:24:5: note: in instantiation of function template specialization 'stan::math::complex_base>::operator-=' requested here 24 | y -= rhs; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:55:20: note: in instantiation of function template specialization 'stan::math::internal::complex_subtract, int>' requested here 55 | return internal::complex_subtract(x, y); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/acosh.hpp:105:31: note: in instantiation of function template specialization 'stan::math::operator-, int>' requested here 105 | auto y = log(z + sqrt(z * z - 1)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/acosh.hpp:94:32: note: in instantiation of function template specialization 'stan::math::internal::complex_acosh>' requested here 94 | return stan::math::internal::complex_acosh(z); | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/grad_inc_beta.hpp:45:43: note: in instantiation of function template specialization 'stan::math::operator+' requested here 45 | grad_2F1(dF1, dF2, a + b, var(1.0), a + 1, z); | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/trigamma.hpp:63:31: note: in instantiation of function template specialization 'stan::math::operator+' requested here 63 | value = -trigamma_impl(-x + 1.0) + square(pi() / sin(-pi() * x)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/trigamma.hpp:23:44: note: in instantiation of function template specialization 'stan::math::trigamma_impl>' requested here 23 | inline var trigamma(const var& u) { return trigamma_impl(u); } | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/ub_constrain.hpp:77:13: note: in instantiation of function template specialization 'stan::math::operator-' requested here 77 | return ub - exp(x); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:107:12: note: in instantiation of function template specialization 'stan::math::ub_constrain, int, stan::math::var_value>' requested here 107 | return ub_constrain(x, ub, lp); | ^ ./stanExports_HBAM_MULTI.h:686:34: note: in instantiation of function template specialization 'stan::math::lub_constrain, int, int, stan::math::var_value>' requested here 686 | sigma_beta = stan::math::lub_constrain(sigma_beta, 0, 2, lp__); | ^ ./stanExports_HBAM_MULTI.h:2159:14: note: in instantiation of function template specialization 'model_HBAM_MULTI_namespace::model_HBAM_MULTI::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 2159 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_MULTI.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:115:24: note: in instantiation of function template specialization 'stan::math::operator-' requested here 115 | lp += log(ub - lb) - x - 2 * log1p(exp_minus_x); | ^ ./stanExports_HBAM_MULTI.h:686:34: note: in instantiation of function template specialization 'stan::math::lub_constrain, int, int, stan::math::var_value>' requested here 686 | sigma_beta = stan::math::lub_constrain(sigma_beta, 0, 2, lp__); | ^ ./stanExports_HBAM_MULTI.h:2159:14: note: in instantiation of function template specialization 'model_HBAM_MULTI_namespace::model_HBAM_MULTI::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 2159 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_HBAM_MULTI_namespace::model_HBAM_MULTI::log_prob>' requested here 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_MULTI.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:59: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:55: note: while substituting into a lambda expression here 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_HBAM_MULTI.h:899:13: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 899 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_HBAM_MULTI.h:2159:14: note: in instantiation of function template specialization 'model_HBAM_MULTI_namespace::model_HBAM_MULTI::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 2159 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_MULTI.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:60: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:56: note: while substituting into a lambda expression here 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_HBAM_MULTI.h:899:13: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 899 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_HBAM_MULTI.h:2159:14: note: in instantiation of function template specialization 'model_HBAM_MULTI_namespace::model_HBAM_MULTI::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 2159 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_MULTI.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:59: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: 'static' function 'set_zero_all_adjoints' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration] 14 | static void set_zero_all_adjoints() { | ^~~~~~~~~~~~~~~~~~~~~ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:110: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/generalized_inverse.hpp:34:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 34 | using value_t = value_type_t; | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:319: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/tail.hpp:46:9: warning: unused type alias 'idx_t' [-Wunused-local-typedef] 46 | using idx_t = index_type_t>; | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_lpmf.hpp:59:9: warning: unused type alias 'T_y_val' [-Wunused-local-typedef] 59 | using T_y_val = | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_lpdf.hpp:50:9: warning: unused type alias 'T_partials_matrix' [-Wunused-local-typedef] 50 | using T_partials_matrix = Eigen::Matrix; | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_lpdf.hpp:55:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 