downloading reverse dependencies ‘APackOfTheClones’, ‘EMJMCMC’, ‘epos’, ‘FastUtils’, ‘GPTreeO’, ‘GWASinspector’, ‘hset’, ‘janus’, ‘neuroim’, ‘noah’, ‘pkgndep’, ‘popsom7’, ‘rankdist’, ‘ReinforcementLearning’, ‘rFSA’, ‘sBIC’, ‘sklarsomega’, ‘tictactoe’, ‘TrueSkillThroughTime’, ‘TSDT’, ‘uotm’, ‘VecDep’, ‘gips’, ‘r2r’ trying URL 'file:///data/Repositories/CRAN/src/contrib/APackOfTheClones_1.3.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/EMJMCMC_1.5.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/epos_1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/FastUtils_0.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/GPTreeO_1.0.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/GWASinspector_1.7.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/hset_0.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/janus_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/neuroim_0.0.6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/noah_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/pkgndep_1.99.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/popsom7_7.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rankdist_1.1.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ReinforcementLearning_1.0.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rFSA_0.9.6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/sBIC_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/sklarsomega_3.0-3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/tictactoe_0.2.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/TrueSkillThroughTime_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/TSDT_1.0.8.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/uotm_0.1.6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/VecDep_0.1.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/gips_1.2.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/r2r_0.1.2.tar.gz' installing dependencies ‘BAS’, ‘base64’, ‘bindata’, ‘BiocVersion’, ‘combiter’, ‘covglasso’, ‘DAAG’, ‘ElliptCopulas’, ‘fossil’, ‘HAC’, ‘hash’, ‘HSAUR2’, ‘mlegp’, ‘narray’, ‘permutations’, ‘Rook’, ‘rPref’, ‘som’, ‘StatRank’, ‘survRM2’, ‘TopKLists’ also installing the dependency ‘kStatistics’ begin installing package ‘kStatistics’ begin installing package ‘BAS’ begin installing package ‘bindata’ begin installing package ‘mlegp’ begin installing package ‘TopKLists’ begin installing package ‘narray’ begin installing package ‘StatRank’ begin installing package ‘BiocVersion’ begin installing package ‘Rook’ begin installing package ‘base64’ begin installing package ‘som’ begin installing package ‘rPref’ begin installing package ‘combiter’ begin installing package ‘survRM2’ begin installing package ‘HAC’ begin installing package ‘covglasso’ begin installing package ‘fossil’ begin installing package ‘permutations’ begin installing package ‘DAAG’ begin installing package ‘HSAUR2’ begin installing package ‘hash’ * installing *source* package ‘BiocVersion’ ... ** this is package ‘BiocVersion’ version ‘3.22.0’ ** package ‘BiocVersion’ successfully unpacked and MD5 sums checked ** using staged installation ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocVersion) * installing *source* package ‘base64’ ... ** this is package ‘base64’ version ‘2.0.2’ ** package ‘base64’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (base64) * installing *source* package ‘bindata’ ... ** this is package ‘bindata’ version ‘0.9-23’ ** package ‘bindata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bindata) * installing *source* package ‘hash’ ... ** this is package ‘hash’ version ‘2.2.6.4’ ** using staged installation ** R ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hash) * installing *source* package ‘HSAUR2’ ... ** this is package ‘HSAUR2’ version ‘1.1-21’ ** package ‘HSAUR2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HSAUR2) * installing *source* package ‘kStatistics’ ... ** this is package ‘kStatistics’ version ‘2.1.1’ ** package ‘kStatistics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kStatistics) begin installing package ‘ElliptCopulas’ * installing *source* package ‘som’ ... ** this is package ‘som’ version ‘0.3-5.2’ ** package ‘som’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8NXzny/R.INSTALL15a8734a38e2a7/som/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c som.cc -o som.o In file included from tntsupp.h:8, from sub.h:1, from SomParam.h:2, from som.cc:4: tnt/fmat.h: In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘*this.