* installing *source* package ‘harmony’ ...
** this is package ‘harmony’ version ‘2.0.2’
** using staged installation
checking for BLAS procedures (sdot_, sgemm_)...
  BLAS procedures NOT found -- disabling BLAS for Armadillo
checking for LAPACK procedures (sgesv_)...
  LAPACK procedures NOT found -- disabling LAPACK for Armadillo
configure: src/Makevars written
  PKG_CXXFLAGS = -DARMA_USE_CURRENT -DARMA_DONT_USE_BLAS -DARMA_DONT_USE_LAPACK
  PKG_LIBS     = -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -DARMA_USE_CURRENT -DARMA_DONT_USE_BLAS -DARMA_DONT_USE_LAPACK -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -DARMA_USE_CURRENT -DARMA_DONT_USE_BLAS -DARMA_DONT_USE_LAPACK -fpic  -g -O2 -Wall -pedantic -mtune=native   -c harmony.cpp -o harmony.o
harmony.cpp: In member function ‘void harmony::moe_correct_ridge_cpp()’:
harmony.cpp:374:64: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  374 |       if ((current_covariate < covariate_bounds.size()) && !(b < covariate_bounds[current_covariate])) {
harmony.cpp:395:64: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  395 |       if ((current_covariate < covariate_bounds.size()) && !(b < covariate_bounds[current_covariate])) {
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -DARMA_USE_CURRENT -DARMA_DONT_USE_BLAS -DARMA_DONT_USE_LAPACK -fpic  -g -O2 -Wall -pedantic -mtune=native   -c timer.cpp -o timer.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -DARMA_USE_CURRENT -DARMA_DONT_USE_BLAS -DARMA_DONT_USE_LAPACK -fpic  -g -O2 -Wall -pedantic -mtune=native   -c utils.cpp -o utils.o
g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o harmony.so RcppExports.o harmony.o timer.o utils.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR
installing to /home/hornik/tmp/CRAN_recheck/harmony.Rcheck/00LOCK-harmony/00new/harmony/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (harmony)