55 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:63: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_lpdf.hpp:45:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 45 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:74: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef] 60 | using T_partials_vec = typename Eigen::Matrix; | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:91: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_lpdf.hpp:44:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 44 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:111: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/frechet_cdf.hpp:30:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 30 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:245: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_lpmf.hpp:76:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 76 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:277: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_lpmf.hpp:62:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef] 62 | using T_alpha_val = typename std::conditional_t< | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:32: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:83:11: warning: unused type alias 'Block_' [-Wunused-local-typedef] 83 | using Block_ = Eigen::Block; | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:32:9: warning: unused type alias 'T_scalar' [-Wunused-local-typedef] 32 | using T_scalar = value_type_t; | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:64:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 64 | using value_t = value_type_t; | ^ In file included from stanExports_HBAM_MULTI.cc:5: In file included from ./stanExports_HBAM_MULTI.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:8: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/lvalue_varmat.hpp:349:9: warning: unused type alias 'pair_type' [-Wunused-local-typedef] 349 | using pair_type = std::pair; | ^ 69 warnings generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -c stanExports_HBAM_MULTI_NF.cc -o stanExports_HBAM_MULTI_NF.o In file included from stanExports_HBAM_MULTI_NF.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from stanExports_HBAM_MULTI_NF.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:48:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 48 | Rprintf("%.*s", n, s); | ~~^~ ~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:71:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 71 | REprintf("%.*s", n, s); | ~~^~ ~ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 239 | int count = 0; | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_cholesky_factor_corr.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_unit_vector.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/abs.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypot.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/apply_scalar_binary.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_matching_dims.hpp:33:8: warning: unused variable 'error' [-Wunused-variable] 33 | bool error = false; | ^~~~~ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:50: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/hmm_check.hpp:33:7: warning: unused variable 'n_transitions' [-Wunused-variable] 33 | int n_transitions = log_omegas.cols() - 1; | ^~~~~~~~~~~~~ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:118: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/gp_matern52_cov.hpp:275:10: warning: unused variable 'neg_root_5' [-Wunused-variable] 275 | double neg_root_5 = -root_5; | ^~~~~~~~~~ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:183: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/log_mix.hpp:86:13: warning: unused variable 'N' [-Wunused-variable] 86 | const int N = stan::math::size(theta); | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:87: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_cdf.hpp:82:10: warning: unused variable 'N' [-Wunused-variable] 82 | size_t N = max_size(y, mu, sigma); | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:128: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:98:7: warning: unused variable 'n' [-Wunused-variable] 98 | int n = G.rows(); // number of states | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:139: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/hmm_marginal.hpp:26:13: warning: unused variable 'n_states' [-Wunused-variable] 26 | const int n_states = omegas.rows(); | ^~~~~~~~ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:315: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/std_normal_rng.hpp:23:22: warning: unused variable 'function' [-Wunused-variable] 23 | static const char* function = "std_normal_rng"; | ^~~~~~~~ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:335: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:72:10: warning: unused variable 'ck' [-Wunused-variable] 72 | double ck = 50; | ^~ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 1252 | int ret = stan::services::error_codes::CONFIG; | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:610:13: warning: unused variable 'cols' [-Wunused-variable] 610 | const int cols = rvalue_index_size(idxs.tail_.head_, x_ref.cols()); | ^~~~ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:10: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:241:22: warning: unused variable 'x_cols' [-Wunused-variable] 241 | const Eigen::Index x_cols = x.cols(); | ^~~~~~ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:29: note: while substituting into a lambda expression here 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_minus_equal.hpp:24:16: note: in instantiation of function template specialization 'stan::math::operator-' requested here 24 | vi_ = (*this - b).vi_; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/complex_base.hpp:136:9: note: in instantiation of member function 'stan::math::var_value::operator-=' requested here 136 | re_ -= x; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:24:5: note: in instantiation of function template specialization 'stan::math::complex_base>::operator-=' requested here 24 | y -= rhs; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:55:20: note: in instantiation of function template specialization 'stan::math::internal::complex_subtract, int>' requested here 55 | return internal::complex_subtract(x, y); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/acosh.hpp:105:31: note: in instantiation of function template specialization 'stan::math::operator-, int>' requested here 105 | auto y = log(z + sqrt(z * z - 1)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/acosh.hpp:94:32: note: in instantiation of function template specialization 'stan::math::internal::complex_acosh>' requested here 94 | return stan::math::internal::complex_acosh(z); | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/grad_inc_beta.hpp:45:43: note: in instantiation of function template specialization 'stan::math::operator+' requested here 45 | grad_2F1(dF1, dF2, a + b, var(1.0), a + 1, z); | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/trigamma.hpp:63:31: note: in instantiation of function template specialization 'stan::math::operator+' requested here 63 | value = -trigamma_impl(-x + 1.0) + square(pi() / sin(-pi() * x)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/trigamma.hpp:23:44: note: in instantiation of function template specialization 'stan::math::trigamma_impl>' requested here 23 | inline var trigamma(const var& u) { return trigamma_impl(u); } | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/ub_constrain.hpp:77:13: note: in instantiation of function template specialization 'stan::math::operator-' requested here 77 | return ub - exp(x); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:107:12: note: in instantiation of function template specialization 'stan::math::ub_constrain, int, stan::math::var_value>' requested here 107 | return ub_constrain(x, ub, lp); | ^ ./stanExports_HBAM_MULTI_NF.h:652:34: note: in instantiation of function template specialization 'stan::math::lub_constrain, int, int, stan::math::var_value>' requested here 652 | sigma_beta = stan::math::lub_constrain(sigma_beta, 0, 2, lp__); | ^ ./stanExports_HBAM_MULTI_NF.h:1652:14: note: in instantiation of function template specialization 'model_HBAM_MULTI_NF_namespace::model_HBAM_MULTI_NF::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1652 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_MULTI_NF.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:115:24: note: in instantiation of function template specialization 'stan::math::operator-' requested here 115 | lp += log(ub - lb) - x - 2 * log1p(exp_minus_x); | ^ ./stanExports_HBAM_MULTI_NF.h:652:34: note: in instantiation of function template specialization 'stan::math::lub_constrain, int, int, stan::math::var_value>' requested here 652 | sigma_beta = stan::math::lub_constrain(sigma_beta, 0, 2, lp__); | ^ ./stanExports_HBAM_MULTI_NF.h:1652:14: note: in instantiation of function template specialization 'model_HBAM_MULTI_NF_namespace::model_HBAM_MULTI_NF::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1652 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_HBAM_MULTI_NF_namespace::model_HBAM_MULTI_NF::log_prob>' requested here 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_MULTI_NF.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:59: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:55: note: while substituting into a lambda expression here 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_HBAM_MULTI_NF.h:792:11: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 792 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_HBAM_MULTI_NF.h:1652:14: note: in instantiation of function template specialization 'model_HBAM_MULTI_NF_namespace::model_HBAM_MULTI_NF::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1652 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_MULTI_NF.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:60: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:56: note: while substituting into a lambda expression here 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_HBAM_MULTI_NF.h:792:11: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 792 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_HBAM_MULTI_NF.h:1652:14: note: in instantiation of function template specialization 'model_HBAM_MULTI_NF_namespace::model_HBAM_MULTI_NF::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1652 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_MULTI_NF.