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘double rect_dist(TNT::Region2D >, TNT::Region2D >)’ at SomParam.h:11:19: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘TNT::Subscript find_winner(TNT::DMatrix&, TNT::Subscript, TNT::DMatrix&)’ at som.cc:12:40: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘TNT::Subscript find_winner(TNT::DMatrix&, TNT::Subscript, TNT::DMatrix&)’ at som.cc:16:36: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘void visual(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&)’ at som.cc:57:36: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘int update(TNT::DMatrix&, TNT::DMatrix&, TNT::Subscript, double, TNT::DVector&)’ at som.cc:32:24: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘double qerror(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, SomParam&)’ at som.cc:76:38: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘void som_top(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, SomParam&, SomParam&, double*)’ at som.cc:108:1: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘cord.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)’ at som.cc:225:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Vis.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)’ at som.cc:225:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Code.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)’ at som.cc:225:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Data.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Vis.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Cord.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Code.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Data.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o som.so som.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8NXzny/R.INSTALL15a8734a38e2a7/som/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-som/00new/som/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (som) * installing *source* package ‘mlegp’ ... ** this is package ‘mlegp’ version ‘3.1.10’ ** package ‘mlegp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpncSaLt/R.INSTALL15a84e121f7edd/mlegp/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SFMT.c -o SFMT.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lbfgs.c -o lbfgs.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mlegp.c -o mlegp.o In file included from mlegp.c:9: matrix_vector.h:360:13: warning: ‘printVector’ defined but not used [-Wunused-function] 360 | static void printVector(const char *fmt, const double *b, int m) | ^~~~~~~~~~~ matrix_vector.h:346:13: warning: ‘printPackedMatrix’ defined but not used [-Wunused-function] 346 | static void printPackedMatrix(const char *fmt, const double *a, int n) | ^~~~~~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mlegp_init.c -o mlegp_init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nelder_mead_min.c -o nelder_mead_min.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c print.c -o print.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o mlegp.so SFMT.o lbfgs.o mlegp.o mlegp_init.o nelder_mead_min.o print.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpncSaLt/R.INSTALL15a84e121f7edd/mlegp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mlegp/00new/mlegp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlegp) * installing *source* package ‘fossil’ ... ** this is package ‘fossil’ version ‘0.4.0’ ** package ‘fossil’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fossil) * installing *source* package ‘Rook’ ... ** this is package ‘Rook’ version ‘1.2’ ** package ‘Rook’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPQm7wM/R.INSTALL15a86991ae496/Rook/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rook.c -o rook.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o Rook.so rook.