Package: ProFAST
Check: whether package can be installed
New result: ERROR
  Installation failed.

Package: scAnnotate
Check: whether package can be installed
New result: ERROR
  Installation failed.

Package: Seurat
Check: Rd cross-references
New result: WARNING
  Package unavailable to check Rd xrefs: ‘BPCells’
  Missing link(s) in Rd file 'HarmonyIntegration.Rd':
    ‘[harmony:HarmonyMatrix]{harmony::HarmonyMatrix}’
  
  See section 'Cross-references' in the 'Writing R Extensions' manual.

Package: symphony
Check: dependencies in R code
New result: WARNING
  Missing or unexported objects:
    ‘harmony::HarmonyMatrix’ ‘harmony::moe_ridge_get_betas’

Package: symphony
Check: re-building of vignette outputs
New result: ERROR
  Error(s) in re-building vignettes:
    ...
  --- re-building ‘quickstart_tutorial.Rmd’ using rmarkdown
  
  Quitting from quickstart_tutorial.Rmd:142-154 [unnamed-chunk-11]
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  <error/rlang_error>
  Error:
  ! 'HarmonyMatrix' is not an exported object from 'namespace:harmony'
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  
  Error: processing vignette 'quickstart_tutorial.Rmd' failed with diagnostics:
  'HarmonyMatrix' is not an exported object from 'namespace:harmony'
  --- failed re-building ‘quickstart_tutorial.Rmd’
  
  SUMMARY: processing the following file failed:
    ‘quickstart_tutorial.Rmd’
  
  Error: Vignette re-building failed.
  Execution halted