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:59: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: 'static' function 'set_zero_all_adjoints' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration] 14 | static void set_zero_all_adjoints() { | ^~~~~~~~~~~~~~~~~~~~~ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:110: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/generalized_inverse.hpp:34:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 34 | using value_t = value_type_t; | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:319: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/tail.hpp:46:9: warning: unused type alias 'idx_t' [-Wunused-local-typedef] 46 | using idx_t = index_type_t>; | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_lpmf.hpp:59:9: warning: unused type alias 'T_y_val' [-Wunused-local-typedef] 59 | using T_y_val = | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_lpdf.hpp:50:9: warning: unused type alias 'T_partials_matrix' [-Wunused-local-typedef] 50 | using T_partials_matrix = Eigen::Matrix; | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_lpdf.hpp:55:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 55 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:63: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_lpdf.hpp:45:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 45 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:74: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef] 60 | using T_partials_vec = typename Eigen::Matrix; | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:91: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_lpdf.hpp:44:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 44 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:111: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/frechet_cdf.hpp:30:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 30 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:245: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_lpmf.hpp:76:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 76 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:277: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_lpmf.hpp:62:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef] 62 | using T_alpha_val = typename std::conditional_t< | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:32: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:83:11: warning: unused type alias 'Block_' [-Wunused-local-typedef] 83 | using Block_ = Eigen::Block; | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:32:9: warning: unused type alias 'T_scalar' [-Wunused-local-typedef] 32 | using T_scalar = value_type_t; | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:64:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 64 | using value_t = value_type_t; | ^ In file included from stanExports_HBAM_MULTI_NF.cc:5: In file included from ./stanExports_HBAM_MULTI_NF.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:8: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/lvalue_varmat.hpp:349:9: warning: unused type alias 'pair_type' [-Wunused-local-typedef] 349 | using pair_type = std::pair; | ^ 69 warnings generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -c stanExports_HBAM_NF.cc -o stanExports_HBAM_NF.o In file included from stanExports_HBAM_NF.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from stanExports_HBAM_NF.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:48:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 48 | Rprintf("%.*s", n, s); | ~~^~ ~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:71:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 71 | REprintf("%.*s", n, s); | ~~^~ ~ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 239 | int count = 0; | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_cholesky_factor_corr.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_unit_vector.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/abs.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypot.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/apply_scalar_binary.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_matching_dims.hpp:33:8: warning: unused variable 'error' [-Wunused-variable] 33 | bool error = false; | ^~~~~ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:50: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/hmm_check.hpp:33:7: warning: unused variable 'n_transitions' [-Wunused-variable] 33 | int n_transitions = log_omegas.cols() - 1; | ^~~~~~~~~~~~~ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:118: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/gp_matern52_cov.hpp:275:10: warning: unused variable 'neg_root_5' [-Wunused-variable] 275 | double neg_root_5 = -root_5; | ^~~~~~~~~~ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:183: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/log_mix.hpp:86:13: warning: unused variable 'N' [-Wunused-variable] 86 | const int N = stan::math::size(theta); | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:87: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_cdf.hpp:82:10: warning: unused variable 'N' [-Wunused-variable] 82 | size_t N = max_size(y, mu, sigma); | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:128: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:98:7: warning: unused variable 'n' [-Wunused-variable] 98 | int n = G.rows(); // number of states | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:139: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/hmm_marginal.hpp:26:13: warning: unused variable 'n_states' [-Wunused-variable] 26 | const int n_states = omegas.rows(); | ^~~~~~~~ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:315: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/std_normal_rng.hpp:23:22: warning: unused variable 'function' [-Wunused-variable] 23 | static const char* function = "std_normal_rng"; | ^~~~~~~~ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:335: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:72:10: warning: unused variable 'ck' [-Wunused-variable] 72 | double ck = 50; | ^~ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 1252 | int ret = stan::services::error_codes::CONFIG; | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:610:13: warning: unused variable 'cols' [-Wunused-variable] 610 | const int cols = rvalue_index_size(idxs.tail_.head_, x_ref.cols()); | ^~~~ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:10: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:241:22: warning: unused variable 'x_cols' [-Wunused-variable] 241 | const Eigen::Index x_cols = x.cols(); | ^~~~~~ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:29: note: while substituting into a lambda expression here 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_minus_equal.hpp:24:16: note: in instantiation of function template specialization 'stan::math::operator-' requested here 24 | vi_ = (*this - b).vi_; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/complex_base.hpp:136:9: note: in instantiation of member function 'stan::math::var_value::operator-=' requested here 136 | re_ -= x; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:24:5: note: in instantiation of function template specialization 'stan::math::complex_base>::operator-=' requested here 24 | y -= rhs; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:55:20: note: in instantiation of function template specialization 'stan::math::internal::complex_subtract, int>' requested here 55 | return internal::complex_subtract(x, y); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/acosh.hpp:105:31: note: in instantiation of function template specialization 'stan::math::operator-, int>' requested here 105 | auto y = log(z + sqrt(z * z - 1)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/acosh.hpp:94:32: note: in instantiation of function template specialization 'stan::math::internal::complex_acosh>' requested here 94 | return stan::math::internal::complex_acosh(z); | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/grad_inc_beta.hpp:45:43: note: in instantiation of function template specialization 'stan::math::operator+' requested here 45 | grad_2F1(dF1, dF2, a + b, var(1.0), a + 1, z); | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/trigamma.hpp:63:31: note: in instantiation of function template specialization 'stan::math::operator+' requested here 63 | value = -trigamma_impl(-x + 1.0) + square(pi() / sin(-pi() * x)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/trigamma.hpp:23:44: note: in instantiation of function template specialization 'stan::math::trigamma_impl>' requested here 23 | inline var trigamma(const var& u) { return trigamma_impl(u); } | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/ub_constrain.hpp:77:13: note: in instantiation of function template specialization 'stan::math::operator-' requested here 77 | return ub - exp(x); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:107:12: note: in instantiation of function template specialization 'stan::math::ub_constrain, int, stan::math::var_value>' requested here 107 | return ub_constrain(x, ub, lp); | ^ ./stanExports_HBAM_NF.h:515:34: note: in instantiation of function template specialization 'stan::math::lub_constrain, int, int, stan::math::var_value>' requested here 515 | sigma_beta = stan::math::lub_constrain(sigma_beta, 0, 2, lp__); | ^ ./stanExports_HBAM_NF.h:1323:14: note: in instantiation of function template specialization 'model_HBAM_NF_namespace::model_HBAM_NF::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1323 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_NF.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:115:24: note: in instantiation of function template specialization 'stan::math::operator-' requested here 115 | lp += log(ub - lb) - x - 2 * log1p(exp_minus_x); | ^ ./stanExports_HBAM_NF.h:515:34: note: in instantiation of function template specialization 'stan::math::lub_constrain, int, int, stan::math::var_value>' requested here 515 | sigma_beta = stan::math::lub_constrain(sigma_beta, 0, 2, lp__); | ^ ./stanExports_HBAM_NF.h:1323:14: note: in instantiation of function template specialization 'model_HBAM_NF_namespace::model_HBAM_NF::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1323 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_HBAM_NF_namespace::model_HBAM_NF::log_prob>' requested here 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_NF.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:59: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:55: note: while substituting into a lambda expression here 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_HBAM_NF.h:633:11: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 633 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_HBAM_NF.h:1323:14: note: in instantiation of function template specialization 'model_HBAM_NF_namespace::model_HBAM_NF::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1323 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_NF.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:60: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:56: note: while substituting into a lambda expression here 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_HBAM_NF.h:633:11: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 633 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_HBAM_NF.h:1323:14: note: in instantiation of function template specialization 'model_HBAM_NF_namespace::model_HBAM_NF::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 1323 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_NF.