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPQm7wM/R.INSTALL15a86991ae496/Rook/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rook/00new/Rook/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rook) * installing *source* package ‘ElliptCopulas’ ... ** this is package ‘ElliptCopulas’ version ‘0.1.4.1’ ** package ‘ElliptCopulas’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ElliptCopulas) * installing *source* package ‘survRM2’ ... ** this is package ‘survRM2’ version ‘1.0-4’ ** package ‘survRM2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (survRM2) * installing *source* package ‘StatRank’ ... ** this is package ‘StatRank’ version ‘0.0.6’ ** package ‘StatRank’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (StatRank) * installing *source* package ‘DAAG’ ... ** this is package ‘DAAG’ version ‘1.25.7’ ** package ‘DAAG’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DAAG) * installing *source* package ‘TopKLists’ ... ** this is package ‘TopKLists’ version ‘1.0.8’ ** package ‘TopKLists’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmaJLGQ/R.INSTALL15a84a45ec4edc/TopKLists/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c TopK.c -o TopK.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o TopKLists.so TopK.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmaJLGQ/R.INSTALL15a84a45ec4edc/TopKLists/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-TopKLists/00new/TopKLists/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TopKLists) * installing *source* package ‘HAC’ ... ** this is package ‘HAC’ version ‘1.1-2’ ** package ‘HAC’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HAC) * installing *source* package ‘permutations’ ... ** this is package ‘permutations’ version ‘1.1-6’ ** package ‘permutations’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (permutations) * installing *source* package ‘BAS’ ... ** this is package ‘BAS’ version ‘2.0.2’ ** package ‘BAS’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUlNpGK/R.INSTALL15a8521b351bca/BAS/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c E_ZS.c -o E_ZS.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c MH-funs.c -o MH-funs.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ZS_approx_full_np.c -o ZS_approx_full_np.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ZS_approx_null_np.c -o ZS_approx_null_np.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c amcmc-funs.c -o amcmc-funs.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bayesglm.c -o bayesglm.o bayesglm.c: In function ‘glm_fit’: bayesglm.c:62:17: warning: variable ‘betapriorfamily’ set but not used [-Wunused-but-set-variable] 62 | betapriorptr *betapriorfamily; | ^~~~~~~~~~~~~~~ bayesglm.c:178:17: warning: ‘disp’ may be used uninitialized [-Wmaybe-uninitialized] 178 | se[j] = sqrt(se[j]*disp); | ^~~~~~~~~~~~~~~~ bayesglm.c:54:10: note: ‘disp’ was declared here 54 | double disp; | ^~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bayesreg.c -o bayesreg.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c betapriorfamily.c -o betapriorfamily.o betapriorfamily.c: In function ‘intrinsic_glm_shrinkage’: betapriorfamily.c:239:38: warning: unused variable ‘u’ [-Wunused-variable] 239 | double a, b, s, r, v, theta, n, p, u, shrinkage; | ^ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cch.c -o cch.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c dch1up.f -o dch1up.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c family.c -o family.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glm_deterministic.c -o glm_deterministic.o glm_deterministic.c: In function ‘glm_deterministic’: glm_deterministic.c:67:35: warning: unused variable ‘logmargy’ [-Wunused-variable] 67 | double *probs,shrinkage_m,logmargy; | ^~~~~~~~ glm_deterministic.c:67:23: warning: unused variable ‘shrinkage_m’ [-Wunused-variable] 67 | double *probs,shrinkage_m,logmargy; | ^~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glm_fit.c -o glm_fit.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glm_mcmc.c -o glm_mcmc.o glm_mcmc.c: In function ‘glm_mcmc’: glm_mcmc.c:17:39: warning: variable ‘shrinkage_m’ set but not used [-Wunused-but-set-variable] 17 | double *probs, MH=0.0, prior_m=1.0, shrinkage_m, logmargy, postold, postnew; | ^~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glm_mcmc_grow.c -o glm_mcmc_grow.o glm_mcmc_grow.c: In function ‘glm_mcmc_grow’: glm_mcmc_grow.c:117:45: warning: variable ‘shrinkage_m’ set but not used [-Wunused-but-set-variable] 117 | double *probs, MH=0.0, prior_m=1.0, shrinkage_m, logmarg_m, postold, postnew; | ^~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glm_mcmcbas.c -o glm_mcmcbas.o glm_mcmcbas.c: In function ‘glm_mcmcbas’: glm_mcmcbas.c:54:44: warning: variable ‘shrinkage_m’ set but not used [-Wunused-but-set-variable] 54 | double *probs, MH=0.0, prior_m=1.0,shrinkage_m, logmargy, postold, postnew; | ^~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glm_sampleworep.c -o glm_sampleworep.o glm_sampleworep.c: In function ‘glm_sampleworep’: glm_sampleworep.c:121:33: warning: variable ‘shrinkage_m’ set but not used [-Wunused-but-set-variable] 121 | double *probs,logmargy, shrinkage_m; | ^~~~~~~~~~~ glm_sampleworep.c:121:23: warning: variable ‘logmargy’ set but not used [-Wunused-but-set-variable] 121 | double *probs,logmargy, shrinkage_m; | ^~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glm_sampleworep_grow.c -o glm_sampleworep_grow.o glm_sampleworep_grow.c: In function ‘glm_sampleworep_grow’: glm_sampleworep_grow.c:101:33: warning: variable ‘shrinkage_m’ set but not used [-Wunused-but-set-variable] 101 | double *probs,logmargy, shrinkage_m; | ^~~~~~~~~~~ glm_sampleworep_grow.c:101:23: warning: variable ‘logmargy’ set but not used [-Wunused-but-set-variable] 101 | double *probs,logmargy, shrinkage_m; | ^~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hg_approx_null_np.c -o hg_approx_null_np.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hyp1F1.c -o hyp1F1.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hyp2f1.c -o hyp2f1.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hypergeometric1F1.c -o hypergeometric1F1.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hypergeometric2F1.c -o hypergeometric2F1.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lm_amcmc.c -o lm_amcmc.o lm_amcmc.c: In function ‘amcmc’: lm_amcmc.c:348:35: warning: ‘new_loc’ may be used uninitialized [-Wmaybe-uninitialized] 348 | INTEGER(Rcounts)[old_loc] += 1; | ~~~~~~~~~~~~~~~~^~~~~~~~~ lm_amcmc.c:251:13: note: ‘new_loc’ was declared here 251 | int new_loc; | ^~~~~~~ lm_amcmc.c:445:34: warning: ‘postold’ may be used uninitialized [-Wmaybe-uninitialized] 445 | if (!IS) MH = exp(postnew - postold + log(pigammaold) - log(pigammanew)); | ~~~~~~~~^~~~~~~~~ lm_amcmc.c:135:47: note: ‘postold’ was declared here 135 | R2_m, RSquareFull, logmarg_m, postold, postnew; | ^~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lm_amcmc_growable.c -o lm_amcmc_growable.o lm_amcmc_growable.c: In function ‘amcmc_grow’: lm_amcmc_growable.c:331:35: warning: ‘new_loc’ may be used uninitialized [-Wmaybe-uninitialized] 331 | INTEGER(Rcounts)[old_loc] += 1; | ~~~~~~~~~~~~~~~~^~~~~~~~~ lm_amcmc_growable.c:234:13: note: ‘new_loc’ was declared here 234 | int new_loc; | ^~~~~~~ lm_amcmc_growable.c:474:34: warning: ‘postold’ may be used uninitialized [-Wmaybe-uninitialized] 474 | if (!IS) MH = exp(postnew - postold + log(pigammaold) - log(pigammanew)); | ~~~~~~~~^~~~~~~~~ lm_amcmc_growable.c:120:47: note: ‘postold’ was declared here 120 | R2_m, RSquareFull, logmarg_m, postold, postnew; | ^~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lm_deterministic.c -o lm_deterministic.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lm_mcmc.c -o lm_mcmc.o lm_mcmc.c: In function ‘mcmc’: lm_mcmc.c:137:13: warning: unused variable ‘k’ [-Wunused-variable] 137 | int k = LENGTH(modelprobs); | ^ lm_mcmc.c:312:35: warning: ‘new_loc’ may be used uninitialized [-Wmaybe-uninitialized] 312 | INTEGER(Rcounts)[old_loc] += 1; | ~~~~~~~~~~~~~~~~^~~~~~~~~ lm_mcmc.c:216:13: note: ‘new_loc’ was declared here 216 | int new_loc; | ^~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lm_mcmc_grow.c -o lm_mcmc_grow.o lm_mcmc_grow.c: In function ‘mcmc_grow’: lm_mcmc_grow.c:306:35: warning: ‘new_loc’ may be used uninitialized [-Wmaybe-uninitialized] 306 | INTEGER(Rcounts)[old_loc] += 1; | ~~~~~~~~~~~~~~~~^~~~~~~~~ lm_mcmc_grow.c:211:13: note: ‘new_loc’ was declared here 211 | int new_loc; | ^~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lm_mcmcbas.c -o lm_mcmcbas.o lm_mcmcbas.c: In function ‘mcmcbas’: lm_mcmcbas.c:297:22: warning: ‘new_loc’ may be used uninitialized [-Wmaybe-uninitialized] 297 | INTEGER(counts)[old_loc] += 1; | ~~~~~~~~~~~~~~~^~~~~~~~~ lm_mcmcbas.c:194:9: note: ‘new_loc’ was declared here 194 | int new_loc; | ^~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lm_sampleworep-grow.c -o lm_sampleworep-grow.