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:59: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: 'static' function 'set_zero_all_adjoints' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration] 14 | static void set_zero_all_adjoints() { | ^~~~~~~~~~~~~~~~~~~~~ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:110: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/generalized_inverse.hpp:34:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 34 | using value_t = value_type_t; | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:319: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/tail.hpp:46:9: warning: unused type alias 'idx_t' [-Wunused-local-typedef] 46 | using idx_t = index_type_t>; | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_lpmf.hpp:59:9: warning: unused type alias 'T_y_val' [-Wunused-local-typedef] 59 | using T_y_val = | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_lpdf.hpp:50:9: warning: unused type alias 'T_partials_matrix' [-Wunused-local-typedef] 50 | using T_partials_matrix = Eigen::Matrix; | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_lpdf.hpp:55:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 55 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:63: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_lpdf.hpp:45:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 45 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:74: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef] 60 | using T_partials_vec = typename Eigen::Matrix; | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:91: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_lpdf.hpp:44:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 44 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:111: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/frechet_cdf.hpp:30:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 30 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:245: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_lpmf.hpp:76:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 76 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:277: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_lpmf.hpp:62:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef] 62 | using T_alpha_val = typename std::conditional_t< | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:32: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:83:11: warning: unused type alias 'Block_' [-Wunused-local-typedef] 83 | using Block_ = Eigen::Block; | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:32:9: warning: unused type alias 'T_scalar' [-Wunused-local-typedef] 32 | using T_scalar = value_type_t; | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:64:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 64 | using value_t = value_type_t; | ^ In file included from stanExports_HBAM_NF.cc:5: In file included from ./stanExports_HBAM_NF.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:8: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/lvalue_varmat.hpp:349:9: warning: unused type alias 'pair_type' [-Wunused-local-typedef] 349 | using pair_type = std::pair; | ^ 69 warnings generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -c stanExports_HBAM_R_MINI.cc -o stanExports_HBAM_R_MINI.o In file included from stanExports_HBAM_R_MINI.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from stanExports_HBAM_R_MINI.cc:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:48:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 48 | Rprintf("%.*s", n, s); | ~~^~ ~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:71:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 71 | REprintf("%.*s", n, s); | ~~^~ ~ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 239 | int count = 0; | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_cholesky_factor_corr.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_unit_vector.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/abs.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypot.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/apply_scalar_binary.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_matching_dims.hpp:33:8: warning: unused variable 'error' [-Wunused-variable] 33 | bool error = false; | ^~~~~ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:12: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:50: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/hmm_check.hpp:33:7: warning: unused variable 'n_transitions' [-Wunused-variable] 33 | int n_transitions = log_omegas.cols() - 1; | ^~~~~~~~~~~~~ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:118: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/gp_matern52_cov.hpp:275:10: warning: unused variable 'neg_root_5' [-Wunused-variable] 275 | double neg_root_5 = -root_5; | ^~~~~~~~~~ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:183: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/log_mix.hpp:86:13: warning: unused variable 'N' [-Wunused-variable] 86 | const int N = stan::math::size(theta); | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 197 | | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:87: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_cdf.hpp:82:10: warning: unused variable 'N' [-Wunused-variable] 82 | size_t N = max_size(y, mu, sigma); | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:128: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:98:7: warning: unused variable 'n' [-Wunused-variable] 98 | int n = G.rows(); // number of states | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:139: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/hmm_marginal.hpp:26:13: warning: unused variable 'n_states' [-Wunused-variable] 26 | const int n_states = omegas.rows(); | ^~~~~~~~ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:315: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/std_normal_rng.hpp:23:22: warning: unused variable 'function' [-Wunused-variable] 23 | static const char* function = "std_normal_rng"; | ^~~~~~~~ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:335: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:72:10: warning: unused variable 'ck' [-Wunused-variable] 72 | double ck = 50; | ^~ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 1252 | int ret = stan::services::error_codes::CONFIG; | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:9: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:610:13: warning: unused variable 'cols' [-Wunused-variable] 610 | const int cols = rvalue_index_size(idxs.tail_.head_, x_ref.cols()); | ^~~~ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:10: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:241:22: warning: unused variable 'x_cols' [-Wunused-variable] 241 | const Eigen::Index x_cols = x.cols(); | ^~~~~~ In file included from stanExports_HBAM_R_MINI.cc:5: ./stanExports_HBAM_R_MINI.h:231:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable] 231 | int pos__; | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:29: note: while substituting into a lambda expression here 88 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_minus_equal.hpp:24:16: note: in instantiation of function template specialization 'stan::math::operator-' requested here 24 | vi_ = (*this - b).vi_; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/complex_base.hpp:136:9: note: in instantiation of member function 'stan::math::var_value::operator-=' requested here 136 | re_ -= x; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:24:5: note: in instantiation of function template specialization 'stan::math::complex_base>::operator-=' requested here 24 | y -= rhs; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:55:20: note: in instantiation of function template specialization 'stan::math::internal::complex_subtract, int>' requested here 55 | return internal::complex_subtract(x, y); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/acosh.hpp:105:31: note: in instantiation of function template specialization 'stan::math::operator-, int>' requested here 105 | auto y = log(z + sqrt(z * z - 1)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/acosh.hpp:94:32: note: in instantiation of function template specialization 'stan::math::internal::complex_acosh>' requested here 94 | return stan::math::internal::complex_acosh(z); | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/grad_inc_beta.hpp:45:43: note: in instantiation of function template specialization 'stan::math::operator+' requested here 45 | grad_2F1(dF1, dF2, a + b, var(1.0), a + 1, z); | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:28: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here 84 | [avi = a.vi_, b](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/trigamma.hpp:63:31: note: in instantiation of function template specialization 'stan::math::operator+' requested here 63 | value = -trigamma_impl(-x + 1.0) + square(pi() / sin(-pi() * x)); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/trigamma.hpp:23:44: note: in instantiation of function template specialization 'stan::math::trigamma_impl>' requested here 23 | inline var trigamma(const var& u) { return trigamma_impl(u); } | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:115:24: note: in instantiation of function template specialization 'stan::math::operator-' requested here 115 | lp += log(ub - lb) - x - 2 * log1p(exp_minus_x); | ^ ./stanExports_HBAM_R_MINI.h:638:34: note: in instantiation of function template specialization 'stan::math::lub_constrain, int, int, stan::math::var_value>' requested here 638 | sigma_beta = stan::math::lub_constrain(sigma_beta, 0, 2, lp__); | ^ ./stanExports_HBAM_R_MINI.h:2040:14: note: in instantiation of function template specialization 'model_HBAM_R_MINI_namespace::model_HBAM_R_MINI::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 2040 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_HBAM_R_MINI_namespace::model_HBAM_R_MINI::log_prob>' requested here 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_R_MINI.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here 113 | [bvi = b.vi_, a](const auto& vi) mutable { | ^ ./stanExports_HBAM_R_MINI.h:870:20: note: in instantiation of function template specialization 'stan::math::operator-' requested here 870 | (((1 - gamma[(ii[(n - 1)] - 1)]) * mu0[(1 - 1)]) + | ^ ./stanExports_HBAM_R_MINI.h:2040:14: note: in instantiation of function template specialization 'model_HBAM_R_MINI_namespace::model_HBAM_R_MINI::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 2040 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_HBAM_R_MINI_namespace::model_HBAM_R_MINI::log_prob>' requested here 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_R_MINI.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:59: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:55: note: while substituting into a lambda expression here 83 | container_operands_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_HBAM_R_MINI.h:869:13: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 869 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_HBAM_R_MINI.h:2040:14: note: in instantiation of function template specialization 'model_HBAM_R_MINI_namespace::model_HBAM_R_MINI::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 2040 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_R_MINI.