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lm_sampleworep.c -o lm_sampleworep.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mem.c -o mem.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c model_probabilities.c -o model_probabilities.o model_probabilities.c: In function ‘compute_margprobs_Bayes_BAS_MCMC’: model_probabilities.c:129:17: warning: unused variable ‘probNotInS’ [-Wunused-variable] 129 | double *beta, probNotInS = 1.0; | ^~~~~~~~~~ In file included from bas.h:23, from model_probabilities.c:6: /home/hornik/tmp/R/include/Rmath.h:221:25: warning: unused variable ‘Rf_beta’ [-Wunused-variable] 221 | #define beta Rf_beta | ^~~~~~~ model_probabilities.c:129:11: note: in expansion of macro ‘beta’ 129 | double *beta, probNotInS = 1.0; | ^~~~ model_probabilities.c:127:22: warning: unused variable ‘n’ [-Wunused-variable] 127 | int m, j, *model, *n; | ^ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mtherr.c -o mtherr.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c resizeVectors.c -o resizeVectors.o resizeVectors.c: In function ‘resizeVector’: resizeVectors.c:78:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 78 | for (i = 0; i < len_new; i++) | ^~~ resizeVectors.c:86:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 86 | break; | ^~~~~ resizeVectors.c:88:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 88 | for (i = 0; i < len_new; i++) | ^~~ resizeVectors.c:94:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 94 | break; | ^~~~~ resizeVectors.c:102:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 102 | for (i = 0; i < len_new; i++) | ^~~ resizeVectors.c:106:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 106 | break; | ^~~~~ resizeVectors.c:108:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 108 | for (i = 0; i < len_new; i++) | ^~~ resizeVectors.c:114:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 114 | break; | ^~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tree_structures.c -o tree_structures.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o BAS.so E_ZS.o MH-funs.o ZS_approx_full_np.o ZS_approx_null_np.o amcmc-funs.o bayesglm.o bayesreg.o betapriorfamily.o cch.o dch1up.o family.o glm_deterministic.o glm_fit.o glm_mcmc.o glm_mcmc_grow.o glm_mcmcbas.o glm_sampleworep.o glm_sampleworep_grow.o hg_approx_null_np.o hyp1F1.o hyp2f1.o hypergeometric1F1.o hypergeometric2F1.o init.o lm_amcmc.o lm_amcmc_growable.o lm_deterministic.o lm_mcmc.o lm_mcmc_grow.o lm_mcmcbas.o lm_sampleworep-grow.o lm_sampleworep.o mem.o model_probabilities.o mtherr.o resizeVectors.o tree_structures.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUlNpGK/R.INSTALL15a8521b351bca/BAS/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-BAS/00new/BAS/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BAS) * installing *source* package ‘narray’ ... ** this is package ‘narray’ version ‘0.5.2’ ** package ‘narray’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplePOSb/R.INSTALL15a8667574680e/narray/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c stack.cpp -o stack.o stack.cpp: In instantiation of ‘Rcpp::Vector cpp_stack_impl(Rcpp::List, int, Rcpp::Vector, bool) [with int RTYPE = 10; Rcpp::List = Rcpp::Vector<19>]’: stack.cpp:143:51: required from here 143 | case LGLSXP: return cpp_stack_impl(array_list, along, as(fill), ovr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stack.cpp:19:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 19 | if (along == dim.size()+1) { // along introduces new dimension | ~~~~~~^~~~~~~~~~~~~~~ stack.cpp:34:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 34 | for (int d=0; d >::size_type’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 66 | if (a2r[ai].size() != rdim.size()) | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ stack.cpp:70:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for (int i=0; i > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 90 | for (int d=0; d cpp_stack_impl(Rcpp::List, int, Rcpp::Vector, bool) [with int RTYPE = 13; Rcpp::List = Rcpp::Vector<19>]’: stack.cpp:144:51: required from here 144 | case INTSXP: return cpp_stack_impl(array_list, along, as(fill), ovr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stack.cpp:19:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 19 | if (along == dim.size()+1) { // along introduces new dimension | ~~~~~~^~~~~~~~~~~~~~~ stack.cpp:34:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 34 | for (int d=0; d >::size_type’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 66 | if (a2r[ai].size() != rdim.size()) | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ stack.cpp:70:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for (int i=0; i > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 90 | for (int d=0; d cpp_stack_impl(Rcpp::List, int, Rcpp::Vector, bool) [with int RTYPE = 14; Rcpp::List = Rcpp::Vector<19>]’: stack.cpp:145:53: required from here 145 | case REALSXP: return cpp_stack_impl(array_list, along, as(fill), ovr); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stack.cpp:19:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 19 | if (along == dim.size()+1) { // along introduces new dimension | ~~~~~~^~~~~~~~~~~~~~~ stack.cpp:34:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 34 | for (int d=0; d >::size_type’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 66 | if (a2r[ai].size() != rdim.size()) | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ stack.cpp:70:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for (int i=0; i > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 90 | for (int d=0; d cpp_stack_impl(Rcpp::List, int, Rcpp::Vector, bool) [with int RTYPE = 15; Rcpp::List = Rcpp::Vector<19>]’: stack.cpp:146:53: required from here 146 | case CPLXSXP: return cpp_stack_impl(array_list, along, as(fill), ovr); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stack.cpp:19:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 19 | if (along == dim.size()+1) { // along introduces new dimension | ~~~~~~^~~~~~~~~~~~~~~ stack.cpp:34:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 34 | for (int d=0; d >::size_type’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 66 | if (a2r[ai].size() != rdim.size()) | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ stack.cpp:70:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for (int i=0; i > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 90 | for (int d=0; d cpp_stack_impl(Rcpp::List, int, Rcpp::Vector, bool) [with int RTYPE = 16; Rcpp::List = Rcpp::Vector<19>]’: stack.cpp:147:51: required from here 147 | case STRSXP: return cpp_stack_impl(array_list, along, as(fill), ovr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stack.cpp:19:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 19 | if (along == dim.size()+1) { // along introduces new dimension | ~~~~~~^~~~~~~~~~~~~~~ stack.cpp:34:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 34 | for (int d=0; d >::size_type’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 66 | if (a2r[ai].size() != rdim.size()) | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ stack.cpp:70:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for (int i=0; i > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 90 | for (int d=0; d= 2.12.0), methods, utils Timings: user system elapsed hash 30.817 4.115 35.4 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 1 23 Check results summary: hash ... OK rdepends_APackOfTheClones ... OK rdepends_EMJMCMC ... OK rdepends_epos ... OK rdepends_FastUtils ... OK rdepends_gips ... OK rdepends_GPTreeO ... OK rdepends_GWASinspector ... OK rdepends_hset ... OK rdepends_janus ... OK rdepends_neuroim ... OK rdepends_noah ... OK rdepends_pkgndep ... OK rdepends_popsom7 ... OK rdepends_r2r ... OK rdepends_rankdist ... OK rdepends_ReinforcementLearning ... OK rdepends_rFSA ... OK rdepends_sBIC ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_sklarsomega ... OK rdepends_tictactoe ... OK rdepends_TrueSkillThroughTime ... OK rdepends_TSDT ... OK rdepends_uotm ... OK rdepends_VecDep ... OK Check results changes: Package: hset Check: CRAN incoming feasibility Old result: NOTE Package: neuroim Check: CRAN incoming feasibility Old result: NOTE Package: rankdist Check: CRAN incoming feasibility Old result: NOTE