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:52: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:60: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:56: note: while substituting into a lambda expression here 86 | container_gradients_(index_apply([&, this](auto... Is) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here 167 | return new precomputed_gradients_vari_template< | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials &, const stan::math::var_value &>::build' requested here 113 | return ops_partials.build(logp); | ^ ./stanExports_HBAM_R_MINI.h:869:13: note: in instantiation of function template specialization 'stan::math::normal_lpdf, stan::math::var_value, nullptr>' requested here 869 | normal_lpdf(Y[(n - 1)], | ^ ./stanExports_HBAM_R_MINI.h:2040:14: note: in instantiation of function template specialization 'model_HBAM_R_MINI_namespace::model_HBAM_R_MINI::log_prob_impl>, std::vector, nullptr, nullptr>' requested here 2040 | return log_prob_impl(params_r, params_i, pstream); | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 40 | var adLogProb = model.template log_prob( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here 166 | log_prob = stan::model::log_prob_grad( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here 49 | std::vector cont_vector = util::initialize( | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here 481 | return_code = stan::services::diagnose::diagnose(model, | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here 1215 | ret = command(args, model_, holder, names_oi_tidx_, | ^ stanExports_HBAM_R_MINI.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here 15 | .method("call_sampler", &rstan::stan_fit ::call_sampler) | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:48: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:59: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: 'static' function 'set_zero_all_adjoints' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration] 14 | static void set_zero_all_adjoints() { | ^~~~~~~~~~~~~~~~~~~~~ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:110: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/generalized_inverse.hpp:34:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 34 | using value_t = value_type_t; | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:319: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/tail.hpp:46:9: warning: unused type alias 'idx_t' [-Wunused-local-typedef] 46 | using idx_t = index_type_t>; | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_lpmf.hpp:59:9: warning: unused type alias 'T_y_val' [-Wunused-local-typedef] 59 | using T_y_val = | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_lpdf.hpp:50:9: warning: unused type alias 'T_partials_matrix' [-Wunused-local-typedef] 50 | using T_partials_matrix = Eigen::Matrix; | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:37: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/beta_proportion_lpdf.hpp:55:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 55 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:63: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/cauchy_lpdf.hpp:45:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 45 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:74: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef] 60 | using T_partials_vec = typename Eigen::Matrix; | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:91: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/double_exponential_lpdf.hpp:44:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 44 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:111: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/frechet_cdf.hpp:30:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 30 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:245: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/ordered_logistic_lpmf.hpp:76:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] 76 | using T_partials_array = Eigen::Array; | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:277: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_log.hpp:5: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_lpmf.hpp:62:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef] 62 | using T_alpha_val = typename std::conditional_t< | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:32: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:83:11: warning: unused type alias 'Block_' [-Wunused-local-typedef] 83 | using Block_ = Eigen::Block; | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:34: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:32:9: warning: unused type alias 'T_scalar' [-Wunused-local-typedef] 32 | using T_scalar = value_type_t; | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:49: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:71: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:64:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] 64 | using value_t = value_type_t; | ^ In file included from stanExports_HBAM_R_MINI.cc:5: In file included from ./stanExports_HBAM_R_MINI.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:8: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/lvalue_varmat.hpp:349:9: warning: unused type alias 'pair_type' [-Wunused-local-typedef] 349 | using pair_type = std::pair; | ^ 70 warnings generated. clang++-17 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o hbamr.so RcppExports.o stanExports_BAM.o stanExports_FBAM_MINI.o stanExports_FBAM_MULTI.o stanExports_FBAM_MULTI_NF.o stanExports_HBAM.o stanExports_HBAM_MAX.o stanExports_HBAM_MINI.o stanExports_HBAM_MULTI.o stanExports_HBAM_MULTI_NF.o stanExports_HBAM_NF.o stanExports_HBAM_R_MINI.o -L/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/lib/ -Wl,-rpath,/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/lib/ -ltbb -ltbbmalloc -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /srv/hornik/tmp/CRAN/hbamr.Rcheck/00LOCK-hbamr/00new/hbamr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hbamr)